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DAP Gene

protein-coding GIFtS: 57

GC05M010732

death-associated protein
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
DAP-1 ^³
DAP1 ^³
MGC99796 ^²

Descriptions
death-associated protein ^²

External Ids
HGNC: 2672¹
Entrez Gene: 1611²
UniProtKB: P51397³
Ensembl: ENSG00000112977⁷

Search outside databases for aliases for DAP gene

Previous GC identifer: GC05M010790

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for DAP:

This gene encodes a basic, proline-rich, 15-kD protein. The protein acts as a positive mediator of

programmed cell death that is induced by interferon-gamma. [provided by RefSeq]

UniProtKB/Swiss-Prot: DAP1_HUMAN, P51397

Function: Involved in mediating interferon-gamma-induced cell death

Gene Wiki entry for DAP

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the DAP gene

Entrez Gene cytogenetic band: 5p15.2 Ensembl cytogenetic band: 5p15.2 HGNC cytogenetic band: 5p15.2

DAP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure

GeneLoc location for GC05M010732: (about GC identifiers)

Start:	10,732,342 bp from pter
End:	10,814,387 bp from pter
Size:	82,046 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000005.8 NT_006576.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: DAP1_HUMAN, P51397 (See protein sequence)

Recommended Name: Death-associated protein 1

Size: 102 amino acids; 11165 Da

Secondary accessions: Q6FGC3 Q9BUC9

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_004385.1

ENSEMBL proteins:

ENSP00000230895 ENSP00000353702

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (DAP1)
	Human Recombinant Proteins from Abnova (DAP)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

Antibodies for DAP:

	Browse Antibodies Central at Invitrogen
	Millipore Mono- and Polyclonal Antibodies for the study of DAP
	Sigma-Aldrich Antibody Arrays and Antibodies for DAP
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (DAP1), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (DAP)
	Novus Biologicals Antibody for DAP

Assays for DAP:

	Browse Invitrogen for biochemical assays
	Millipore Kits and Assays for the Analysis of DAP
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: P51397

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (DAP)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004394

Applied Biosystems Silencer® siRNAs for DAP

Sigma-Aldrich siRNA for DAP

Sigma-Aldrich shRNA Panels and shRNA for DAP

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for DAP
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_004394
Myc/DDK tagged cDNA clone in CMV expression vector: NM_004394
untagged cDNA clone in CMV expression vector: NM_004394

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_004394

UniProtKB/Swiss-Prot: DAP1_HUMAN, P51397

Function: Involved in mediating interferon-gamma-induced cell death

Genatlas biochemistry entry for DAP:

positive mediator of apoptosis,15kDa,triggered by interferon gamma,death associated protein 1

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for DAP

5/15 Interacting proteins for DAP (ENSP00000353702³) via UniProtKB, MINT, and/or STRING (see all 15 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
DAPK3	ENSP00000301264³	STRING (score=.95)
RPS6P1	ENSP00000369757³	STRING (score=.892)
IFNG	ENSP00000229135³	STRING (score=.757)
MGMT	ENSP00000302111³	STRING (score=.75)
RASSF1	ENSP00000352323³	STRING (score=.748)

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2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006915	apoptosis	IEA	--
GO:0008624	induction of apoptosis by extracellular signals	TAS	7828849

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for DAP

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (DAP)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004394

Sigma-Aldrich siRNA for DAP

Sigma-Aldrich shRNA Panels and shRNA for DAP

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_004394

REFSEQ mRNAs for DAP gene:

NM_004394.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_004394

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004394
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_004394
                                 untagged cDNA clone in CMV expression vector: NM_004394

Additional cDNA sequence:

AF056450.1 AK298670.1 AK311783.1 BC002726.2 BT006925.1 CR542184.1 CR593707.1 CR607145.1

CR607455.1 X76105.1

18 DOTS entries:

DT.100848796 DT.97786156 DT.75121046 DT.99982408 DT.100848786 DT.100848795 DT.100848787 DT.92449320

DT.100848785 DT.95372900 DT.100640726 DT.100800411 DT.100848789 DT.92449311 DT.92449318 DT.95372894

DT.99942273 DT.100848780

24/692 AceView cDNA sequences (see all 692 ):

AI458835 BG121970 BE395490 AI302957 BU623943 BQ669882 CA416638 AI219138

AA223229 AI346800 BI966875 BQ278819 AI084008 BF589455 CA415699 AI358843

AI936818 CF131214 AI936807 AA320020 BP363322 BM680380 AA588907 BG027119

highest scoring ESTs for DAP:

X76105 AL546055 AU128805 AU141228 AU143451 AU280008 BC002726 BE385922 BE391600 BE732531

Unigene Cluster for DAP:

Death-associated protein

Hs.75189 [show with all ESTs]

Unigene Representative Sequence: NM_004394

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:

ENST00000230895 ENST00000360512

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

DAP expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for DAP

¹ / ² / ³

3 probe-sets matching DAP gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
36199_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	X76105	1.00	1.00	1.00	1
201095_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_004394	0.60	1.00	0.82	1
201095_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks DAP for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: CATCTGTGAG

SOURCE GeneReport for Unigene cluster: Hs.75189
Expression variation in blood from EXPOLDB for DAP

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for DAP gene from 5/10 species (see all 10 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	DAP¹	--	death-associated protein	88.56(n) 97.06(a)	607300 XM_843925.1 XP_849018.1
chimpanzee (Pan troglodytes)	DAP¹	--	death-associated protein	98.69(n) 98.04(a)	744657 XM_001146681.1 XP_001146681.1
cow (Bos taurus)	DAP¹	--	death-associated protein	88.56(n) 96.08(a)	616066 XM_001249618.1 XP_001249619.1
rat (Rattus norvegicus)	Dap¹	--	death-associated protein	85.62(n) 92.16(a)	64322 NM_022526.1 NP_071971.1
mouse (Mus musculus)	Dap^{1, 5}	15⁵	death-associated protein^{1, 5}	86.6(n)¹ 96.08(a)¹	223453¹ NM_146057.2¹ NP_666169.1¹ AI789753⁵ AK014991⁵ (see all 19)

About this table Species with no ortholog for DAP

ENSEMBL Gene Tree for DAP

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/592 NCBI SNPs in DAP are shown (see all 592 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 267)

AB	SNP ID	Valid	Chr 5 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs7973^1,2	A,C,F,H	10732746(-)	`CTGTCA/GCCACC`	1	--	ut3¹ ese³		6		NS MN EU EA WA	780
	rs9857^1,2	A,C,F,H	10733547(+)	`TTCTTT/CGGCAT`	1	--	ut3¹		20		MN EU EA WA NS NA	3332
	rs10271^1,2	A,C,F	10733749(-)	`AATCTC/TAACAC`	1	--	ut3¹ ese³		10		MN NS	1216
	rs1049344^1,2	C,F,H	10733487(-)	`CGGCAC/TGGCAA`	1	--	ut3¹ ese³		5		NS EU EA WA	550
--	rs5745296^1,2	C,F,H	10734110(-)	`TTCCCT/CGACAG`	1	--	ut3¹ ese³		5		NS EU EA WA	562
	rs5745300^1,2	C,F,H	10733063(-)	`GCGTCC/TTCGAA`	1	--	ut3¹		6		NS MN EU EA WA	770
	rs5745297^1,2	C,F,H	10733997(-)	`CAGCTC/TCAGCC`	1	--	ut3¹ ese³		9		NS EU EA WA	982
	rs5745295^1,2	F,H	10734120(-)	`CACTTG/CGTATT`	1	--	ut3¹		5		NS EU EA WA	564
--	rs6878848^1,2	A,C	10815139(+)	`tttgcA/Ggtgta`	1	--	ng3¹		0	--	--	--	--
	rs16885126^1,2	F,H	10732167(+)	`CTGACA/GTTTTA`	1	--	ng5¹		7		NA EU EA WA	560

About this table

HapMap Linkage Disequilibrium images for DAP (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 600954

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/19 PubMed articles for DAP gene (see all 19 ):

Identification of a novel serine/threonine kinase and a novel 15-kD protein as potential mediators of the gamma interferon-induced cell death. (PubMed id 7828849)^{1, 2, 3, 4} Deiss L.P....Kimchi A. (1995)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{3, 4} Olsen J.V....Mann M. (2006)
Beyond linker histones and high mobility group proteins: global profiling of perchloric acid soluble proteins. (PubMed id 16602700)^{3, 4} Zougman A. and Wisniewski J.R. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Assignment of DAP1 and DAPK--genes that positively mediate programmed cell death triggered by IFN-gamma--to chromosome regions 5p12.2 and 9q34.1, respectively. (PubMed id 8530096)^{2, 3} Feinstein E....Huebner K. (1995)
Death associated proteins (DAPs): from gene identification to the analysis of their apoptotic and tumor suppressive functions. (PubMed id 9916995)^{1, 3} Levy-Strumpf N. and Kimchi A. (1998)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)⁴ Dephoure N.... Gygi S.P. (2008)
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. (PubMed id 17287340)⁴ Molina H.... Pandey A. (2007)
A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070)³ Stelzl U....Wanker E.E. (2005)
Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)³ Suzuki Y.... Sugano S. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 1611	HGNC: 2672	AceView: DAP	Ensembl:ENSG00000112977	euGenes: HUgn1611
ECgene: DAP	H-InvDB: DAP

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for DAP	Genetics and Cytogenetics in Oncology and Haematology
NIEHS-SNPs	http://egp.gs.washington.edu/data/dap/

Licensable Technologies for DAP
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for DAP:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for DAP-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for DAP		Antibodies for DAP
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for DAP		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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DAP Gene

protein-coding GIFtS: 57

Aliases &
Descriptions
for DAP

Summaries
for DAP

Genomic Location
for DAP

Proteins
for DAP

Protein Domains/
Families
for DAP

Gene Function
for DAP

Pathways & Interactions
for DAP

Drugs & Compounds
for DAP

Transcripts
for DAP

Expression
for DAP

Orthologs
for DAP

Paralogs
for DAP

SNPs/Variants
for DAP

Disorders & Mutations
for DAP

Medical News
for DAP

Publications
for DAP

Search for DAP

Genome Databases showing DAP

Other Databases showing DAP

Specialized Databases showing DAP

Licensable Technologies
for DAP

Services
for DAP

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

DAP Gene

protein-coding GIFtS: 57

Aliases & Descriptionsfor DAP

Summariesfor DAP

Genomic Locationfor DAP

Proteinsfor DAP

Protein Domains/Familiesfor DAP

Gene Functionfor DAP

Pathways & Interactionsfor DAP

Drugs & Compoundsfor DAP

Transcriptsfor DAP

Expression for DAP

Orthologsfor DAP

Paralogsfor DAP

SNPs/Variantsfor DAP

Disorders & Mutationsfor DAP

Medical Newsfor DAP

Publicationsfor DAP

Search for DAP

Genome Databases showing DAP

Other Databases showing DAP

Specialized Databases showing DAP

Licensable Technologiesfor DAP

Servicesfor DAP

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for DAP

Summaries
for DAP

Genomic Location
for DAP

Proteins
for DAP

Protein Domains/
Families
for DAP

Gene Function
for DAP

Pathways & Interactions
for DAP

Drugs & Compounds
for DAP

Transcripts
for DAP

Expression
for DAP

Orthologs
for DAP

Paralogs
for DAP

SNPs/Variants
for DAP

Disorders & Mutations
for DAP

Medical News
for DAP

Publications
for DAP

Licensable Technologies
for DAP

Services
for DAP