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Aliases & Descriptions for DAP3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DAP-3 1 , 2 , 3 DKFZp686G12159 1 , 2 MGC126058 1 , 2 MGC126059 1 , 2 MRP-S29 1 , 2 , 3 MRPS29 1 , 2 , 3 OTTHUMP00000033480 2 OTTHUMP00000033481 2 S29mt 3 bMRP-10 1 , 2
Descriptions Death-associated protein 3 2 , 3 Ionizing radiation resistance conferring protein 3 death associated protein 3 2 mitochondrial 28S ribosomal protein S29 2
Search outside databases for aliases for DAP3 genePrevious GC identifers: GC01P153522 GC01P151406 GC01P152436 GC01P152875 GC01P152471
Summaries for DAP3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for DAP3 : Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in proteinsynthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28Ssubunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition comparedto prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalianmitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among differentspecies, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes inbiochemical properties, which prevents easy recognition by sequence homology. This gene encodes a28S subunit protein that also participates in apoptotic pathways which are initiated by tumornecrosis factor-alpha, Fas ligand, and gamma interferon. This protein potentially binds ATP/GTPand might be a functional partner of the mitoribosomal protein S27. Splice variants that differ inthe 5' UTR have been found for this gene; both variants encode the same protein. Pseudogenescorresponding to this gene are found on chromosomes 1q and 2q. [provided by RefSeq] UniProtKB/Swiss-Prot: RT29_HUMAN, P51398 Function : Involved in mediating interferon-gamma-induced cell death
Gene Wiki entry for DAP3
Genomic Location for DAP3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the DAP3 gene Entrez Gene cytogenetic band: 1q21-q22 Ensembl cytogenetic band: 1q22 HGNC cytogenetic band: 1q22 DAP3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P153925:
(about GC identifiers )
Start:
153,925,473 bp from pter
End:
153,975,425 bp from pter
Size:
49,953 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for DAP3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
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R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RT29_HUMAN, P51398 (See
protein sequence )Recommended Name: 28S ribosomal protein S29, mitochondrial Size : 398 amino acids; 45566 Da
Subunit : Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA andabout 30 distinct proteins
Subcellular location : Mitochondrion
Sequence caution : Sequence=AAA57443.1; Type=Frameshift; Positions=349;
Secondary accessions : Q13044 Q96Q20
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_004623.1 NP_387506.1 ENSEMBL proteins: ENSP00000341692 ENSP00000357320 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: DAP3 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for DAP3: Assays for DAP3:
Protein
Domains/ Families for DAP3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P51398 ProtoNet protein and cluster: P51398
1 Blocks protein family : IPB008092 Death associated protein 3 family signature Gene Function for DAP3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
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Clones , and
Q-PCR Products
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Millipore ,
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_033657 Applied Biosystems Silencer ® siRNAs for DAP3 Sigma-Aldrich siRNA for DAP3 Sigma-Aldrich shRNA Panels and shRNA for DAP3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004632                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004632                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004632  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004632 UniProtKB/Swiss-Prot: RT29_HUMAN, P51398 Function : Involved in mediating interferon-gamma-induced cell death
Genatlas biochemistry entry for DAP3 :death associated protein 3,ubiquitously expressed,involved in mediating interferon gamma inducedapoptosis,and as well as TNF and TNFRSF6 induced cell death,acting upstream caspases
5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Dap3) :1 Gene Ontology (GO) molecular function term (links to tree view) :
About this table
Pathways & Interactions for DAP3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for DAP3 5/8 Interacting proteins for DAP3 (P51398 1 , 2 ENSP00000341692 3 ) via UniProtKB, MINT, and/or STRING (see all 8
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for DAP3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for DAP3 1 Novoseek chemical compound relationship for DAP3 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
gtp
27.16
1
15908146 (1)
About this table
Transcripts for DAP3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_033657 Sigma-Aldrich siRNA for DAP3 Sigma-Aldrich shRNA Panels and shRNA for DAP3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004632 NM_033657
REFSEQ mRNAs for DAP3 gene (2 alternative transcripts): NM_004632.2 NM_033657.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004632 NM_033657
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004632                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004632                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004632  
Additional cDNA sequence: AK225869.1 AK293117.1 AK298201.1 AK302281.1 BC107487.1 BC107488.1 BT019494.1 CR590516.1 CR591643.1 CR592625.1 CR594396.1 CR594545.1 CR595833.1 CR607923.1 CR610352.1 CR612221.1 CR614148.1 CR615460.1 CR617063.1 CR617451.1 CR619968.1 CR620113.1 CR622457.1 CR624311.1 CR624714.1 CR749790.1 U18321.1 X83544.1
24/50 DOTS entries (see all 50
): DT.91762257 DT.87042637 DT.121381390 DT.40273529 DT.91762240 DT.100768038 DT.100681162 DT.100857371 DT.100681150 DT.86996667 DT.92069518 DT.100681160 DT.121381453 DT.121381419 DT.121381397 DT.40263059 DT.121381470 DT.92416344 DT.100643439 DT.121381441 DT.121381443 DT.87042635 DT.121381435 DT.121381345
24/643 AceView cDNA sequences (see all 643
):BU630590 BG576785 X83544 BX090311 CR592625 AI360964 BM460347 CR594396 AI702515 CF128802 CA445490 AI859934 CR610352 CA310637 BQ722134 CD513622 AA931558 CR594545 CA306852 BQ028486 AI954244 CR607923 AW675270 AI025888
highest scoring ESTs for DAP3 :U18321 AA031716 AA114167 AA129179 AA143772 AA155805 AA181819 AA206302 AA224565 AA256533
Unigene Cluster for DAP3: Death associated protein 3 Hs.516746 [show with all ESTs ] Unigene Representative Sequence: CR615460 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for DAP3 ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 SP1 :   -                           SP2 :                            
About this scheme ECgene alternative splicing isoforms for DAP3 2 Ensembl transcripts including schematic representations : ENST00000343043
ENST00000368336
Expression for DAP3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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DAP3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DAP3 1 / 2 / 3
7 probe-sets matching DAP3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGAGGAAGACSOURCE GeneReport for Unigene cluster: Hs.516746 Expression variation in blood from EXPOLDB for DAP3
UniProtKB/Swiss-Prot: RT29_HUMAN, P51398 Tissue specificity : Ubiquitous
Orthologs for DAP3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DAP3 gene from 5/13 species (see all 13
)
About this table Species with no ortholog for DAP3 ENSEMBL Gene Tree for DAP3 Paralogs for DAP3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for DAP3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for DAP3 (up to first 250kb)
Disorders & Mutations for DAP3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602074 2 Novoseek disease relationships for DAP3 gene
About this table Genetic Association Database: DAP3 Human Genome Epidemiology Navigator: DAP3 (2 documents)
Medical News for DAP3 (Possibly Related Articles in
Doctor's Guide )
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Publications for DAP3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/38 PubMed articles for DAP3 gene (see all 38
): Isolation of DAP3, a novel mediator of interferon-gamma-induced cell death. (PubMed id 7499268) 1, 2, 3, 4 Kissil J.L....Kimchi A. (1995) Association between genetic variation in the gene for death-associated protein-3 (DAP3) and adult asthma. (PubMed id 15179560) 1, 3, 6 Hirota T....Tamari M. (2004) Assignment of death associated protein 3 (DAP3) to human chromosome 1q21 by in situ hybridization. (PubMed id 9284927) 1, 2, 3 Kissil J.L. and Kimchi A. (1997) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. (PubMed id 11543634) 3, 4 Kenmochi N....Tanaka T. (2001) The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. (PubMed id 11279123) 3, 4 Cavdar Koc E....Spremulli L.L. (2001) Functional role of death-associated protein 3 (DAP3) in anoikis. (PubMed id 15302871) 1, 3 Miyazaki T....Reed J.C. (2004) TRAIL-induced apoptosis is independent of the mitochondrial apoptosis mediator DAP3. (PubMed id 12359235) 1, 3 Berger T. and Kretzler M. (2002) Identification of phosphorylation sites in mammalian mitochondrial ribosomal protein DAP3. (PubMed id 18227431) 1, 3 Miller J.L....Koc E.C. (2008) hNOA1 interacts with complex I and DAP3 and regulates mitochondrial respiration and apoptosis. (PubMed id 19103604) 1, 3 Tang T....Farquhar M.G. (2009)
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Genome Databases showing DAP3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing DAP3
(According to HUGE )
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Specialized Databases showing DAP3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Licensable Technologies for DAP3 gene: Services for DAP3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for DAP3:
Recombinant Proteins (DAP3 ) Antibodies (DAP3 )
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