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DAW1 Gene

protein-coding   GIFtS: 37
GCID: GC02P228736

Dynein Assembly Factor With WDR Repeat Domains 1

(Previous name: WD repeat domain 69)
(Previous symbol: WDR69)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Dynein Assembly Factor With WDR Repeat Domains 11 2     WD Repeat-Containing Protein 692 3
WDR691 2 3     Outer Row Dynein Assembly 16 Homolog (Chlamydomonas)1
WD Repeat Domain 691 2     ODA162
Outer Row Dynein Assembly Protein 16 Homolog2 3     Outer Row Dynein Assembly 16 Homolog2

External Ids:    HGNC: 263831   Entrez Gene: 1647812   Ensembl: ENSG000001239777   UniProtKB: Q8N1363   

Export aliases for DAW1 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for DAW1 Gene:
DAW1 (dynein assembly factor with WDR repeat domains 1) is a protein-coding gene. An important paralog of this gene is NLE1.

UniProtKB/Swiss-Prot: DAW1_HUMAN, Q8N136
Function: May play a role in axonemal outer row dynein assembly (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000002.11  NT_005403.18  NC_018913.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for DAW1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidDAW1 promoter sequence
   Search Chromatin IP Primers for DAW1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat DAW1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q36.3   Ensembl cytogenetic band:  2q36.3   HGNC cytogenetic band: 2q36.3

DAW1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DAW1 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P228736:  view genomic region     (about GC identifiers)

Start:
228,735,770 bp from pter      End:
228,789,060 bp from pter
Size:
53,291 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: DAW1_HUMAN, Q8N136 (See protein sequence)
Recommended Name: Dynein assembly factor with WDR repeat domains 1  
Size: 415 amino acids; 45777 Da
Subunit: Interacts with IFT46
Secondary accessions: Q6ZRY1 Q8N776
Alternative splicing: 2 isoforms:  Q8N136-1   Q8N136-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for DAW1: NX_Q8N136

Explore proteomics data for DAW1 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See DAW1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_849143.1  
    ENSEMBL proteins: 
     ENSP00000362770   ENSP00000311899   ENSP00000394853   ENSP00000403670   ENSP00000437887  

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    Search eBioscience for Proteins for DAW1 

     
    antibodies-online proteins for DAW1 (5 products) 

     
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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    WDR: WD repeat domain containing

    5 InterPro protein domains:
     IPR019775 WD40_repeat_CS
     IPR001680 WD40_repeat
     IPR020472 G-protein_beta_WD-40_rep
     IPR017986 WD40_repeat_dom
     IPR015943 WD40/YVTN_repeat-like_dom

    Graphical View of Domain Structure for InterPro Entry Q8N136

    ProtoNet protein and cluster: Q8N136

    UniProtKB/Swiss-Prot: DAW1_HUMAN, Q8N136
    Similarity: Belongs to the WD repeat WDR69 family
    Similarity: Contains 8 WD repeats


    Find genes that share domains with DAW1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: DAW1_HUMAN, Q8N136
    Function: May play a role in axonemal outer row dynein assembly (By similarity)

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    Find genes that share ontologies with DAW1           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for DAW1

    miRNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    DAW1_HUMAN, Q8N136: Cell projection, cilium (Probable)

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005929cilium IEA--

    Find genes that share ontologies with DAW1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for DAW1
    Interactions:

        Search GeneGlobe Interaction Network for DAW1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for DAW1 (Q8N1363 ENSP000003118994) via UniProtKB, MINT, STRING, and/or I2D (see all 78)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DYRK2Q926303, ENSP000003421054I2D: score=1 STRING: ENSP00000342105
    SUMO1P631653, ENSP000003760764I2D: score=1 STRING: ENSP00000376076
    AAR2ENSP000003136744STRING: ENSP00000313674
    DDX6ENSP000002640184STRING: ENSP00000264018
    LSM1ENSP000003105964STRING: ENSP00000310596
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for DAW1



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for DAW1 gene: 
    NM_178821.1  

    Unigene Cluster for DAW1:

    Dynein assembly factor with WDR repeat domains 1
    Hs.424594  [show with all ESTs]
    Unigene Representative Sequence: AK127882
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000373666(uc002vpo.1) ENST00000309931(uc002vpn.1 uc010zlw.1)
    ENST00000440997 ENST00000454999 ENST00000472604 ENST00000545118
    miRNA
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    Inhib. RNA
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    Primer
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    OriGene qPCR primer pairs and template standards for DAW1
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      QuantiFast Probe-based Assays in human, mouse, rat DAW1

    Additional mRNA sequence: 

    AK097409.1 AK098821.1 AK127882.1 AK301861.1 BC036377.2 

    5 DOTS entries:

    DT.92018866  DT.101979316  DT.406119  DT.120997187  DT.95267753 

    Selected AceView cDNA sequences (see all 32):

    AI092784 NM_178821 BX088872 BM553331 BU185064 BM981084 BC036377 AK097409 
    BI819871 AA904430 AI699391 AK098821 BI463002 AA778646 BI459396 BI559902 
    BM563271 BI459107 CD300595 BI829535 BI561025 BI560458 AK127882 BG721025 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    DAW1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    DAW1 Expression
    About this image

    DAW1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    DAW1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.424594
        Custom PCR Arrays for DAW1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DAW1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals and fungi.

    Orthologs for DAW1 gene from Selected species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Daw15 WD repeat domain 69   --   1 (42.70 cM) 83159752 
    chicken
    (Gallus gallus)
    Aves WDR691 WD repeat domain 69 76.89(n)
    79.71(a)
      424790  XM_422608.4  XP_422608.4 
    lizard
    (Anolis carolinensis)
    Reptilia DAW16
    dynein assembly factor with WDR repeat domains 1
    74(a)
    1 ↔ 1
    3(23251300-23288483)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.126812 Xenopus laevis transcribed sequence with weak similarity more 74.31(n)    BJ067361.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.156042 Transcribed sequence with weak similarity to protein more 73.93(n)    BM342240.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG75681 CG7568 51.49(n)
    43.37(a)
      43482  NM_001276142.1  NP_001263071.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes RSA46
    WD-repeat protein involved in ribosome biogenesis;...
    21(a)
    1 → many
    III(240805-242352) YCR072C


    ENSEMBL Gene Tree for DAW1 (if available)
    TreeFam Gene Tree for DAW1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for DAW1 gene
    NLE12  WDR832  POC1B2  WDR52  ATG16L12  SNRNP402  WDR5B2  PAFAH1B12  
    SMU12  WDR382  ATG16L22  POC1A2  
    Selected SIMAP similar genes for DAW1 using alignment to 5 protein entries:     DAW1_HUMAN (see all proteins) (see all similar genes):
    SPANXA2-OT1    C12orf23    CNOT2    FANCA    GNPTAB    SERF1B
    FBXW2    WSB1    WDR5    FBXW7    WDR5B    PF20
    WDR38    EIF3I    POC1B    WDR61    SNRNP40    WDR57

    Find genes that share paralogs with DAW1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for DAW1 (see all 1345)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0358914
    A breast cancer sample4--see VAR_0358912 T M mis40--------
    rs1450711541,2
    --228734332(+) AACTTC/TCATTC 1 -- us2k10--------
    rs774011871,2
    C,F--228734355(+) GTTTCC/TTCCCC 1 -- us2k11Minor allele frequency- T:0.03WA 118
    rs786786961,2
    --228734497(+) AGAACA/TTTTAA 1 -- us2k11Minor allele frequency- T:0.00CSA 1
    rs1487583661,2
    C--228734581(+) GAAAA-/AAGAAGTA 1 -- us2k10--------
    rs1127589061,2
    F--228734651(+) GTTAGA/GGACCA 1 -- us2k13Minor allele frequency- G:0.07CSA WA 122
    rs1151959211,2
    F--228734713(+) AGTTAG/TGACAT 1 -- us2k11Minor allele frequency- T:0.02WA 118
    rs1130648241,2
    F--228734728(+) GCAGCG/AGCCTT 1 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs67221451,2
    C,F,H--228734730(+) AGCAGC/ACTTTA 1 -- us2k114Minor allele frequency- A:0.09NS EA NA CSA WA 878
    rs124649331,2
    C,F,H--228734836(+) TAGCAT/AATAAA 1 -- us2k128Minor allele frequency- A:0.46NS EA NA CSA WA EU 3371

    HapMap Linkage Disequilibrium report for DAW1 (228735770 - 228789060 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for DAW1: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing DAW1
    DNA2.0 Custom Variant and Variant Library Synthesis for DAW1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for DAW1 gene, integrated from 10 sources (see all 13):
    (articles sorted by number of sources associating them with DAW1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A unified taxonomy for ciliary dyneins. (PubMed id 21953912)1, 3 Hom E.F....King S.M. (Cytoskeleton (Hoboken) 2011)
    2. Oda16/Wdr69 is essential for axonemal dynein assembly and ciliary motility during zebrafish embryogenesis. (PubMed id 20568242)1, 3 Gao C....Mitchell D.R. (Dev. Dyn. 2010)
    3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W.... Wilson R.K. (Nature 2005)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    6. The protein interaction landscape of the human CMGC kinase group. (PubMed id 23602568)1 Varjosalo M....Gstaiger M. (Cell Rep 2013)
    7. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    8. Protein kinase DYRK2 is a scaffold that facilitates assembly of an E3 ligase. (PubMed id 19287380)1 Maddika S. and Chen J. (Nat. Cell Biol. 2009)
    9. ODA16 aids axonemal outer row dynein assembly through an interaction with the intraflagellar transport machinery. (PubMed id 18852297)2 Ahmed N.T.... Mitchell D.R. (J. Cell Biol. 2008)
    10. Broad spectrum identification of SUMO substrates in melanoma cells. (PubMed id 17549794)1 Ganesan A.K....White M.A. (Proteomics 2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 164781 HGNC: 26383 AceView: FLJ25955 Ensembl:ENSG00000123977 euGenes: HUgn164781
    ECgene: DAW1 H-InvDB: DAW1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for DAW1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for DAW1 gene:
    Search GeneIP for patents involving DAW1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Block miRNA regulation of human, mouse, rat DAW1 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing DAW1
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     Browse ESI BIO Cell Lines and PureStem Progenitors for DAW1
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