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Aliases for D21S2088E Gene

Subcategory (RNA class) for D21S2088E Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for D21S2088E Gene

  • D21S2088E 3

External Ids for D21S2088E Gene

ORGUL Members for D21S2088E Gene

Summaries for D21S2088E Gene

GeneCards Summary for D21S2088E Gene

D21S2088E (D21S2088E) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for D21S2088E Gene

Genomics for D21S2088E Gene

Genomic Location for D21S2088E Gene

Start:
23,361,104 bp from pter
End:
23,384,861 bp from pter
Size:
23,758 bases
Orientation:
Minus strand

Genomic View for D21S2088E Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for D21S2088E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for D21S2088E Gene

No data available for Regulatory Elements for D21S2088E Gene

Proteins for D21S2088E Gene

Post-translational modifications for D21S2088E Gene

No Post-translational modifications

No data available for DME Specific Peptides for D21S2088E Gene

Domains for D21S2088E Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for D21S2088E Gene

Function for D21S2088E Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for D21S2088E Gene

Localization for D21S2088E Gene

No data available for Gene Ontology (GO) - Cellular Components for D21S2088E Gene

Pathways for D21S2088E Gene

SuperPathways for D21S2088E Gene

No Data Available

Interacting Proteins for D21S2088E Gene

Gene Ontology (GO) - Biological Process for D21S2088E Gene

None

No data available for Pathways by source for D21S2088E Gene

Transcripts for D21S2088E Gene

mRNA/cDNA for D21S2088E Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for D21S2088E Gene

D21S2088E:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for D21S2088E Gene

No ASD Table

Relevant External Links for D21S2088E Gene

GeneLoc Exon Structure for
D21S2088E

Expression for D21S2088E Gene

mRNA expression in normal human tissues for D21S2088E Gene

mRNA differential expression in normal tissues according to GTEx for D21S2088E Gene

This gene is overexpressed in Brain - Substantia nigra (6.0), Brain - Spinal cord (cervical c-1) (5.8), Brain - Hippocampus (5.3), Brain - Hypothalamus (5.1), Brain - Amygdala (5.0), and Brain - Caudate (basal ganglia) (4.6).

SOURCE GeneReport for Unigene cluster for D21S2088E Gene Hs.145622

genes like me logo Genes that share expressions with D21S2088E: view

Orthologs for D21S2088E Gene

Evolution for D21S2088E Gene

ENSEMBL:
Gene Tree for D21S2088E (if available)
TreeFam:
Gene Tree for D21S2088E (if available)

No data available for Orthologs for D21S2088E Gene

Paralogs for D21S2088E Gene

No data available for Paralogs for D21S2088E Gene

Variants for D21S2088E Gene

Sequence variations from dbSNP and Humsavar for D21S2088E Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
rs172074 -- 23,372,063(-) ctgtt(C/T)tgaag intron-variant
rs189923 -- 23,382,326(-) ttagt(A/G)atttt intron-variant
rs200683 -- 23,365,111(+) GTAGC(A/G)GGTAC intron-variant
rs200684 -- 23,365,198(+) ATCGC(A/G)CCACT intron-variant
rs200685 -- 23,365,298(+) CTTGA(C/T)CTCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for D21S2088E Gene

Variant ID Type Subtype PubMed ID
nsv913609 CNV Loss 21882294
nsv913610 CNV Loss 21882294
nsv913611 CNV Gain 21882294
nsv511069 CNV Complex 20534489
esv2610584 CNV Deletion 19546169
esv2087595 CNV Deletion 18987734
esv2723270 CNV Deletion 23290073
esv2657049 CNV Deletion 23128226
esv1003564 CNV Deletion 20482838
nsv913612 CNV Gain 21882294

Relevant External Links for D21S2088E Gene

HapMap Linkage Disequilibrium report
D21S2088E

Disorders for D21S2088E Gene

No disorders were found for D21S2088E Gene.

No data available for UniProtKB/Swiss-Prot for D21S2088E Gene

Publications for D21S2088E Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A. … Antonarakis S.E. (Genomics 2002) 3

Products for D21S2088E Gene

Sources for D21S2088E Gene

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