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Aliases & Descriptions for DBI
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ACBD1 1 , 2 ACBP 1 , 2 , 3 CCK-RP 2 EP 2 , 3 Endozepine 3 MGC70414 2 endozepine 2
Descriptions Diazepam-binding inhibitor 3 GABA receptor modulator 2 acyl coenzyme A binding protein 2 acyl-Coenzyme A binding domain containing 1 2 cholecystokinin-releasing peptide, trypsin-sensitive 2 diazepam binding inhibitor 2 diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) 2
Search outside databases for aliases for DBI genePrevious GC identifers: GC02P117330 GC02P118045 GC02P120031 GC02P120219 GC02P120220
Summaries for DBI (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for DBI : This gene encodes diazepam binding inhibitor, a protein that is regulated by hormones and isinvolved in lipid metabolism and the displacement of beta-carbolines and benzodiazepines, whichmodulate signal transduction at type A gamma-aminobutyric acid receptors located in brainsynapses. The protein is conserved from yeast to mammals, with the most highly conserved domainconsisting of seven contiguous residues that constitute the hydrophobic binding site for medium-and long-chain acyl-Coenzyme A esters. Diazepam binding inhibitor is also known to mediate thefeedback regulation of pancreatic secretion and the postprandial release of cholecystokinin, inaddition to its role as a mediator in corticotropin-dependent adrenal steroidogenesis. Threepseudogenes located on chromosomes 6, 8 and 16 have been identified. Multiple transcript variantsencoding different isoforms have been described for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: ACBP_HUMAN, P07108 Function : Binds medium- and long-chain acyl-CoA esters with very high affinity and may function asan intracellular carrier of acyl-CoA esters. It is also able to displace diazepam from thebenzodiazepine (BZD) recognition site located on the GABA type A receptor. It is thereforepossible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor
Gene Wiki entry for DBI (Diazepam_binding_inhibitor)
Genomic Location for DBI
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the DBI gene Entrez Gene cytogenetic band: 2q12-q21 Ensembl cytogenetic band: 2q14.2 HGNC cytogenetic band: 2q12-q21 DBI Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P119840:
(about GC identifiers )
Start:
119,840,974 bp from pter
End:
119,846,592 bp from pter
Size:
5,619 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000002.10 NT_022135.15 Proteins for DBI
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ACBP_HUMAN, P07108 (See
protein sequence )Recommended Name: Acyl-CoA-binding protein Size : 87 amino acids; 10044 Da
Subunit : Monomer
PDB structure from and Proteopedia : 2CB8 (3D)
 2FJ9 (3D)
 
Secondary accessions : P08869 Q53SQ7 Q6IB48 Q9UCI8Alternative splicing : 2 isoforms : P07108-1 P07108-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001073331.1 NP_001073332.1 NP_065438.1 ENSEMBL proteins: ENSP00000348116 ENSP00000386003 ENSP00000311117 ENSP00000386486 ENSP00000376815 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: DBI Antibodies for DBI: Assays for DBI:
Protein
Domains/ Families for DBI(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P07108 ProtoNet protein and cluster: P07108
1 Blocks protein family : IPB000582 Acyl-coA-binding protein UniProtKB/Swiss-Prot: ACBP_HUMAN, P07108 Similarity : Belongs to the ACBP familySimilarity : Contains 1 ACB (acyl-CoA-binding) domain
Gene Function for DBI
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_020548 Applied Biosystems Silencer ® siRNAs for DBI Sigma-Aldrich siRNA for DBI Sigma-Aldrich shRNA for DBI Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001079862                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001079862                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001079862  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020548 UniProtKB/Swiss-Prot: ACBP_HUMAN, P07108 Function : Binds medium- and long-chain acyl-CoA esters with very high affinity and may function asan intracellular carrier of acyl-CoA esters. It is also able to displace diazepam from thebenzodiazepine (BZD) recognition site located on the GABA type A receptor. It is thereforepossible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor
Genatlas biochemistry entry for DBI :diazepam binding inhibitor (?GABA receptor modulator),endozepine 1 MGI phenotypic allele for Dbi (no phenotypes)3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for DBI
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/21 Interacting proteins for DBI (P07108 2 ENSP00000311117 3 ) via UniProtKB, MINT, and/or STRING (see all 21
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006810 transport
IEA --
About this table
Drugs & Compounds for DBI (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for DBI 7 Novoseek chemical compound relationships for DBI gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
acyl-coa
90.78
98
7702576 (6), 17044054 (4), 14527695 (3), 9022045 (2) (see all 39 )
fatty acid
53.98
9
19088433 (1), 10721891 (1), 17044054 (1), 2266965 (1) (see all 7 )
benzodiazepine
51.54
6
9022045 (1), 9817074 (1), 16908521 (1), 8634149 (1)
sterol
47.97
4
16055366 (1), 10412765 (1), 12518025 (1), 10331663 (1)
lipid
37.70
10
12479581 (2), 15102341 (1), 18242688 (1), 16055366 (1) (see all 6 )
hydrogen
0.00
2
10966822 (2)
cholesterol
0.00
6
12518025 (4), 19088433 (1), 9219899 (1)
About this table
Transcripts for DBI(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_020548 Sigma-Aldrich siRNA for DBI Sigma-Aldrich shRNA for DBI Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001079862 NM_001079863 NM_020548
REFSEQ mRNAs for DBI gene (3 alternative transcripts): NM_001079862.1 NM_001079863.1 NM_020548.5
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001079862 NM_001079863 NM_020548
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001079862                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001079862                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001079862  
Additional cDNA sequence: AM000001.1 BC006466.1 BC062996.1 CR456956.1 FM213122.1 FM213123.1 FM213124.1 FM213125.1 FM213126.1 FM213127.1 FM213128.1 FM213129.1 FM213130.1 FM213131.1 FM213132.1 M14200.1 M15887.1
18 DOTS entries : DT.101956652 DT.449558 DT.92450395 DT.100797944 DT.121021264 DT.100725618 DT.95160934 DT.100038465 DT.100797941 DT.65287453 DT.100797929 DT.121021232 DT.121021245 DT.121021246 DT.95160922 DT.97855414 DT.121021256 DT.92450393
24/460 AceView cDNA sequences (see all 460
):CA426141 AA400296 AA978357 BP371076 H87336 AI309996 BI825918 CF527852 AA401480 CB120064 CD677422 BQ648309 AW327842 CB106011 CB119098 BG031972 AV715821 BM772690 AA355351 BQ648466 BQ940531 AI242184 AA378453 CB124252
highest scoring ESTs for DBI :AA070950 AA070951 AA099590 AA165593 AA229022 AA229711 AA229737 AA230067 AA306540 AA313190
Unigene Cluster for DBI: Diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) Hs.78888 [show with all ESTs ] Unigene Representative Sequence: BQ278412 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for DBI (see all 8
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c · 7d · 7e SP1 :         -   -   -     -     -               SP2 :         -   -   -     -     -               SP3 :             -     -     -               SP4 :         -   -   -   -   -     -               SP5 :             -   -   -     -              
About this scheme ECgene alternative splicing isoforms for DBI 5 Ensembl transcripts including schematic representations : ENST00000355857
ENST00000401684
ENST00000311521
ENST00000409094
ENST00000393103
Expression for DBI
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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DBI expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DBI 1 / 2 / 3
7 probe-sets matching DBI gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGTTTATCCTSOURCE GeneReport for Unigene cluster: Hs.78888 Expression variation in blood from EXPOLDB for DBI
Orthologs for DBI
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DBI gene from 5/18 species (see all 18
)
About this table Species with no ortholog for DBI ENSEMBL Gene Tree for DBI Paralogs for DBI (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for DBI gene ACBD7 2 Pseudogenes 6 related pseudogenes
SNPs/Variants for DBI (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for DBI (up to first 250kb)
Disorders & Mutations for DBI
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 125950 2 Novoseek disease relationships for DBI gene
About this table 1 PharmGKB disease relationship for DBI gene About this table Human Genome Epidemiology Navigator: DBI (7 documents)
Medical News for DBI (Possibly Related Articles in
Doctor's Guide )
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--
Publications for DBI (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/98 PubMed articles for DBI gene (see all 98
): High resolution crystal structures of unliganded and liganded human liver ACBP reveal a new mode of binding for the acyl-CoA ligand. (PubMed id 17044054) 1, 3, 4 Taskinen J.P.... Wierenga R.K. (2007) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 3, 4 Hillier L.W....Wilson R.K. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801) 3, 4 Gevaert K.... Vandekerckhove J. (2003) The characterization of two diazepam binding inhibitor (DBI) transcripts in humans. (PubMed id 7534063) 3, 4 Kolmer M.... Alho H. (1995) New chromosomal mapping assignments for argininosuccinate synthetase pseudogene 1, interferon-beta 3 gene, and the diazepam binding inhibitor gene. (PubMed id 1440058) 2, 3 Todd S. and Naylor S.L. (1992) Bovine and human cDNA sequences encoding a putative benzodiazepine receptor ligand. (PubMed id 2881742) 3, 4 Webb N.R....Lee D.C. (1987) Cloning and expression of cDNA for human diazepam binding inhibitor, a natural ligand of an allosteric regulatory site of the gamma- aminobutyric acid type A receptor. (PubMed id 3020548) 3, 4 Gray P.W.... Costa E. (1986) Complete amino acid sequences of bovine and human endozepines. Homology with rat diazepam binding inhibitor. (PubMed id 3525533) 3, 4 Marquardt H.... Shoyab M. (1986) The transcriptional and translational control of diazepam binding inhibitor expression in rat male germ-line cells. (PubMed id 9022045) 1, 3 Kolmer M....Alho H. (1997)
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Genome Databases showing DBI
(According to
Entrez Gene ,
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing DBI
(According to HUGE )
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Specialized Databases showing DBI (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for DBI (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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