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Aliases & Descriptions for DBNL
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ABP1 2 CMAP 3 Drebrin-F 3 HIP-55 1 , 2 , 3 SH3P7 1 , 2 , 3 drebrin-like 2
Descriptions Cervical SH3P7 3 Cervical mucin-associated protein 3 HPK1-interacting protein of 55 kDa 3 SH3 domain-containing protein 7 3 src homology 3 domain-containing protein HIP-55 2
Search outside databases for aliases for DBNL genePrevious GC identifers: GC07U990153 GC07P043857
Summaries for DBNL (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: DBNL_HUMAN, Q9UJU6 Function : Actin-binding adapter protein. May act as a common effector of antigen receptor-signalingpathways in leukocytes. Its association with dynamin suggests that it may also connect the actincytoskeleton to endocytic function. Acts as a key component of the immunological synapse thatregulates T-cell activation by bridging TCRs and the actin cytoskeleton to gene activation andendocytic processes. Binds to F-actin but is not involved in actin polymerization, capping orbundling. Does not bind G-actin
Gene Wiki entry for DBNL (Drebrin-like)
Genomic Location for DBNL
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the DBNL gene Entrez Gene cytogenetic band: 7p13 Ensembl cytogenetic band: 7p13 HGNC cytogenetic band: 7p13 DBNL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07P044050:
(about GC identifiers )
Start:
44,050,830 bp from pter
End:
44,067,840 bp from pter
Size:
17,011 bases
Orientation:
plus strand
1 alternative location : Chr 7+,CRA_TCAG 44,123,799-44,140,805
RefSeq DNA sequence: NC_000007.12 NT_007819.16 NT_079592.2 Proteins for DBNL
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: DBNL_HUMAN, Q9UJU6 (See
protein sequence )Recommended Name: Drebrin-like protein Size : 430 amino acids; 48207 Da
Subunit : Interacts with SHANK2 and SHANK3 (By similarity). Interacts with FGD1, dynamin, MAP4K1 andPRAM1
Subcellular location : Cytoplasm, cytoskeleton. Cell projection, lamellipodium. Note=Corticalcytoskeleton. Associates with lamellipodial actin
Miscellaneous : Degraded by caspases during apoptosis
PDB structures from and Proteopedia : 1X67 (3D)
 
Secondary accessions : A4D2I9 P84070 Q6IAI8 Q96F30 Q96K74 Q9HBN8 Q9NR72Alternative splicing : 3 isoforms : Q9UJU6-1 Q9UJU6-2 Q9UJU6-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001014436.1 NP_001116428.1 NP_054782.2 ENSEMBL proteins: ENSP00000258780 ENSP00000374020 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: DBNL 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for DBNL: Assays for DBNL:
Protein
Domains/ Families for DBNL(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9UJU6 ProtoNet protein and cluster: Q9UJU6
2 Blocks protein families : IPB001452 SH3 domain signature IPB002108 Actin-binding UniProtKB/Swiss-Prot: DBNL_HUMAN, Q9UJU6 Domain : The SH3 domain mediates interaction with SHANK2, SHANK3 and PRAM1Similarity : Belongs to the ABP1 familySimilarity : Contains 1 ADF-H domainSimilarity : Contains 1 SH3 domain
Gene Function for DBNL
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001122956 Applied Biosystems Silencer ® siRNAs for DBNL Sigma-Aldrich siRNA for DBNL Sigma-Aldrich shRNA Panels and shRNA for DBNL Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001014436                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001014436                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001014436  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001122956 UniProtKB/Swiss-Prot: DBNL_HUMAN, Q9UJU6 Function : Actin-binding adapter protein. May act as a common effector of antigen receptor-signalingpathways in leukocytes. Its association with dynamin suggests that it may also connect the actincytoskeleton to endocytic function. Acts as a key component of the immunological synapse thatregulates T-cell activation by bridging TCRs and the actin cytoskeleton to gene activation andendocytic processes. Binds to F-actin but is not involved in actin polymerization, capping orbundling. Does not bind G-actin
Genatlas biochemistry entry for DBNL :drebrin (actin-binding protein)-like
11 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Dbnl) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for DBNL
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for DBNL 5/32 Interacting proteins for DBNL (ENSP00000258780 3 Q9UJU6 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 32
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for DBNL (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Transcripts for DBNL(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001122956 Sigma-Aldrich siRNA for DBNL Sigma-Aldrich shRNA Panels and shRNA for DBNL Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001014436 NM_001122956 NM_014063
REFSEQ mRNAs for DBNL gene (3 alternative transcripts): NM_001014436.2 NM_001122956.1 NM_014063.6
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001014436 NM_001122956 NM_014063
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001014436                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001014436                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001014436  
Additional cDNA sequence: AF077353.1 AF151364.1 AF197060.1 AF218020.3 AF250287.1 AK027367.1 AK293151.1 AK293279.1 AK293340.1 AK293698.1 AK296778.1 AK298102.1 AK300630.1 AK302037.1 BC011677.2 BC031687.1 CR457167.1 CR593669.1 CR597853.1 CR599020.1 CR606615.1 CR614209.1 CR615718.1 CR626558.1
24/30 DOTS entries (see all 30
): DT.100753359 DT.100766319 DT.100828795 DT.216295 DT.410016 DT.100828797 DT.121041177 DT.121040879 DT.100828798 DT.100828803 DT.121041104 DT.101984853 DT.100828799 DT.92451241 DT.101984852 DT.100031036 DT.100828804 DT.121040919 DT.121041081 DT.100828808 DT.121041117 DT.91912582 DT.95098194 DT.100828806
24/527 AceView cDNA sequences (see all 527
):CD370570 BM759843 AA587756 NM_014063 BU540876 BU168183 CR614209 CB161625 BX114492 BQ423350 BQ300275 BM808785 BQ049324 BQ690891 BQ420321 BG676427 BQ671022 BG180312 BE907437 BM810725 BQ671329 BU147065 BM914861 BP347163
highest scoring ESTs for DBNL :AA057835 AA149920 AA193529 AA335528 AA335848 AA349275 AA352416 AA548317 AA587756 AA632166
Unigene Cluster for DBNL: Drebrin-like Hs.436500 [show with all ESTs ] Unigene Representative Sequence: NM_001122956 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for DBNL (see all 11
) ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11 ^ 12 ^ 13a · 13b · SP1 :         -   -     -       -         -   -       -                 SP2 :         -   -     -       -         -   -                       SP3 :         -   -     -       -         -   -       -                 SP4 :                     -                 -                 SP5 :           -     -       -         -   -                      
ExUns: 13c · 13d · 13e SP1 :       SP2 :       SP3 :       SP4 :       SP5 :      
About this scheme ECgene alternative splicing isoforms for DBNL 2 Ensembl transcripts including schematic representations : ENST00000258780
ENST00000389369
Expression for DBNL
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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DBNL expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DBNL 1 / 2 / 3
5 probe-sets matching DBNL gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTCCTCCACGSOURCE GeneReport for Unigene cluster: Hs.436500
Orthologs for DBNL
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DBNL gene from 5/13 species (see all 13
)
About this table Species with no ortholog for DBNL ENSEMBL Gene Tree for DBNL Paralogs for DBNL (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for DBNL gene DBN1 2 HCLS1 2 CTTN 2
SNPs/Variants for DBNL (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for DBNL (up to first 250kb)
Disorders & Mutations for DBNL
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 610106
Medical News for DBNL (Possibly Related Articles in
Doctor's Guide )
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--
Publications for DBNL (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/32 PubMed articles for DBNL gene (see all 32
): Caspase-mediated cleavage of actin-binding and SH3-domain-containing proteins cortactin, HS1, and HIP-55 during apoptosis. (PubMed id 11689006) 1, 3, 4 Chen Y.-R.... Tan T.-H. (2001) Recruitment of the actin-binding protein HIP-55 to the immunological synapse regulates T cell receptor signaling and endocytosis. (PubMed id 14729663) 1, 3, 4 Le Bras S....Deckert M. (2004) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243) 3, 4 Beausoleil S.A.... Gygi S.P. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) PRAM-1 potentiates arsenic trioxide-induced JNK activation. (PubMed id 15637062) 3, 4 Denis F.M.... Lutz P.G. (2005) Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. (PubMed id 16094384) 3, 4 Tao W.A.... Aebersold R. (2005) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874) 3, 4 Wan D....Gu J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004)
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Genome Databases showing DBNL
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing DBNL
(According to HUGE )
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Specialized Databases showing DBNL (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for DBNL (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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