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DAO Gene

protein-coding   GIFtS: 60

GC12P107776
D-amino-acid oxidase
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
DAAO 2, 3
DAMOX 1, 2, 3, 5
EC 1.4.3.3 3
MGC35381 2
OXDA 2
Descriptions
D-amino-acid oxidase 2
External Ids
HGNC: 26711
Entrez Gene: 16102
UniProtKB: P149203
Ensembl: ENSG000001108877
Search outside databases for aliases for DAO gene

Previous GC identifers: GC12U990015 GC12P109154

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for DAO:
This gene encodes the peroxisomal enzyme D-amino acid oxidase. The enzyme is a flavoprotein which
uses flavin adenine dinucleotide (FAD) as its prosthetic group. Its substrates include a wide
variety of D-amino acids, but it is inactive on the naturally occurring L-amino acids. Its
biological function is not known; it may act as a detoxifying agent which removes D-amino acids
that accumulate during aging. In mice, it degrades D-serine, a co-agonist of the NMDA receptor.
This gene may play a role in the pathophysiology of schizophrenia. [provided by RefSeq]

UniProtKB/Swiss-Prot: OXDA_HUMAN, P14920
Function: Regulates the level of the neuromodulator D-serine in the brain. Has high activity
towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which
removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a
preference for those having small hydrophobic side chains followed by those bearing polar,
aromatic, and basic groups. Does not act on acidic amino acids

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the DAO gene  

Entrez Gene cytogenetic band: 12q24   Ensembl cytogenetic band:  12q24.11   HGNC chromosome: 12

DAO Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12P107776:     (about GC identifiers)

Start:
107,797,986 bp from pter
End:
107,818,839 bp from pter
Size:
20,854 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000012.10  NT_019546.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: OXDA_HUMAN, P14920 (See protein sequence)
Recommended Name: D-amino-acid oxidase  
Size: 347 amino acids; 39474 Da
Cofactor: FAD
Subunit: Homodimer
Subcellular location: Peroxisome
PDB structures from and Proteopedia :
2DU8 (3D)    2E48 (3D)    2E49 (3D)    2E4A (3D)    2E82 (3D)    2GNZ (3D)    3CUK (3D)    
Secondary accessions: Q16758 Q8N6R2

REFSEQ proteins: NP_001908.3  

ENSEMBL proteins: 
ENSP00000228476 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (D Amino Acid Oxidase)
Human Recombinant Proteins from Abnova (DAO)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

1 Gene Ontology (GO) cellular component term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005777 peroxisome NAS2901986
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Antibodies for DAO: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for DAO
Browse R&D Systems for Antibodies
Antibodies from Abcam (D Amino Acid Oxidase), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (DAO)
Novus Biologicals Antibodies for DAO

Assays for DAO: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

3 InterPro domains/families:
 IPR006076 FAD-dep_OxRdtase
 IPR016040 NAD(P)-bd_dom
 IPR006181 D-amino_acid_oxidase_CS


   GeneDecks  DAO for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P14920

ProtoNet protein and cluster: P14920

1 Blocks protein family: IPB006181 D-amino acid oxidase

UniProtKB/Swiss-Prot: OXDA_HUMAN, P14920
Similarity: Belongs to the DAMOX/DASOX family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (DAO)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (DAO)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001917

              Applied Biosystems Silencer® siRNAs for DAO

              Sigma-Aldrich siRNA and siRNA Panels for DAO  
                     Sigma-Aldrich shRNA for DAO  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for DAO
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001917
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_001917
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_001917 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_001917

UniProtKB/Swiss-Prot: OXDA_HUMAN, P14920
Function: Regulates the level of the neuromodulator D-serine in the brain. Has high activity
towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which
removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a
preference for those having small hydrophobic side chains followed by those bearing polar,
aromatic, and basic groups. Does not act on acidic amino acids
Catalytic activity: A D-amino acid + H(2)O + O(2) = a 2-oxo acid + NH(3) + H(2)O(2)
Biophysicochemical properties: Kinetic parameters: KM=3.6 mM for D-serine; KM=1.7 mM for D-proline;
KM=1.1 mM for D-tyrosine; KM=1.5 mM for D-DOPA; KM=1.2 mM for D-phenylalanine; KM=0.9 mM for
D-alanine;
Enzyme Number (IUBMB): EC 1.4.3.3 

Genatlas biochemistry entry for DAO:
D-amino-oxidase,glycine oxidase catalyzing the synthesis of glyoxylate,peroxisomal

3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Dao):

behavior/neurologicalhomeostasis/metabolismnervous system

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0003884 D-amino-acid oxidase activity TAS1356107
GO:0005488 binding IEA--
GO:0016491 oxidoreductase activity IEA--
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(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for  DAO  (Your Favorite Gene powered by Ingenuity) 
 Arginine and Proline Metabolism
 Glycine, Serine and Threonine Metabolism
 D-arginine and D-ornithine Metabolism

   GeneDecks  DAO for the pathways selected above  
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3 Kegg Pathways  (Kegg details for DAO):
 hsa00260 Glycine, serine and threonine metabolism
 hsa00330 Arginine and proline metabolism
 hsa00472 D-Arginine and D-ornithine metabolism

   GeneDecks  DAO for the pathways selected above  
About GeneDecksing
 Gene Network CentralTM Interacting Genes and Proteins Network for  DAO 


5/18 Interacting proteins for DAO (ENSP000002284763) via UniProtKB, MINT, and/or STRING (see all 18 )
InteractantInteraction Details
GeneCardExternal ID(s)
HAO1ENSP000003680663STRING (score=.926)
PIPOXENSP000003177213STRING (score=.905)
AGXTENSP000003026203STRING (score=.899)
ALAS1ENSP000003092593STRING (score=.899)
ALAS2ENSP000003323693STRING (score=.899)
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2 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006551 leucine metabolic process IEA--
GO:0055114 oxidation reduction IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for DAO
10/28 Novoseek chemical compound relationships for DAO gene (see all 28 )
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
glutaryl-7-aminocephalosporanic acid 77.68 6 15269545 (2), 10972935 (1), 16809100 (1)
7-aminocephalosporanic acid 77.59 11 15269545 (3), 12024974 (2), 10972935 (1), 16809100 (1)
flavin 75.52 38 9153426 (3), 17088322 (3), 8690726 (3), 10716694 (2) (see all 14)
cephalosporin c 71.50 6 15269545 (3), 16809100 (1)
pipecolic acid 70.21 5 11330064 (3), 8892018 (1)
trigonelline 63.78 8 1975807 (3), 10920257 (1)
alpha-ketoisovalerate 62.34 2 1682335 (1), 9153426 (1)
cerium 61.84 4 1682047 (2), 1347269 (1), 7907383 (1)
flavin-adenine dinucleotide 61.66 4 8782713 (2), 1431554 (1), 7785760 (1)
riboflavin 44.96 1 1971765 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (DAO)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (DAO)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001917

              Sigma-Aldrich siRNA and siRNA Panels for DAO  
                     Sigma-Aldrich shRNA for DAO  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_001917  

REFSEQ mRNAs for DAO gene: 

NM_001917.4   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_001917  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001917
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_001917
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_001917 

Additional cDNA sequence: 

AK312995.1 BC029057.1 BC074770.2 BX538210.1 

4 DOTS entries:

DT.406423  DT.101980700  DT.92419491  DT.95086560 

24/38 AceView cDNA sequences (see all 38 ):

BC029057 AX776478 BX538210 BE463940 AI791352 AI478185 AV727558 BM685098 
AX776479 AX786386 BF115205 BC074770 AI470939 AX776480 BX115127 BM717775 
AI732956 BM679799 BE464053 AA953563 AW299839 AW299997 BF593275 BX488551 

highest scoring ESTs for DAO:

AA863145 AA953563 AI470939 AI478185 AI492427 AW299839 AW299997 AW779822 BC029057 BE463682 

Unigene Cluster for DAO:

D-amino-acid oxidase
Hs.113227  [show with all ESTs]
Unigene Representative Sequence: NM_001917


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:
ENST00000228476  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

DAO expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for DAO

1 / 2 / 3

3 probe-sets matching DAO gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
34464_at2, 3 U95-A 1 0.94 1.00 1.00 1.00 X13227 0.80 1.00 0.91 1

206878_at2, 3 U133-A 1 0.91 1.00 -- -- NM_001917 0.60 1.00 0.82 1

206878_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
GeneDecks  DAO for binary patterns associated with the probe-sets selected above  
About GeneDecksing
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: AGTCTTCAGA

SOURCE GeneReport for Unigene cluster: Hs.113227

Expression variation in blood from EXPOLDB for DAO

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for DAO gene from 5/11 species (see all 11 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
DAO1   -- D-amino-acid oxidase 87.13(n)
83.29(a)
486317  XM_543443.2  XP_543443.2 
chimpanzee
(Pan troglodytes)
DAO1   -- D-amino-acid oxidase 98.85(n)
97.84(a)
743881  XM_001164209.1  XP_001164209.1 
cow
(Bos taurus)
DAO1   -- D-amino-acid oxidase 87.8(n)
83.29(a)
615334  XM_867833.1  XP_872926.1 
rat
(Rattus norvegicus)
Dao1   -- D-amino-acid oxidase 82.47(n)
80.64(a)
114027  NM_053626.1  NP_446078.1 
mouse
(Mus musculus)
Dao1, 5 5 (65.00 cM)5
D-amino acid oxidase1, 5 82.13(n)1
80.87(a)1
131421  NM_010018.21  NP_034148.21 
 AI5304955  AI9879635  (see all 13)
About this table        Species with no ortholog for DAO

ENSEMBL Gene Tree for DAO
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for DAO gene
DDO2  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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10/174 NCBI SNPs in DAO are shown (see all 174 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 42)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 12 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
--
rs46239511,2
A,C,F,H107796180(+) AAGGGT/CCATAT 1 -- ng518Minor allele frequency- C:0.26EU EA WA NA 574
--
rs108619731,2
A,C,F,H107796057(+) ACACCA/GCAATT 1 -- ng513Minor allele frequency- G:0.43EU EA 300
--
rs111140811,2
F,H107797496(+) CTTGCA/GTCTCT 1 -- ng513Minor allele frequency- G:0.02EU EA 300
--
rs79658211,2
A,C107796816(+) tgatcC/Tatcca 1 -- ng510--------
--
rs42627661,2
H107818388(-) TTCTAC/ACAAAG 1 V/G mis14Minor allele frequency- A:0.00EU EA WA 358
rs10538751,2
H107818720(+) AGAAAA/GTCAAA 1 -- ut313Minor allele frequency- G:0.00EA WA 298
rs79804271,2
C,F,H107805439(+) ATCTCG/AGGCTA 1 S/S syn1 ese38Minor allele frequency- A:0.11NA EU EA WA 618
--
rs46446821,2
H107818389(-) ATTCTC/AACAAA 1 G/G syn14Minor allele frequency- A:0.00EU EA WA 406
--
rs21119021,2
A,C,F,H,O107802876(+) tgatgT/GtgTGC 1 -- int112Minor allele frequency- G:0.42NA EU EA WA 1464
rs37417751,2
A,C,F,H107807732(-) GGAAGT/GCACTT 1 -- int19Minor allele frequency- G:0.36NA EU EA WA 1310
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HapMap Linkage Disequilibrium images for DAO (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 124050   disorders: 181500  

9 Novoseek disease relationships for DAO gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
hypofunction 73.20 2 12625025 (1), 18378121 (1)
schizophrenia 71.39 121 17492767 (7), 18378121 (7), 16842973 (6), 17880399 (4) (see all 31)
bipolar disorder 51.25 10 18165970 (3), 14966479 (2), 18378121 (2), 16203746 (1) (see all 5)
zellweger syndrome 45.50 1 11330064 (1)
psychiatric disorder 5.16 2 16183301 (1)
tumors 4.59 1 14735461 (1)
nephrotic syndrome 4.36 3 9582550 (2)
renal disease 0.00 2 8496288 (1), 9582550 (1)
cancer 0.00 2 15651667 (1), 12564842 (1)
About this table

Genetic Association Database: DAO
Human Genome Epidemiology Navigator: DAO (40 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/150 PubMed articles for DAO gene (see all 150 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 1610 HGNC: 2671 AceView: DAO Ensembl:ENSG00000110887 euGenes: HUgn1610
ECgene: DAO H-InvDB: DAO
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for DAO:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for DAO-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for DAO Antibodies for DAO
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for DAO Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant & Natural Proteins  

 Recombinant Proteins (DAO)
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 Recombinant Proteins
(D Amino Acid Oxidase)
 Antibodies (D Amino Acid Oxidase)
 Search OriGene for DAO
 Search Tocris compounds for DAO




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for DAO

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