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Aliases & Descriptions for DARC
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CCBP1 1 , 2 CD234 1 , 2 Dfy 1 , 2 FY 2 , 3 GPD 1 , 2 , 3 GpFy 2 , 3 OTTHUMP00000035293 2 OTTHUMP00000060081 2 WBCQ1 2
Descriptions CD234 antigen 3 Duffy blood group 1 Duffy blood group antigen 2 Duffy blood group, chemokine receptor 2 Fy glycoprotein 2 , 3 Glycoprotein D 2 , 3 Plasmodium vivax receptor 3
Search outside databases for aliases for DARC genePrevious GC identifer: GC01P157409
Summaries for DARC (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for DARC : The protein encoded by this gene is a glycosylated membrane protein and a non-specific receptor forseveral chemokines. The encoded protein is the receptor for the human malarial parasitesPlasmodium vivax and Plasmodium knowlesi. Polymorphisms in this gene are the basis of the Duffyblood group system. Two transcript variants encoding different isoforms have been found for thisgene. [provided by RefSeq] UniProtKB/Swiss-Prot: DUFFY_HUMAN, Q16570 Function : Non-specific receptor for many chemokines such as IL-8, GRO, RANTES, MCP-1 and TARC. Itis also the receptor for the human malaria parasites Plasmodium vivax and Plasmodium knowlesi
Gene Wiki entry for DARC
Genomic Location for DARC
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the DARC gene Entrez Gene cytogenetic band: 1q21-q22 Ensembl cytogenetic band: 1q23.2 HGNC cytogenetic band: 1q21-q22 DARC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P157440:
(about GC identifiers )
Start:
157,439,721 bp from pter
End:
157,442,914 bp from pter
Size:
3,194 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for DARC
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: DUFFY_HUMAN, Q16570 (See
protein sequence )Recommended Name: Duffy antigen/chemokine receptor Size : 336 amino acids; 35553 Da
Subcellular location : Membrane; Multi-pass membrane protein
Secondary accessions : A8YPG5 O75898 Q16300 Q8WWE3 Q9UJP0 Q9UKZ5 Q9UKZ6 Q9UQE1Alternative splicing : 2 isoforms : Q16570-1 Q16570-2
REFSEQ proteins (2 alternative transcripts):
NP_001116423.1 NP_002027.2 ENSEMBL proteins: ENSP00000352341 ENSP00000357104 ENSP00000357103 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for DARC: Assays for DARC:
Protein
Domains/ Families for DARC(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q16570 ProtoNet protein and cluster: Q16570
1 Blocks protein family : IPB005384 Duffy antigen/chemokine receptor signature UniProtKB/Swiss-Prot: DUFFY_HUMAN, Q16570 Similarity : Belongs to the G-protein coupled receptor Duffy family
Gene Function for DARC
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001122951 Applied Biosystems Silencer ® siRNAs for DARC Sigma-Aldrich siRNA for DARC Sigma-Aldrich shRNA Panels and shRNA for DARC Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001122951                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001122951                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001122951  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001122951 UniProtKB/Swiss-Prot: DUFFY_HUMAN, Q16570 Function : Non-specific receptor for many chemokines such as IL-8, GRO, RANTES, MCP-1 and TARC. Itis also the receptor for the human malaria parasites Plasmodium vivax and Plasmodium knowlesi
Genatlas biochemistry entry for DARC :Duffy antigen,receptor for chemokines and plasmodium vivax
3 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Darc) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004930 G-protein coupled receptor activity
IEA -- GO:0004950 chemokine receptor activity
NAS --
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Pathways & Interactions for DARC
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for DARC --3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for DARC (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for DARC 7 Novoseek chemical compound relationships for DARC gene
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Transcripts for DARC(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001122951 Sigma-Aldrich siRNA for DARC Sigma-Aldrich shRNA Panels and shRNA for DARC Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001122951 NM_002036
REFSEQ mRNAs for DARC gene (2 alternative transcripts): NM_001122951.1 NM_002036.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001122951 NM_002036
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001122951                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001122951                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001122951  
Additional cDNA sequence: AF030521.1 AK291593.1 AK309521.1 AY167991.1 BC017817.1 BC095496.1 BX537430.1 U01839.1
5 DOTS entries : DT.421927 DT.100773431 DT.121396982 DT.92419466 DT.95130101
24/264 AceView cDNA sequences (see all 264
):AI955148 AW294540 AW296169 CR605082 NM_002036 BU150151 BQ898419 N47613 BQ640233 BM671230 AI366692 BM972973 AY046418 AI564838 BM998664 BX281058 AI094929 BM697018 AI318397 AU150243 CB154618 T30476 CD676370 CD673597
highest scoring ESTs for DARC :AA284947 AA285100 AA480120 AA482092 AA724903 AA855034 AA916897 AF030521 AI031548 AI092154
Unigene Cluster for DARC: Duffy blood group, chemokine receptor Hs.153381 [show with all ESTs ] Unigene Representative Sequence: AK291593 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000359381
ENST00000368122
ENST00000368121
Expression for DARC
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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DARC expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DARC 1 / 2 / 3
3 probe-sets matching DARC gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCTGGCCCAGSOURCE GeneReport for Unigene cluster: Hs.153381 UniProtKB/Swiss-Prot: DUFFY_HUMAN, Q16570 Tissue specificity : Found in adult kidney, adult spleen, bone marrow and fetal liver. Inparticular, it is expressed along postcapillary venules throughout the body, except in the adultliver. Erythroid cells and postcapillary venule endothelium are the principle tissues expressingduffy. Fy(-A-B) individuals do not express duffy in the bone marrow, however they do, inpostcapillary venule endothelium
Orthologs for DARC
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DARC gene from 4 species
About this table Species with no ortholog for DARC ENSEMBL Gene Tree for DARC Paralogs for DARC (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for DARC (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: DUFFY_HUMAN, Q16570 Polymorphism : DARC is responsible for the Duffy blood group system. The molecular basis of theFy(A)=Fy1/Fy(B)=Fy2 blood group antigens is a single variation in position 42; Gly-42 correspondsto Fy(A) and Asp-42 to Fy(B) Polymorphism : Genetic variation in DARC is associated with white blood cell count quantitativetrait locus type 1 (WBCQ1) [MIM:611862]. Peripheral white blood cell count (WBC) is a commonclinical measurement, used to determine evidence of acute infammation or infection. Peripheral WBCis the sum of several cell types including neutrophils and lymphocytes, which are the most commontypes of WBC, as well as less common cell types such as eosinophils, basophils, and monocytes.Elevated WBC has been associated with risk of coronary heart disease, cancer, and all-causemortality. White blood cell levels have widespread clinical applications including assessment ofpatients undergoing chemotherapy and evaluation of infection
HapMap Linkage Disequilibrium images for DARC (up to first 250kb)
Disorders & Mutations for DARC
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 110700 UniProtKB/Swiss-Prot: DUFFY_HUMAN, Q16570
Individuals that do not produce the Duffy antigen (FY(A-B-)) are more resistant to vivaxmalaria. This allele is found predominantly in population of African origin
10/21 Novoseek disease relationships for DARC gene (see all 21
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
herpes simplex
83.92
72
8388365 (2), 12021353 (2), 7911177 (2), 12885915 (2) (see all 66 )
pseudorabies
68.28
2
11162814 (1), 15534229 (1)
genital herpes
64.02
3
7911177 (2), 8158042 (1)
herpes
53.58
6
11162814 (1), 18468509 (1), 18358807 (1), 17390046 (1) (see all 5 )
viral shedding
49.00
1
8158042 (1)
hemolytic disease
37.95
1
9531948 (1)
drug addiction
37.94
7
11019561 (2), 17037343 (1), 15675365 (1), 16734277 (1)
malaria
34.76
6
18621004 (1), 10712211 (1), 15720550 (1), 10960522 (1) (see all 5 )
drug dependence
33.07
5
17037343 (3), 11019561 (1), 15160890 (1)
virus infection
29.84
3
8388365 (1), 2164044 (1), 12885915 (1)
About this table Blood Group Antigen Gene Mutation Database (BGMUT) Duffy blood group system Human Gene Mutation Database : DARC Human Genome Epidemiology Navigator: DARC (21 documents)
Medical News for DARC (Possibly Related Articles in
Doctor's Guide )
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Publications for DARC (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/209 PubMed articles for DARC gene (see all 209
): Cloning of glycoprotein D cDNA, which encodes the major subunit of the Duffy blood group system and the receptor for the Plasmodium vivax malaria parasite. (PubMed id 8248172) 1, 2, 3, 4 Chaudhuri A....Pogo A. (1993) Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals. (PubMed id 7663520) 2, 3, 4 Tournamille C....Le Van Kim C. (1995) Genomic organization of the glycoprotein D gene: Duffy blood group Fya/Fyb alloantigen system is associated with a polymorphism at the 44-amino acid residue. (PubMed id 7833467) 1, 3, 4 Iwamoto S.... Ikemoto S. (1995) Arg89Cys substitution results in very low membrane expression of the Duffy antigen/receptor for chemokines in Fy(x) individuals. (PubMed id 9731074) 1, 3, 4 Tournamille C.... Colin Y. (1998) Structure-function analysis of the extracellular domains of the Duffy antigen/receptor for chemokines: characterization of antibody and chemokine binding sites. (PubMed id 12956774) 1, 3, 4 Tournamille C.... Le Van Kim C. (2003) Molecular basis and PCR-DNA typing of the Fya/fyb blood group polymorphism. (PubMed id 7705836) 1, 3, 4 Tournamille C.... Colin Y. (1995) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Emergence of FY*A(null) in a Plasmodium vivax-endemic region of Papua New Guinea. (PubMed id 10570183) 3, 4 Zimmerman P.A....Kazura J.W. (1999) The Fy(x) phenotype is associated with a missense mutation in the Fy(b) allele predicting Arg89Cys in the Duffy glycoprotein. (PubMed id 9886340) 3, 4 Olsson M.L.... Daniels G. (1998)
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Genome Databases showing DARC
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing DARC
(According to HUGE )
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Specialized Databases showing DARC (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
dbRBC/BGMUT http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/systems_info&system=duffy GeneReviews http://www.genetests.org/query?gene=DARC Wikipedia http://en.wikipedia.org/wiki/Duffy_antigen
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-- Services for DARC (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for DARC:
Recombinant Proteins (DARC ) Antibodies (DARC )
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Incremental update: 13 Oct 2009