Free for academic non-profit institutions. Other users need a Commercial license

Aliases for D21S2088E Gene

Subcategory (RNA class) for D21S2088E Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for D21S2088E Gene

  • D21S2088E 3

External Ids for D21S2088E Gene

Previous GeneCards Identifiers for D21S2088E Gene

  • GC00U902726
  • GC21U900453
  • GC21M024734

Summaries for D21S2088E Gene

GeneCards Summary for D21S2088E Gene

D21S2088E (D21S2088E) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for D21S2088E Gene

Genomics for D21S2088E Gene

Regulatory Elements for D21S2088E Gene

Enhancers for D21S2088E Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around D21S2088E on UCSC Golden Path with GeneCards custom track

Genomic Location for D21S2088E Gene

Chromosome:
21
Start:
23,361,104 bp from pter
End:
23,384,861 bp from pter
Size:
23,758 bases
Orientation:
Minus strand

Genomic View for D21S2088E Gene

Genes around D21S2088E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
D21S2088E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for D21S2088E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for D21S2088E Gene

Proteins for D21S2088E Gene

Post-translational modifications for D21S2088E Gene

No Post-translational modifications

No data available for DME Specific Peptides for D21S2088E Gene

Domains & Families for D21S2088E Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for D21S2088E Gene

Function for D21S2088E Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for D21S2088E Gene

Localization for D21S2088E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for D21S2088E Gene

Pathways & Interactions for D21S2088E Gene

SuperPathways for D21S2088E Gene

No Data Available

Interacting Proteins for D21S2088E Gene

Gene Ontology (GO) - Biological Process for D21S2088E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for D21S2088E Gene

Drugs & Compounds for D21S2088E Gene

No Compound Related Data Available

Transcripts for D21S2088E Gene

mRNA/cDNA for D21S2088E Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for D21S2088E Gene

D21S2088E:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for D21S2088E Gene

No ASD Table

Relevant External Links for D21S2088E Gene

GeneLoc Exon Structure for
D21S2088E

Expression for D21S2088E Gene

mRNA expression in normal human tissues for D21S2088E Gene

mRNA differential expression in normal tissues according to GTEx for D21S2088E Gene

This gene is overexpressed in Brain - Substantia nigra (x6.0), Brain - Spinal cord (cervical c-1) (x5.8), Brain - Hippocampus (x5.3), Brain - Hypothalamus (x5.1), Brain - Amygdala (x5.0), and Brain - Caudate (basal ganglia) (x4.6).

SOURCE GeneReport for Unigene cluster for D21S2088E Gene Hs.145622

genes like me logo Genes that share expression patterns with D21S2088E: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for D21S2088E Gene

Orthologs for D21S2088E Gene

Evolution for D21S2088E Gene

ENSEMBL:
Gene Tree for D21S2088E (if available)
TreeFam:
Gene Tree for D21S2088E (if available)

No data available for Orthologs for D21S2088E Gene

Paralogs for D21S2088E Gene

No data available for Paralogs for D21S2088E Gene

Variants for D21S2088E Gene

Sequence variations from dbSNP and Humsavar for D21S2088E Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1604883 -- 23,381,520(-) TTATA(C/G)AGGTG intron-variant
rs1818188 -- 23,377,293(-) cctcc(A/G)tgccA intron-variant
rs8129792 -- 23,384,585(+) TTGTT(C/G)CATAA intron-variant
rs189923 -- 23,382,326(-) ttagt(A/G)atttt intron-variant
rs10084575 -- 23,385,190(+) tttaa(A/G)gtcag upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for D21S2088E Gene

Variant ID Type Subtype PubMed ID
nsv913609 CNV Loss 21882294
nsv913610 CNV Loss 21882294
nsv913611 CNV Gain 21882294
nsv511069 CNV Complex 20534489
esv2610584 CNV Deletion 19546169
esv2087595 CNV Deletion 18987734
esv2723270 CNV Deletion 23290073
esv2657049 CNV Deletion 23128226
esv1003564 CNV Deletion 20482838
nsv913612 CNV Gain 21882294

Relevant External Links for D21S2088E Gene

HapMap Linkage Disequilibrium report
D21S2088E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for D21S2088E Gene

Disorders for D21S2088E Gene

No disorders were found for D21S2088E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for D21S2088E Gene

Publications for D21S2088E Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A. … Antonarakis S.E. (Genomics 2002) 3 67

Products for D21S2088E Gene

Sources for D21S2088E Gene

Content