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Aliases for CYSRT1 Gene

Aliases for CYSRT1 Gene

  • Cysteine-Rich Tail Protein 1 2 3
  • C9orf169 3 4
  • Similar To RIKEN CDNA 2310002J15 Gene 2
  • Chromosome 9 Open Reading Frame 169 2
  • UPF0574 Protein C9orf169 3

External Ids for CYSRT1 Gene

Previous HGNC Symbols for CYSRT1 Gene

  • C9orf169

Summaries for CYSRT1 Gene

GeneCards Summary for CYSRT1 Gene

CYSRT1 (Cysteine-Rich Tail Protein 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYSRT1 Gene

Genomics for CYSRT1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CYSRT1 Gene

Chromosome:
9
Start:
137,224,635 bp from pter
End:
137,226,311 bp from pter
Size:
1,677 bases
Orientation:
Plus strand

Genomic View for CYSRT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CYSRT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYSRT1 Gene

No data available for Regulatory Elements for CYSRT1 Gene

Proteins for CYSRT1 Gene

  • Protein details for CYSRT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MQ03-CRTP1_HUMAN
    Recommended name:
    Cysteine-rich tail protein 1
    Protein Accession:
    A8MQ03
    Secondary Accessions:
    • Q86UY7

    Protein attributes for CYSRT1 Gene

    Size:
    144 amino acids
    Molecular mass:
    15313 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CYSRT1 Gene

Proteomics data for CYSRT1 Gene at MOPED

Post-translational modifications for CYSRT1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CYSRT1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CYSRT1 Gene

Domains & Families for CYSRT1 Gene

Protein Domains for CYSRT1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CYSRT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MQ03

UniProtKB/Swiss-Prot:

CRTP1_HUMAN :
  • Belongs to the CYSRT1 family.
Family:
  • Belongs to the CYSRT1 family.
genes like me logo Genes that share domains with CYSRT1: view

No data available for Gene Families for CYSRT1 Gene

Function for CYSRT1 Gene

Phenotypes for CYSRT1 Gene

GenomeRNAi human phenotypes for CYSRT1:
genes like me logo Genes that share phenotypes with CYSRT1: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CYSRT1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYSRT1 Gene

Localization for CYSRT1 Gene

Gene Ontology (GO) - Cellular Components for CYSRT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with CYSRT1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for CYSRT1 Gene

Pathways & Interactions for CYSRT1 Gene

SuperPathways for CYSRT1 Gene

No Data Available

Interacting Proteins for CYSRT1 Gene

Selected Interacting proteins: A8MQ03-CRTP1_HUMAN for CYSRT1 Gene via I2D

Symbol External ID(s) Details
CACNA1A

Gene Ontology (GO) - Biological Process for CYSRT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYSRT1 Gene

Drugs & Compounds for CYSRT1 Gene

No Compound Related Data Available

Transcripts for CYSRT1 Gene

mRNA/cDNA for CYSRT1 Gene

(1) REFSEQ mRNAs :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CYSRT1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYSRT1 Gene

No ASD Table

Relevant External Links for CYSRT1 Gene

GeneLoc Exon Structure for
CYSRT1
ECgene alternative splicing isoforms for
CYSRT1

Expression for CYSRT1 Gene

mRNA expression in normal human tissues for CYSRT1 Gene

Protein differential expression in normal tissues from HIPED for CYSRT1 Gene

This gene is overexpressed in Urine (41.1) and Cervix (21.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CYSRT1 Gene



genes like me logo Genes that share expression patterns with CYSRT1: view

Protein tissue co-expression partners for CYSRT1 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CYSRT1 Gene

Orthologs for CYSRT1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CYSRT1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C11H9orf169 35
  • 80.27 (n)
  • 72 (a)
C11H9orf169 36
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C9H9orf169 35
  • 81.29 (n)
  • 77.7 (a)
mouse
(Mus musculus)
Mammalia 2310002J15Rik 35
  • 76.26 (n)
  • 75.76 (a)
2310002J15Rik 16
2310002J15Rik 36
  • 77 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf169 35
  • 99.09 (n)
  • 97.83 (a)
C9orf169 36
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1560880 35
  • 76.74 (n)
  • 72.09 (a)
Species with no ortholog for CYSRT1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CYSRT1 Gene

ENSEMBL:
Gene Tree for CYSRT1 (if available)
TreeFam:
Gene Tree for CYSRT1 (if available)

Paralogs for CYSRT1 Gene

No data available for Paralogs for CYSRT1 Gene

Variants for CYSRT1 Gene

Sequence variations from dbSNP and Humsavar for CYSRT1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs73565707 -- 137,223,516(+) CATTC(A/G)GAGCT upstream-variant-2KB
rs111918064 -- 137,223,389(+) CGGCG(G/T)GCGCC upstream-variant-2KB
rs114791344 -- 137,223,416(+) CGCAG(A/G)CCCCG upstream-variant-2KB
rs138266369 -- 137,223,481(+) CCCCG(-/C)CCCCC upstream-variant-2KB
rs150314870 -- 137,223,380(+) TCACC(C/G)ACCCG upstream-variant-2KB

Variation tolerance for CYSRT1 Gene

Gene Damage Index Score: 1.29; 25.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CYSRT1 Gene

HapMap Linkage Disequilibrium report
CYSRT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CYSRT1 Gene

Disorders for CYSRT1 Gene

Relevant External Links for CYSRT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CYSRT1
genes like me logo Genes that share disorders with CYSRT1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYSRT1 Gene

Publications for CYSRT1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 67
  3. Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia. (PMID: 21078624) Kahle J.J. … Zoghbi H.Y. (Hum. Mol. Genet. 2011) 67
  4. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PMID: 19056867) Gonzales P.A. … Knepper M.A. (J. Am. Soc. Nephrol. 2009) 67
  5. Identification of host proteins required for HIV infection through a functional genomic screen. (PMID: 18187620) Brass A.L. … Elledge S.J. (Science 2008) 67

Products for CYSRT1 Gene

Sources for CYSRT1 Gene

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