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CCR6 Gene

protein-coding   GIFtS: 60

GC06P167383
chemokine (C-C motif) receptor 6
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: STRL22)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
BN-1 1, 2
CC-CKR-6 3
CCR-6 3
CD196 1, 2
CKR-L3 1, 2, 3
CKR6 2
CKRL3 2, 3, 5
CMKBR6 1, 2, 3, 5
DCR2 1, 2
DRY-6 1, 2
DRY6 3
GPR-CY4 1, 2, 3
GPR29 1, 2, 3, 5
GPRCY4 2, 3, 5
OTTHUMP00000017618 2
OTTHUMP00000017619 2
STRL22 2, 3
Descriptions
C-C CKR-6 3
CD196 antigen 3
Chemokine receptor-like 3 2, 3
G protein-coupled receptor 29 2
G-protein coupled receptor 29 3
LARC receptor 3
chemokine (C-C motif) receptor 6 2
chemokine (C-C) receptor 6 2
seven-transmembrane receptor, lymphocyte, 22 2
External Ids
HGNC: 16071
Entrez Gene: 12352
UniProtKB: P516843
Ensembl: ENSG000001124867
Search outside databases for aliases for CCR6 gene

Previous GC identifers: GC06P166889 GC06P167409 GC06P167445

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for CCR6:
This gene encodes a member of the beta chemokine receptor family, which is predicted to be a seven
transmembrane protein similar to G protein-coupled receptors. The gene is preferentially expressed
by immature dendritic cells and memory T cells. The ligand of this receptor is macrophage
inflammatory protein 3 alpha (MIP-3 alpha). This receptor has been shown to be important for
B-lineage maturation and antigen-driven B-cell differentiation, and it may regulate the migration
and recruitment of dentritic and T cells during inflammatory and immunological responses.
Alternatively spliced transcript variants that encode the same protein have been described for
this gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: CCR6_HUMAN, P51684
Function: Receptor for a C-C type chemokine. Binds to MIP-3-alpha/LARC and subsequently transduces
a signal by increasing the intracellular calcium ions level

Gene Wiki entry for CCR6 (C-C_chemokine_receptor_type_6)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CCR6 gene  

Entrez Gene cytogenetic band: 6q27   Ensembl cytogenetic band:  6q27   HGNC cytogenetic band: 6q27

CCR6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P167383:     (about GC identifiers)

Start:
167,332,883 bp from pter
End:
167,472,619 bp from pter
Size:
139,737 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000006.10  NT_007422.13  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: CCR6_HUMAN, P51684 (See protein sequence)
Recommended Name: C-C chemokine receptor type 6  
Size: 374 amino acids; 42494 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Caution: It is uncertain whether Met-1 or Met-6 is the initiator
Secondary accessions: P78553 Q92846

REFSEQ proteins (2 alternative transcripts): 
NP_004358.2  NP_113597.2  


ENSEMBL proteins: 
ENSP00000283506 ENSP00000383715 ENSP00000343952 ENSP00000339393 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Millipore Purified and/or Recombinant CCR6 Protein
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (CCR6)
Browse Abnova for Human Recombinant Proteins
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005886 plasma membrane TAS9186513
GO:0005887 integral to plasma membrane TAS9186513
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Antibodies for CCR6: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of CCR6
Sigma-Aldrich Antibodies for CCR6
R&D Systems Antibodies for CCR6
Antibodies from Abcam (CCR6), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (CCR6)
Novus Biologicals Antibodies for CCR6

Assays for CCR6: 
Invitrogen Assays for CCR6
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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4 InterPro domains/families:
 IPR004067 CC_6_rcpt
 IPR017452 GPCR_Rhodpsn_supfam
 IPR000276 7TM_GPCR_Rhodpsn
 IPR000355 Chmkine_rcpt


   GeneDecks  CCR6 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P51684

ProtoNet protein and cluster: P51684

2 Blocks protein families:
IPB000355 Chemokine receptor signature
IPB004067 C-C chemokine receptor type 6 signature


UniProtKB/Swiss-Prot: CCR6_HUMAN, P51684
Similarity: Belongs to the G-protein coupled receptor 1 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (CCR6)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (CCR6)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_004367

              Applied Biosystems Silencer® siRNAs for CCR6

              Sigma-Aldrich siRNA and siRNA Panels for CCR6  
                     Sigma-Aldrich shRNA Panels and shRNA for CCR6  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for CCR6
Millipore Clones for the Expression of CCR6
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_004367
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_004367
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_004367 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_004367

UniProtKB/Swiss-Prot: CCR6_HUMAN, P51684
Function: Receptor for a C-C type chemokine. Binds to MIP-3-alpha/LARC and subsequently transduces
a signal by increasing the intracellular calcium ions level
Induction: By interleukin-2

Genatlas biochemistry entry for CCR6:
chemokine CC beta receptor,expressed in lymphocyte and monocyte,highly homolog to
EBI1,IL8RA,IL8RB,G protein coupled receptor superfamily

3 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Ccr6):

hematopoietic systemimmune systemnormal

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004872 receptor activity TAS9186513
GO:0004930 G-protein coupled receptor activity IEA--
GO:0005515 protein binding IEA--
GO:0016493 C-C chemokine receptor activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Millipore Pathway for CCR6
 Neuropeptides signaling through G-protein alpha-i & G-protein alpha-q

   GeneDecks  CCR6 for the pathways selected above  
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1 Kegg Pathway  (Kegg details for CCR6):
 hsa04060 Cytokine-cytokine receptor interaction

   GeneDecks  CCR6 for the pathways selected above  
About GeneDecksing
 Gene Network CentralTM Interacting Genes and Proteins Network for  CCR6 

5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0006928 cell motion TAS9186513
GO:0006935 chemotaxis TAS11001880
GO:0006959 humoral immune response TAS11001880
GO:0006968 cellular defense response TAS10521347
GO:0007165 signal transduction TAS9186513
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Compounds for CCR6 available from Tocris Bioscience
6 Novoseek chemical compound relationships for CCR6 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
larc 90.90 20 9169459 (4), 11120783 (3), 11035086 (1), 9365118 (1) (see all 11)
mip-3alpha 89.26 4 18490742 (1), 17617631 (1)
rantes 66.22 6 10679062 (2), 17133532 (1), 11994442 (1), 9169459 (1)
tarc 45.98 2 9365118 (1), 9169459 (1)
ccl4 29.46 1 17133532 (1)
calcium 13.19 4 9886385 (2), 10577517 (1), 16365449 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (CCR6)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (CCR6)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_004367

              Sigma-Aldrich siRNA and siRNA Panels for CCR6  
                     Sigma-Aldrich shRNA Panels and shRNA for CCR6  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_004367  NM_031409  

REFSEQ mRNAs for CCR6 gene (2 alternative transcripts): 

NM_004367.5   NM_031409.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_004367  NM_031409  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_004367
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_004367
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_004367 

Additional cDNA sequence: 

AK223494.1 AK293015.1 AY242126.1 BC037960.1 U60000.1 U68030.1 U68031.1 

5 DOTS entries:

DT.121386105  DT.100749397  DT.95359744  DT.121386128  DT.432235 

24/78 AceView cDNA sequences (see all 78 ):

AI566733 BM874378 AY242126 NM_031409 BU193028 BC037960 AA720658 AA292126 
BG289619 NM_004367 BE550052 U68031 BU625682 BP337163 AA865712 BQ427775 
AW575605 CD558603 CB306621 AW404691 AW160364 BQ082444 BF942057 U60000 

highest scoring ESTs for CCR6:

U68030 AW404691 AW575605 BC037960 BX279700 N57964 U60000 AI808029 AK223494 AU098961 

Unigene Cluster for CCR6:

Chemokine (C-C motif) receptor 6
Hs.46468  [show with all ESTs]
Unigene Representative Sequence: NM_031409


GeneLoc Exon Structure

4 Ensembl transcripts including schematic representations:
ENST00000283506  ENST00000400926  ENST00000341935  ENST00000349984  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

CCR6 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for CCR6

1 / 2 / 3

4 probe-sets matching CCR6 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

33553_r_at2, 3 U95-A 1 1.00 1.00 0.86 1.35 U45984 0.20 1.00 0.72 1

458_at2, 3 U95-A 1 1.00 1.00 0.88 0.98 U68030 1.00 1.00 1.00 1

206983_at2, 3 U133-A 1 1.00 1.00 -- -- NM_004367 0.60 1.00 0.82 1

206983_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: GAAAATGTGG

SOURCE GeneReport for Unigene cluster: Hs.46468

Expression variation in blood from EXPOLDB for CCR6

UniProtKB/Swiss-Prot: CCR6_HUMAN, P51684
Tissue specificity: Spleen, lymph nodes, appendix, and fetal liver. Expressed in lymphocytes,
T-cells and B-cells but not in natural killer cells, monocytes or granulocytes

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for CCR6 gene from 5/7 species (see all 7 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
CCR61   -- chemokine (C-C motif) receptor 6 78.16(n)
80.75(a)
484080  XM_541197.2  XP_541197.2 
cow
(Bos taurus)
CCR61   -- chemokine (C-C motif) receptor 6 77.15(n)
79.67(a)
519716  XM_597941.2  XP_597941.2 
rat
(Rattus norvegicus)
Ccr61   -- chemokine (C-C motif) receptor 6 76.07(n)
76.44(a)
308163  NM_001013145.1  NP_001013163.1 
mouse
(Mus musculus)
Ccr61, 5 175
chemokine (C-C motif) receptor 61, 5 75.32(n)1
75.41(a)1
124581  NM_009835.31  NP_033965.11 
 AB0093695  AB0160315  (see all 12)
chicken
(Gallus gallus)
CCR61   -- chemokine (C-C motif) receptor 6 63.7(n)
60.06(a)
769278  XM_001232062.1  XP_001232063.1 
About this table        Species with no ortholog for CCR6

ENSEMBL Gene Tree for CCR6
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for CCR6 gene
CCR72  CCR92  CCR102  CXCR62  CCRL12  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/297 NCBI SNPs in CCR6 are shown (see all 297 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 117)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 6 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
--
rs20210331,2
A,C,F,H,O167444229(-) GGATAC/TGGCAG 1 -- ng5116Minor allele frequency- T:0.48EU EA WA NA 1472
--
rs20233051,2
A,C,F,H,O167444888(-) ATAAAG/AGAGAA 1 -- ng51 trp311Minor allele frequency- A:0.39MN EU EA WA NA 1174
--
rs10126571,2
A,C,F,H,O167445132(-) TTTCTT/GTGTTT 1 -- ng5110Minor allele frequency- G:0.44MN EU EA WA NA 1098
rs30930081,2
A,C,F,H167469526(+) CCTCTA/GCTTTC 2 -- ut51 ese38Minor allele frequency- G:0.10NA EU EA WA 600
--
rs10126561,2
A,C,F,H167445293(-) TTCACC/GCATAC 1 -- ut517Minor allele frequency- G:0.39MN EU EA WA 956
rs30930231,2
A,C,F,H167454280(+) GAACAG/ATGTGA 2 -- int1 ng518Minor allele frequency- A:0.31NA EU EA WA 600
--
rs69076661,2
A,C,F,H167443385(+) ctgccG/Aatgca 1 -- ng518Minor allele frequency- A:0.43EU EA WA 836
--
rs15564131,2
C,F,H,O167444733(-) AACCTC/TGTAAT 1 -- ng5110Minor allele frequency- T:0.41MN EU EA WA NA 1100
--
rs93482231,2
A,C,F,H167444379(+) ATTctT/Cgggaa 1 -- ng518Minor allele frequency- C:0.06EU EA WA 836
--
rs93660941,2
A,C,F167472390(+) TGACAA/GAGCGA 2 -- ut31 ese31Minor allele frequency- G:0.25NA 40
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HapMap Linkage Disequilibrium images for CCR6 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 601835

10/27 Novoseek disease relationships for CCR6 gene (see all 27 )

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
b-all 40.23 1 11368435 (1)
necrosis 39.44 1 11090084 (1)
inflammation 35.72 5 16215992 (2), 17379855 (1), 17178254 (1)
rheumatoid arthritis 34.32 3 12695561 (2), 16207316 (1)
psoriasis 32.17 6 15315355 (3), 10843722 (1), 15550147 (1)
skin lesion 27.85 1 15315355 (1)
tumors 24.95 16 18465142 (4), 16622267 (3), 15334073 (1), 19340288 (1) (see all 9)
lymphoma 24.37 3 12514792 (2), 11368435 (1)
lymphoproliferative disorders 23.11 3 12614207 (1), 15621766 (1), 11368435 (1)
liver metastases 21.96 7 16622267 (3), 16641550 (2), 12791091 (1)
About this table

Human Genome Epidemiology Navigator: CCR6 (2 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/201 PubMed articles for CCR6 gene (see all 201 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 1235 HGNC: 1607 AceView: CCR6 Ensembl:ENSG00000112486 euGenes: HUgn1235
ECgene: CCR6 H-InvDB: CCR6
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
Wikipedia http://en.wikipedia.org/wiki/CC_chemokine_receptors
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for CCR6:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for CCR6-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for CCR6 Antibodies for CCR6
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for CCR6 Browse small molecules at Sigma-Aldrich
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 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for CCR6

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