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Aliases & Descriptions for DAK
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DKFZP586B1621 1 | | DKFZp586B1621 2 | | MGC5621 2 |
| | | Descriptions |
|---|
| ATP-dependent dihydroxyacetone kinase 2 | | DHA kinase 2 | | Dha kinase/FMN cyclase 2 | | FAD-AMP lyase cyclic FMN forming 2 | | FAD-AMP lyase cyclizing 2 | | dihydroxyacetone kinase 2 2 | | dihydroxyacetone kinase 2 homolog (S. cerevisiae) 2 | | dihydroxyacetone kinase 2 homolog (yeast) 1 | | glycerone kinase 2 |
|
| | Search outside databases for aliases for DAK gene |
Summaries for DAK(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for DAK: This gene is a member of the family of dihydroxyacetone kinases, which have a protein structure distinct from other kinases. The product of this gene phosphorylates dihydroxyacetone, and also catalyzes the formation of riboflavin 4',5'-phosphate (aka cyclin FMN) from FAD. Several alternatively spliced transcript variants have been identified, but the full-length nature of only one has been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: DHAK_HUMAN, Q3LXA3Function: Catalyzes both the phosphorylation of dihydroxyacetone and the splitting of ribonucleoside diphosphate-X compounds among which FAD is the best substrateGene Wiki entry for DAK |
Genomic Location for DAK
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the DAK gene 
Entrez Gene cytogenetic band: 11q12.2 Ensembl cytogenetic band: 11q12.2 HGNC cytogenetic band: 11q12.2DAK Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P060858:
(about GC identifiers)
Start:
|
60,857,230 bp from pter |
End:
|
60,872,807 bp from pter |
Size:
|
15,578 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000011.8 NT_033903.7
| Proteins for DAK
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: DHAK_HUMAN, Q3LXA3 (See
protein sequence)Recommended Name: Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing) Size: 575 amino acids; 58977 Da
Cofactor: Magnesium (By similarity)
Cofactor: Manganese or cobalt; for FAD-AMP lyase activity (By similarity)
Subunit: Homodimer (By similarity)
Secondary accessions: Q53EQ9 Q9BVA7 Q9H895Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_056348.2
ENSEMBL proteins: ENSP00000378360 ENSP00000310493
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for DAK: Assays for DAK: | Protein
Domains/ Families for DAK(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q3LXA3
ProtoNet protein and cluster: Q3LXA3 2 Blocks protein families: IPB004006 Dak kinase domain IPB004007 Dak phosphatase domain
UniProtKB/Swiss-Prot: DHAK_HUMAN, Q3LXA3Similarity: Belongs to the dihydroxyacetone kinase (DAK) familySimilarity: Contains 1 DAK1 (dihydroxyacetone kinase subunit 1) domainSimilarity: Contains 1 DAK2 (dihydroxyacetone kinase subunit 2) domain | Gene Function for DAK
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015533
Applied Biosystems Silencer® siRNAs for DAK
Sigma-Aldrich siRNA and siRNA Panels for DAK  Sigma-Aldrich shRNA Panels and shRNA for DAK  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_015533                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015533                                  untagged cDNA clones in CMV expression vector (see all 2): NM_015533 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_015533
UniProtKB/Swiss-Prot: DHAK_HUMAN, Q3LXA3Function: Catalyzes both the phosphorylation of dihydroxyacetone and the splitting of ribonucleoside diphosphate-X compounds among which FAD is the best substrateCatalytic activity: ATP + glycerone = ADP + glycerone phosphateCatalytic activity: FAD = AMP + riboflavin cyclic-4',5'-phosphateEnzyme regulation: Each activity is inhibited by the substrate(s) of the other5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for DAK
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/20 Interacting proteins for DAK (ENSP000003104933) via UniProtKB, MINT, and/or STRING (see all 20
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006071 | glycerol metabolic process |
IEA | -- | About this table
|
Drugs & Compounds for DAK(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for DAK
|
Transcripts for DAK(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015533
Sigma-Aldrich siRNA and siRNA Panels for DAK  Sigma-Aldrich shRNA Panels and shRNA for DAK  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_015533 REFSEQ mRNAs for DAK gene: NM_015533.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_015533               OriGene GFP tagged cDNA clone in CMV expression vector: NM_015533                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015533                                  untagged cDNA clones in CMV expression vector (see all 2): NM_015533  Additional cDNA sequence: AK023915.1 AK094516.1 AK223580.1 AK308553.1 AL110260.1 BC001341.1 BC120929.1 CR593561.1 DQ138290.1 DQ344550.1 24/31 DOTS entries (see all 31
): DT.100887611 DT.95291946 DT.100794636 DT.100692202 DT.100794639 DT.409045 DT.100794632 DT.100794637 DT.95209797 DT.120694308 DT.91756060 DT.95306474 DT.100794635 DT.91770183 DT.120694277 DT.120694245 DT.91905992 DT.97848309 DT.100030287 DT.100794634 DT.100794640 DT.120694197 DT.120694199 DT.120694208 24/279 AceView cDNA sequences (see all 279
):BM856323 CR593561 NM_015533 BM834565 AA354853 BQ056458 BQ650326 BQ056098 BQ057535 BP350046 BM707939 BG120718 BQ928939 BM820134 BM561417 BG819948 BM820361 BF868362 CF530076 BQ063430 CD358913 BQ061010 BU542946 BQ054864
highest scoring ESTs for DAK:AA809956 AA962405 AA995380 AI589299 AI685406 AI889175 AK023915 AL110260 AL530013 AL581165 Unigene Cluster for DAK: Dihydroxyacetone kinase 2 homolog (S. cerevisiae) Hs.6278 [show with all ESTs]Unigene Representative Sequence: NM_015533
GeneLoc Exon Structure
5/15 Alternative Splicing Database (ASD) splice patterns (SP) for DAK (see all 15
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3a | · | 3b | · | 3c | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | ^ | 10a | · | 10b | ^ | 11a | · | 11b | · | |
| SP1: | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | - |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |
| SP4: | |   | |   | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 11c | ^ | 12 | ^ | 13a | · | 13b | · | 13c | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18a | · | 18b | ^ | 19 | ^ | 20 | ^ | 21a | · | 21b | |
| SP1: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for DAK
2 Ensembl transcripts including schematic representations: ENST00000394900
ENST00000311463
|
Expression for DAK
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| DAK expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for DAK
1 / 2 / 3 7 probe-sets matching DAK gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GAAGCAAGAA
SOURCE GeneReport for Unigene cluster: Hs.6278
|
Orthologs for DAK
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for DAK gene from 5/12 species (see all 12
)
About this table Species with no ortholog for DAK
ENSEMBL Gene Tree for DAK | Paralogs for DAK(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for DAK(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for DAK (up to first 250kb)
|
Disorders & Mutations for DAK
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
| -- |
Medical News for DAK(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for DAK (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10 PubMed articles for DAK gene:- Identification of human and rat FAD-AMP lyase (cyclic FMN forming) as ATP-dependent dihydroxyacetone kinases. (PubMed id 16289032)1, 3, 4 Cabezas A....Cameselle J.C. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Negative regulation of MDA5- but not RIG-I-mediated innate antiviral signaling by the dihydroxyacetone kinase. (PubMed id 17600090)3 Diao F....Shu H.B. (2007)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)3 Kimura K.... Sugano S. (2006)
- A comprehensive update of the sequence and structure classification of kinases. (PubMed id 15771780)3 Cheek S....Grishin N.V. (2005)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)3 Strausberg R.L....Marra M.A. (2002)
- Construction and characterization of a full length-enriched and a 5'- end-enriched cDNA library. (PubMed id 9373149)3 Suzuki Y.... Sugano S. (1997)
- Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)3 Maruyama K. and Sugano S. (1994)
- EDD, a novel phosphotransferase domain common to mannose transporter EIIA, dihydroxyacetone kinase, and DegV. (PubMed id 15632288)1 Kinch L.N....Grishin N.V. (2005)
|
Search for DAK
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing DAK
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing DAK
(According to HUGE)
About This Section
| -- |
Specialized Databases showing DAK(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for DAK(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for DAK:

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| | Recombinant Proteins (DAK) | | Antibodies (DAK) |
| | | Search Tocris compounds for DAK |
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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