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DAK Gene

protein-coding   GIFtS: 56

GC11P060858
dihydroxyacetone kinase 2 homolog (S. cerevisiae)
(Previous name: dihydroxyacetone kinase 2 homolog (yeast) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
DKFZP586B1621 1
DKFZp586B1621 2
MGC5621 2
Descriptions
ATP-dependent dihydroxyacetone kinase 2
DHA kinase 2
Dha kinase/FMN cyclase 2
FAD-AMP lyase cyclic FMN forming 2
FAD-AMP lyase cyclizing 2
dihydroxyacetone kinase 2 2
dihydroxyacetone kinase 2 homolog (S. cerevisiae) 2
dihydroxyacetone kinase 2 homolog (yeast) 1
glycerone kinase 2
External Ids
HGNC: 245521
Entrez Gene: 260072
UniProtKB: Q3LXA33
Ensembl: ENSG000001494767
Search outside databases for aliases for DAK gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for DAK:
This gene is a member of the family of dihydroxyacetone kinases, which have a protein structure
distinct from other kinases. The product of this gene phosphorylates dihydroxyacetone, and also
catalyzes the formation of riboflavin 4',5'-phosphate (aka cyclin FMN) from FAD. Several
alternatively spliced transcript variants have been identified, but the full-length nature of only
one has been determined. [provided by RefSeq]

UniProtKB/Swiss-Prot: DHAK_HUMAN, Q3LXA3
Function: Catalyzes both the phosphorylation of dihydroxyacetone and the splitting of
ribonucleoside diphosphate-X compounds among which FAD is the best substrate

Gene Wiki entry for DAK

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the DAK gene  

Entrez Gene cytogenetic band: 11q12.2   Ensembl cytogenetic band:  11q12.2   HGNC cytogenetic band: 11q12.2

DAK Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P060858:     (about GC identifiers)

Start:
60,857,230 bp from pter
End:
60,872,807 bp from pter
Size:
15,578 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000011.8  NT_033903.7  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: DHAK_HUMAN, Q3LXA3 (See protein sequence)
Recommended Name: Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing)  
Size: 575 amino acids; 58977 Da
Cofactor: Magnesium (By similarity)
Cofactor: Manganese or cobalt; for FAD-AMP lyase activity (By similarity)
Subunit: Homodimer (By similarity)
Secondary accessions: Q53EQ9 Q9BVA7 Q9H895

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_056348.2  

    ENSEMBL proteins: 
    ENSP00000378360 ENSP00000310493 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (DAK)
    Human Recombinant Proteins from Abnova (DAK)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 


    Antibodies for DAK: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for DAK
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (DAK), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (DAK)
    Novus Biologicals Antibodies for DAK

    Assays for DAK: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR004007 Dak2
     IPR012734 DhaK_ATP
     IPR004006 Dak1


       GeneDecks  DAK for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q3LXA3

    ProtoNet protein and cluster: Q3LXA3

    2 Blocks protein families:
    IPB004006 Dak kinase domain
    IPB004007 Dak phosphatase domain


    UniProtKB/Swiss-Prot: DHAK_HUMAN, Q3LXA3
    Similarity: Belongs to the dihydroxyacetone kinase (DAK) family
    Similarity: Contains 1 DAK1 (dihydroxyacetone kinase subunit 1) domain
    Similarity: Contains 1 DAK2 (dihydroxyacetone kinase subunit 2) domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (DAK)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (DAK)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015533

                  Applied Biosystems Silencer® siRNAs for DAK

                  Sigma-Aldrich siRNA and siRNA Panels for DAK  
                         Sigma-Aldrich shRNA Panels and shRNA for DAK  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for DAK
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_015533
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_015533
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_015533 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_015533

    UniProtKB/Swiss-Prot: DHAK_HUMAN, Q3LXA3
    Function: Catalyzes both the phosphorylation of dihydroxyacetone and the splitting of
    ribonucleoside diphosphate-X compounds among which FAD is the best substrate
    Catalytic activity: ATP + glycerone = ADP + glycerone phosphate
    Catalytic activity: FAD = AMP + riboflavin cyclic-4',5'-phosphate
    Enzyme regulation: Each activity is inhibited by the substrate(s) of the other

    5 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166 nucleotide binding IEA--
    GO:0004371 glycerone kinase activity IEA--
    GO:0005524 ATP binding IEA--
    GO:0016740 transferase activity IEA--
    GO:0016829 lyase activity IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Kegg Pathway  (Kegg details for DAK):
     hsa00561 Glycerolipid metabolism

       GeneDecks  DAK for the pathways selected above  
    About GeneDecksing

    5/20 Interacting proteins for DAK (ENSP000003104933) via UniProtKB, MINT, and/or STRING (see all 20 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GPD1ENSP000003011493STRING (score=.928)
    GPD2ENSP000003086103STRING (score=.874)
    TPI1ENSP000003717053STRING (score=.844)
    PGK1ENSP000003624133STRING (score=.82)
    PGK2ENSP000003059953STRING (score=.818)
    About this table

    1 Gene Ontology (GO) biological process term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006071 glycerol metabolic process IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for DAK

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (DAK)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (DAK)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015533

                  Sigma-Aldrich siRNA and siRNA Panels for DAK  
                         Sigma-Aldrich shRNA Panels and shRNA for DAK  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_015533  

    REFSEQ mRNAs for DAK gene: 

    NM_015533.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_015533  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_015533
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_015533
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_015533 

    Additional cDNA sequence: 

    AK023915.1 AK094516.1 AK223580.1 AK308553.1 AL110260.1 BC001341.1 BC120929.1 CR593561.1 
    DQ138290.1 DQ344550.1 

    24/31 DOTS entries (see all 31 ):

    DT.100887611  DT.95291946  DT.100794636  DT.100692202  DT.100794639  DT.409045  DT.100794632  DT.100794637 
    DT.95209797  DT.120694308  DT.91756060  DT.95306474  DT.100794635  DT.91770183  DT.120694277  DT.120694245 
    DT.91905992  DT.97848309  DT.100030287  DT.100794634  DT.100794640  DT.120694197  DT.120694199  DT.120694208 

    24/279 AceView cDNA sequences (see all 279 ):

    BM856323 CR593561 NM_015533 BM834565 AA354853 BQ056458 BQ650326 BQ056098 
    BQ057535 BP350046 BM707939 BG120718 BQ928939 BM820134 BM561417 BG819948 
    BM820361 BF868362 CF530076 BQ063430 CD358913 BQ061010 BU542946 BQ054864 

    highest scoring ESTs for DAK:

    AA809956 AA962405 AA995380 AI589299 AI685406 AI889175 AK023915 AL110260 AL530013 AL581165 

    Unigene Cluster for DAK:

    Dihydroxyacetone kinase 2 homolog (S. cerevisiae)
    Hs.6278  [show with all ESTs]
    Unigene Representative Sequence: NM_015533


    GeneLoc Exon Structure

    5/15 Alternative Splicing Database (ASD) splice patterns (SP) for DAK (see all 15 )

    ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c · 2d ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ·
    SP1:                          -     -     -     -     -     -           -     -                                                           -           -     -   
    SP2:                                      -     -     -     -           -     -                                                           -                     
    SP3:                          -     -     -     -     -     -           -     -                       -     -     -     -     -     -     -     -     -     -   
    SP4:                          -           -     -     -     -           -     -                                                                                 
    SP5:                          -     -     -     -     -     -                 -                                                                                 

    ExUns: 11c ^ 12 ^ 13a · 13b · 13c ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^ 21a · 21b
    SP1:                    -     -                                                               
    SP2:                                                                                          
    SP3:  -     -     -     -     -     -     -     -     -     -                                 
    SP4:                                                                                          
    SP5:                                                                                          

    About this scheme

    ECgene alternative splicing isoforms for DAK

    2 Ensembl transcripts including schematic representations:
    ENST00000394900  ENST00000311463  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    DAK expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for DAK

    1 / 2 / 3

    7 probe-sets matching DAK gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    71827_at2, 3 U95-E 1 1.00 1.00 0.92 0.84 AI565170 0.60 1.00 0.82 1

    75777_at2, 3 U95-E 1 1.00 1.00 0.94 1.03 AA676980 0.40 1.00 0.76 1
    46570_at2, 3 U95-B 2 1.00 0.97 0.99 1.13 AI889175 0.80 1.00 0.91 1

    244627_at2, 3 U133-B 1 1.00 1.00 -- -- BE300882 0.40 1.00 0.76 1

    218688_at2, 3 U133-A 1 1.00 1.00 -- -- NM_015533 0.60 1.00 0.82 1

    244627_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    218688_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  DAK for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GAAGCAAGAA

    SOURCE GeneReport for Unigene cluster: Hs.6278
    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for DAK gene from 5/12 species (see all 12 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    DAK1   -- dihydroxyacetone kinase 2 homolog (S. cerevisiae) 89.62(n)
    91.48(a)
    483800  XM_540921.2  XP_540921.2 
    chimpanzee
    (Pan troglodytes)
    DAK1   -- dihydroxyacetone kinase 2 homolog (S. cerevisiae) 99.42(n)
    100(a)
    466626  XM_001147724.1  XP_001147724.1 
    cow
    (Bos taurus)
    DAK1   -- dihydroxyacetone kinase 2 homolog (S. cerevisiae) 89.51(n)
    93.21(a)
    512373  NM_001024524.1  NP_001019695.1 
    rat
    (Rattus norvegicus)
    Dak1   -- dihydroxyacetone kinase 2 homolog (S. cerevisiae) 83.83(n)
    85.91(a)
    361730  NM_001039031.1  NP_001034120.1 
    mouse
    (Mus musculus)
    Dak1, 5 195
    dihydroxyacetone kinase 2 homolog (yeast)1, 5 83.59(n)1
    85.39(a)1
    2259131  NM_145496.11  NP_663471.11 
     AK1389565  AK1714185  (see all 6)
    About this table        Species with no ortholog for DAK

    ENSEMBL Gene Tree for DAK
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/84 NCBI SNPs in DAK are shown (see all 84 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 77)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 11 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs22606551,2
    A,C,F,H60865550(+) TGGTCA/GCCAAG 1 A/T mis1 ese310Minor allele frequency- G:0.10EA EU WA NA 2408
    rs39727571,2
    C,F,H60871192(+) TTTCTC/TAGCAT 1 -- ut317Minor allele frequency- T:0.17EU EA WA NA 562
    rs122927341,2
    F,H60872064(+) AAATTT/CGGCTG 1 -- ut314Minor allele frequency- C:0.03EU EA WA 408
    rs357234061,2
    C,F60867922(+) TGCAGC/GAGCCT 1 A/G mis15Minor allele frequency- G:0.02NA EU EA WA 458
    rs25133291,2
    A,C,F,H60863468(+) GGCACC/GGTGCT 1 T/T syn1 ese38Minor allele frequency- G:0.21EU EA WA NA 630
    rs23054651,2
    A,C,F,H60869378(+) TCTGTT/CCTGCT 1 V/V syn16Minor allele frequency- C:0.08EA EU WA NA 1994
    --
    rs118263241,2
    C,F60867421(+) GCCCTG/CGTGGG 1 L/L syn1 ese31Minor allele frequency- C:0.03NA 60
    rs49395141,2
    A,C,F,H60866745(+) TCCTAC/AACCTC 1 -- int14Minor allele frequency- A:0.18EU EA WA 412
    rs37412681,2
    A,C,F,H60866251(+) CGGCTA/GTTCAA 1 -- int14Minor allele frequency- G:0.20EU EA WA 420
    rs25128091,2
    A,C,F,H60863101(-) TGGAAA/GGAGTG 1 -- int15Minor allele frequency- G:0.08EA EU WA 1912
    About this table

    HapMap Linkage Disequilibrium images for DAK (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

      --

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10 PubMed articles for DAK gene:
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 26007 HGNC: 24552 AceView: DKFZP586B1621 Ensembl:ENSG00000149476 euGenes: HUgn26007
    ECgene: DAK H-InvDB: DAK
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for DAK:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for DAK Antibodies for DAK
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for DAK Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for DAK

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