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Aliases for CYTOR Gene

Subcategory (RNA class) for CYTOR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CYTOR Gene

  • Cytoskeleton Regulator RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 152 2 3
  • Chromosome 2 Open Reading Frame 59 2
  • Non-Protein Coding RNA 152 2
  • NCRNA00152 3
  • LINC00152 3
  • C2orf59 3

External Ids for CYTOR Gene

Previous HGNC Symbols for CYTOR Gene

  • C2orf59
  • NCRNA00152
  • LINC00152

Summaries for CYTOR Gene

GeneCards Summary for CYTOR Gene

CYTOR (Cytoskeleton Regulator RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYTOR Gene

Genomics for CYTOR Gene

Regulatory Elements for CYTOR Gene

Enhancers for CYTOR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G087504 1.4 Ensembl ENCODE dbSUPER 15.3 +57.8 57751 17.4 PKNOX1 ATF1 FOXA2 ARNT YY1 TCF12 KLF13 CAVIN1 NCOA1 REST CYTOR LOC730268 GC02M087530 LOC101928152
GH02G087482 1.6 FANTOM5 Ensembl ENCODE dbSUPER 7.9 +30.1 30133 5.8 BCOR HDAC1 PKNOX1 KLF1 ZSCAN4 NFXL1 ZNF121 ZFHX2 GATA3 EGR1 CYTOR LOC730268 LOC101928152 LINC01943
GH02G087533 0.7 Ensembl dbSUPER 11.8 +78.7 78734 2.6 PKNOX1 IKZF1 CYTOR GC02M087530 GC02M087565
GH02G087468 1.2 Ensembl ENCODE dbSUPER 6 +14.7 14733 3.4 CTCF L3MBTL2 BHLHE40 MNT EBF1 DPF2 ZIC2 ZNF121 ZFHX2 ZNF692 CYTOR LINC01943 LOC101928152
GH02G087536 0.7 Ensembl dbSUPER 9.3 +83.6 83633 5.6 ZNF512 NBN ZNF592 CYTOR GC02M087530 GC02M087565
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CYTOR on UCSC Golden Path with GeneCards custom track

Promoters for CYTOR Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000119846 932 1801 HDAC1 ATF1 FOXA2 NFRKB ARID4B ZNF76 SIN3A FEZF1 ZNF366 SCRT2

Genomic Location for CYTOR Gene

Chromosome:
2
Start:
87,455,368 bp from pter
End:
87,606,805 bp from pter
Size:
151,438 bases
Orientation:
Plus strand

Genomic View for CYTOR Gene

Genes around CYTOR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYTOR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYTOR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYTOR Gene

Proteins for CYTOR Gene

Post-translational modifications for CYTOR Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYTOR Gene

Domains & Families for CYTOR Gene

Gene Families for CYTOR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CYTOR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYTOR Gene

Function for CYTOR Gene

Phenotypes for CYTOR Gene

GenomeRNAi human phenotypes for CYTOR:
genes like me logo Genes that share phenotypes with CYTOR: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYTOR Gene

Localization for CYTOR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CYTOR Gene

Pathways & Interactions for CYTOR Gene

SuperPathways for CYTOR Gene

No Data Available

Interacting Proteins for CYTOR Gene

Gene Ontology (GO) - Biological Process for CYTOR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYTOR Gene

Drugs & Compounds for CYTOR Gene

No Compound Related Data Available

Transcripts for CYTOR Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYTOR Gene

No ASD Table

Relevant External Links for CYTOR Gene

GeneLoc Exon Structure for
CYTOR
ECgene alternative splicing isoforms for
CYTOR

Expression for CYTOR Gene

NURSA nuclear receptor signaling pathways regulating expression of CYTOR Gene:

CYTOR
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYTOR Gene

Orthologs for CYTOR Gene

Evolution for CYTOR Gene

ENSEMBL:
Gene Tree for CYTOR (if available)
TreeFam:
Gene Tree for CYTOR (if available)

No data available for Orthologs for CYTOR Gene

Paralogs for CYTOR Gene

No data available for Paralogs for CYTOR Gene

Variants for CYTOR Gene

Sequence variations from dbSNP and Humsavar for CYTOR Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000038248 -- 87,470,414(+) AAAAG(A/T)AAAAA intron-variant
rs1000070828 -- 87,470,656(+) CGTCT(C/T)TCCAA intron-variant
rs1000075244 -- 87,477,855(+) GGCTC(C/T)ATACC intron-variant, nc-transcript-variant
rs1000123901 -- 87,476,211(+) CACAA(A/G)TTTGC intron-variant
rs1000291165 -- 87,518,613(+) CCTAC(A/C)TGGCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CYTOR Gene

Variant ID Type Subtype PubMed ID
dgv33n64 CNV gain 17921354
dgv3887n100 CNV gain 25217958
dgv3888n100 CNV gain 25217958
dgv3889n100 CNV loss 25217958
dgv3891n100 CNV gain 25217958
dgv3892n100 CNV gain+loss 25217958
dgv3893n100 CNV gain 25217958
dgv3899n100 CNV loss 25217958
dgv3900n100 CNV gain 25217958
dgv3901n100 CNV gain+loss 25217958
dgv3903n100 CNV gain 25217958
dgv3904n100 CNV gain 25217958
dgv3905n100 CNV loss 25217958
dgv3906n100 CNV gain+loss 25217958
dgv3907n100 CNV gain 25217958
dgv3908n100 CNV gain 25217958
dgv3909n100 CNV loss 25217958
dgv3910n100 CNV gain 25217958
dgv3911n100 CNV gain+loss 25217958
dgv3912n100 CNV loss 25217958
dgv61n16 CNV deletion 17901297
dgv717e214 CNV gain 21293372
esv26476 CNV gain+loss 19812545
esv2759073 CNV gain+loss 17122850
esv2760646 CNV gain+loss 21179565
esv2763649 CNV gain+loss 21179565
esv33317 CNV gain 17666407
esv3591571 CNV loss 21293372
esv3892882 CNV gain 25118596
esv3892893 CNV gain 25118596
nsv1000885 CNV gain 25217958
nsv1001093 CNV gain 25217958
nsv1002910 CNV loss 25217958
nsv1003669 CNV loss 25217958
nsv1004454 CNV loss 25217958
nsv1004578 CNV loss 25217958
nsv10068 CNV gain+loss 18304495
nsv1008658 CNV loss 25217958
nsv1008957 CNV gain 25217958
nsv1011919 CNV loss 25217958
nsv1072005 CNV deletion 25765185
nsv1130752 CNV deletion 24896259
nsv1148611 CNV deletion 26484159
nsv1160815 CNV deletion 26073780
nsv1160816 CNV deletion 26073780
nsv2819 CNV deletion 18451855
nsv2820 CNV deletion 18451855
nsv428398 CNV loss 18775914
nsv442790 CNV loss 18776908
nsv514991 CNV gain 21397061
nsv516958 CNV gain+loss 19592680
nsv519198 CNV loss 19592680
nsv582374 CNV gain 21841781
nsv582375 CNV loss 21841781
nsv582378 CNV loss 21841781
nsv582379 CNV loss 21841781
nsv818068 CNV gain 17921354
nsv821626 CNV gain 15273396
nsv829491 CNV gain 20364138
nsv834284 CNV gain+loss 17160897
nsv834285 CNV gain 17160897
nsv955225 CNV deletion 24416366
nsv961432 CNV duplication 23825009

Relevant External Links for CYTOR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYTOR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CYTOR Gene

Disorders for CYTOR Gene

Relevant External Links for CYTOR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CYTOR

No disorders were found for CYTOR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYTOR Gene

Publications for CYTOR Gene

  1. Portraying breast cancers with long noncoding RNAs. (PMID: 27617288) Van Grembergen O. … Fuks F. (Sci Adv 2016) 2 3 64
  2. Long non-coding RNA Linc00152 is involved in cell cycle arrest, apoptosis, epithelial to mesenchymal transition, cell migration and invasion in gastric cancer. (PMID: 26237576) Zhao J. … Huang G. (Cell Cycle 2015) 2 3 64
  3. Increased expression of long intergenic non-coding RNA LINC00152 in gastric cancer and its clinical significance. (PMID: 24523021) Pang Q. … Guo J. (Tumour Biol. 2014) 2 3 64
  4. Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response. (PMID: 24036268) Tani H. … Torimura M. (Biochem. Biophys. Res. Commun. 2013) 2 3 64
  5. Human gingiva transcriptome during wound healing. (PMID: 28005267) Wang Y. … Tatakis D.N. (J. Clin. Periodontol. 2017) 3 64

Products for CYTOR Gene

Sources for CYTOR Gene

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