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Aliases & Descriptions for DAPK1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DAPK 1, 2, 3 | | DKFZp781I035 2 | | EC 2.7.11.1 3 |
| | | Descriptions |
|---|
| DAP kinase 1 3 | | death-associated protein kinase 1 2 |
|
| | Search outside databases for aliases for DAPK1 genePrevious GC identifers: GC09P081156 GC09P081966 GC09P083667 GC09P085569 GC09P087342 |
Summaries for DAPK1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for DAPK1: Death-associated protein kinase 1 is a positive mediator of gamma-interferon induced programmed cell death. DAPK1 encodes a structurally unique 160-kD calmodulin dependent serine-threonine kinase that carries 8 ankyrin repeats and 2 putative P-loop consensus sites. It is a tumor suppressor candidate. [provided by RefSeq] UniProtKB/Swiss-Prot: DAPK1_HUMAN, P53355Function: Calcium/calmodulin-dependent serine/threonine kinase which acts as a positive regulator of apoptosisGene Wiki entry for DAPK1 |
Genomic Location for DAPK1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the DAPK1 gene 
Entrez Gene cytogenetic band: 9q34.1 Ensembl cytogenetic band: 9q21.33 HGNC cytogenetic band: 9q34.1DAPK1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P089301:
(about GC identifiers)
Start:
|
89,302,576 bp from pter |
End:
|
89,513,369 bp from pter |
Size:
|
210,794 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000009.10 NT_023935.17
| Proteins for DAPK1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: DAPK1_HUMAN, P53355 (See
protein sequence)Recommended Name: Death-associated protein kinase 1 Size: 1430 amino acids; 160073 Da
Cofactor: Magnesium
Subcellular location: Cytoplasm. Note=Colocalizes with the actin filament system
Sequence caution: Sequence=CAA53712.1; Type=Frameshift; Positions=462, 464;
PDB structures from and Proteopedia :1IG1 (3D)
 1JKK (3D)
 1JKL (3D)
 1JKS (3D)
 1JKT (3D)
 1P4F (3D)
 1WVW (3D)
 1WVX (3D)
 1WVY (3D)
 1YR5 (3D)
 3EH9 (3D)
 3EHA (3D)
 3F5G (3D)
 3F5U (3D)
 
Secondary accessions: Q14CQ7 Q68CP8 Q9BTL8Alternative splicing: 2 isoforms: P53355-1 P53355-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004929.2
ENSEMBL proteins: ENSP00000350785 ENSP00000386135
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: DAPK1 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for DAPK1: Assays for DAPK1: | Protein
Domains/ Families for DAPK1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P53355
ProtoNet protein and cluster: P53355 1 Blocks protein family: IPB000488 Death domain
UniProtKB/Swiss-Prot: DAPK1_HUMAN, P53355Similarity: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. DAP kinase subfamilySimilarity: Contains 10 ANK repeatsSimilarity: Contains 1 death domainSimilarity: Contains 1 protein kinase domain | Gene Function for DAPK1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004938
Applied Biosystems Silencer® siRNAs for DAPK1
Sigma-Aldrich siRNA and siRNA Panels for DAPK1  Sigma-Aldrich shRNA Panels and shRNA for DAPK1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004938                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004938                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004938 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004938
UniProtKB/Swiss-Prot: DAPK1_HUMAN, P53355Function: Calcium/calmodulin-dependent serine/threonine kinase which acts as a positive regulator of apoptosisCatalytic activity: ATP + a protein = ADP + a phosphoproteinEnzyme regulation: Negatively regulated by autophosphorylation on Ser-308Induction: Up-regulated following treatment with interferon-gammaEnzyme Number (IUBMB): EC 2.7.11.1 Genatlas biochemistry entry for DAPK1:DAP kinase,160kDa,coupling the control of apoptosis to metastasis,triggered by IFNG,localized to the actin microfilament network2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Dapk1):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for DAPK1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for DAPK1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for DAPK1 
5/6 Interacting proteins for DAPK1 (P533551, 2) via UniProtKB, MINT, and/or STRING (see all 6
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for DAPK1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for DAPK1 6 Novoseek chemical compound relationships for DAPK1 gene
About this table
|
Transcripts for DAPK1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004938
Sigma-Aldrich siRNA and siRNA Panels for DAPK1  Sigma-Aldrich shRNA Panels and shRNA for DAPK1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004938 REFSEQ mRNAs for DAPK1 gene: NM_004938.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004938               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004938                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004938                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004938  Additional cDNA sequence: EF090258.1 14 DOTS entries: DT.449320 DT.92433148 DT.40121399 DT.95229766 DT.75124125 DT.97813727 DT.97810796 DT.121189199 DT.91839838 DT.91862442 DT.97773110 DT.100658969 DT.102839048 DT.92433149 24/217 AceView cDNA sequences (see all 217
):BX337929 AI678988 BQ645922 T29354 BE502994 AL531618 AI378628 BX096066 CK904559 BM682968 W60210 AW674416 AW072599 AW304956 T17329 AI375765 AL708910 AI679983 BF110628 AW663351 AL707694 CB121221 BE302335 AI242189
highest scoring ESTs for DAPK1:X76104 AA024655 AA025275 AA333288 AA337408 AA367971 AA455492 AA455493 AA846231 AA912826 Unigene Clusters for DAPK1: Death-associated protein kinase 1 Hs.380277 [show with all ESTs], Hs.693441 Unigene Representative Sequences: NM_004938, EF090258
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for DAPK1 (see all 8
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16a | · | 16b | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20 | ^ | 21 | ^ | |
| SP1: | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 22a | · | 22b | ^ | 23 | ^ | 24 | ^ | 25 | ^ | 26a | · | 26b | ^ | 27a | · | 27b | ^ | 28 | ^ | 29 | |
| SP1: | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for DAPK1
2 Ensembl transcripts including schematic representations: ENST00000358077
ENST00000408954
|
Expression for DAPK1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| DAPK1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for DAPK1
1 / 2 / 3 6 probe-sets matching DAPK1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TATGGAATCC
SOURCE GeneReport for Unigene clusters: Hs.380277 Hs.693441
Expression variation in blood from EXPOLDB for DAPK1 |
Orthologs for DAPK1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for DAPK1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for DAPK1
ENSEMBL Gene Tree for DAPK1 | Paralogs for DAPK1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for DAPK1 gene
- DAPK22 DAPK32 MYLK2
|
SNPs/Variants for DAPK1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for DAPK1 (up to first 250kb)
|
Disorders & Mutations for DAPK1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600831
10/51 Novoseek disease relationships for DAPK1 gene (see all 51
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tumors |
58.22 |
133 |
16476779 (6), 15099958 (4), 16094112 (4), 17803936 (3) (see all 67) |
| cancer |
52.46 |
30 |
16256792 (2), 16142356 (2), 16928264 (2), 16043258 (1) (see all 19) |
| nsclc |
51.70 |
18 |
17606310 (2), 15797047 (2), 15542809 (2), 14737938 (2) (see all 10) |
| primary tumor |
49.61 |
5 |
12684406 (2), 17570703 (1), 11309270 (1), 12684420 (1) |
| cervical squamous cell carcinoma |
49.22 |
3 |
18799028 (1), 16142356 (1) |
| bladder cancer |
47.74 |
8 |
11839665 (2), 15569975 (2), 18070176 (1), 11751381 (1) (see all 5) |
| cervical cancer |
44.66 |
25 |
18425396 (5), 18799028 (4), 16803511 (4), 16928264 (3) (see all 8) |
| pleural effusion malignant |
40.49 |
4 |
17285579 (1), 17696735 (1) |
| cancer lung |
37.89 |
12 |
12912953 (4), 15709192 (1), 12684406 (1), 16870044 (1) (see all 8) |
| microsatellite instability |
37.41 |
1 |
16819711 (1) |
About this table
1 PharmGKB disease relationship for DAPK1 geneAbout this table
Human Gene Mutation Database: DAPK1 Genetic Association Database: DAPK1 Human Genome Epidemiology Navigator: DAPK1 (6 documents)
|
Medical News for DAPK1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for DAPK1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/253 PubMed articles for DAPK1 gene (see all 253
):- The pro-apoptotic function of death-associated protein kinase is controlled by a unique inhibitory autophosphorylation-based mechanism. (PubMed id 11579085)3, 4 Shohat G.... Kimchi A. (2001)
- Death-associated protein kinase-related protein 1, a novel serine/threonine kinase involved in apoptosis. (PubMed id 10629061)3, 4 Inbal B.... Kimchi A. (2000)
- Identification of a novel serine/threonine kinase and a novel 15-kD protein as potential mediators of the gamma interferon-induced cell death. (PubMed id 7828849)3, 4 Deiss L.P....Kimchi A. (1995)
- Assignment of DAP1 and DAPK--genes that positively mediate programmed cell death triggered by IFN-gamma--to chromosome regions 5p12.2 and 9q34.1, respectively. (PubMed id 8530096)2, 3 Feinstein E....Huebner K. (1995)
- Promoter methylation of death-associated protein kinase and its role in irradiation response in cervical cancer. (PubMed id 18425396)1, 3 Leung R.C....Ngan H.Y. (2008)
- Promoter methylation and down-regulation of DAPK is associated with gastric atrophy. (PubMed id 14612952)1, 3 Kim W.S....Park C. (2003)
- The tumor suppressor death-associated protein kinase targets to TCR-stimulated NF-kappaB activation. (PubMed id 18292548)1, 3 Chuang Y.T....Lai M.Z. (2008)
- Bidirectional signals transduced by DAPK-ERK interaction promote the apoptotic effect of DAPK. (PubMed id 15616583)1, 3 Chen C.H....Chen R.H. (2005)
- Regulation of death-associated protein kinase. Stabilization by HSP90 heterocomplexes. (PubMed id 17324930)1, 3 Zhang L....Gallagher P.J. (2007)
- Reduced expression of death-associated protein kinase in human uterine and ovarian carcinoma cells. (PubMed id 14767518)1, 3 Bai T....Umesaki N. (2004)
|
Search for DAPK1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing DAPK1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing DAPK1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing DAPK1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| Licensable Technologies for DAPK1 gene:
| Services for DAPK1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for DAPK1:

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| Antibodies & Assays for DAPK1  (DAPK1 Kinase) |
| | | | Search Tocris compounds for DAPK1 |
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Incremental update: 13 Oct 2009
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