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Aliases for CYS1 Gene

Aliases for CYS1 Gene

  • Cystin 1 2 3
  • Cilia-Associated Protein 3 4
  • Cystin-1 3

External Ids for CYS1 Gene

Previous GeneCards Identifiers for CYS1 Gene

  • GC00U991196
  • GC02U900796
  • GC02M010116
  • GC02M010196

Summaries for CYS1 Gene

GeneCards Summary for CYS1 Gene

CYS1 (Cystin 1) is a Protein Coding gene. Diseases associated with CYS1 include astereognosia and ureterocele.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYS1 Gene

Genomics for CYS1 Gene

Regulatory Elements for CYS1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CYS1 Gene

10,056,780 bp from pter
10,080,944 bp from pter
24,165 bases
Minus strand

Genomic View for CYS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CYS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYS1 Gene

Proteins for CYS1 Gene

  • Protein details for CYS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:

    Protein attributes for CYS1 Gene

    158 amino acids
    Molecular mass:
    16393 Da
    Quaternary structure:
    • Interacts (when myristoylated) with UNC119 and UNC119B; interaction is required for localization to cilium.

neXtProt entry for CYS1 Gene

Proteomics data for CYS1 Gene at MOPED

Post-translational modifications for CYS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CYS1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CYS1 Gene

Domains for CYS1 Gene

Protein Domains for CYS1 Gene


Suggested Antigen Peptide Sequences for CYS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CYS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CYS1 Gene

Function for CYS1 Gene

Gene Ontology (GO) - Molecular Function for CYS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 22085962
genes like me logo Genes that share ontologies with CYS1: view
genes like me logo Genes that share phenotypes with CYS1: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CYS1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CYS1 Gene

Localization for CYS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CYS1 Gene

Cell projection, cilium membrane; Lipid-anchor. Cytoplasm, cytoskeleton, cilium axoneme. Note=Expression is enriched in the ciliary axoneme. Localization to cilium is mediated via interaction with UNC119 and UNC119B, which bind to the myristoyl moiety of the N-terminus.

Subcellular locations from

Jensen Localization Image for CYS1 Gene COMPARTMENTS Subcellular localization image for CYS1 gene
Compartment Confidence
plasma membrane 5
nucleus 3
cytoskeleton 2
mitochondrion 2
cytosol 1
extracellular 1

Gene Ontology (GO) - Cellular Components for CYS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm --
GO:0005829 cytosol TAS --
GO:0005856 cytoskeleton --
GO:0005886 plasma membrane --
GO:0005929 cilium --
genes like me logo Genes that share ontologies with CYS1: view

Pathways for CYS1 Gene

SuperPathways for CYS1 Gene

No Data Available

Interacting Proteins for CYS1 Gene

Gene Ontology (GO) - Biological Process for CYS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001822 kidney development IEA --
GO:0006996 organelle organization TAS --
GO:0048839 inner ear development IEA --
genes like me logo Genes that share ontologies with CYS1: view

No data available for Pathways by source for CYS1 Gene

Transcripts for CYS1 Gene

mRNA/cDNA for CYS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CYS1 Gene

Cystin 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CYS1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYS1 Gene

No ASD Table

Relevant External Links for CYS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CYS1 Gene

mRNA expression in normal human tissues for CYS1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CYS1 Gene

This gene is overexpressed in Kidney - Cortex (15.9).

Protein differential expression in normal tissues for CYS1 Gene

This gene is overexpressed in Liver (62.6) and Pancreas (6.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CYS1 Gene

SOURCE GeneReport for Unigene cluster for CYS1 Gene Hs.27092

mRNA Expression by UniProt/SwissProt for CYS1 Gene

Tissue specificity: Expressed at high levels in the kidney and pancreas. Moderate expression seen in the skeletal muscle, liver and heart. A weak expression seen in the brain, lung, uterus, prostate, testis, small intestine and colon
genes like me logo Genes that share expressions with CYS1: view

Expression partners for CYS1 Gene

* - Elite partner

Primer Products

In Situ Assay Products

Orthologs for CYS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CYS1 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Cys1 35
  • 75.26 (n)
  • 60.16 (a)
Cys1 16
Cys1 36
  • 61 (a)
(Pan troglodytes)
Mammalia CYS1 35
  • 97.87 (n)
  • 95.74 (a)
CYS1 36
  • 96 (a)
(Rattus norvegicus)
Mammalia Cys1 35
  • 73.44 (n)
  • 58.59 (a)
Species with no ortholog for CYS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CYS1 Gene

Gene Tree for CYS1 (if available)
Gene Tree for CYS1 (if available)

Paralogs for CYS1 Gene

No data available for Paralogs for CYS1 Gene

Variants for CYS1 Gene

Sequence variations from dbSNP and Humsavar for CYS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs15380 -- 10,057,143(+) ACATG(A/T)TTAAA utr-variant-3-prime
rs1129018 -- 10,057,010(-) TAGGG(A/G)AAAAA utr-variant-3-prime
rs4072564 -- 10,075,848(+) GTTTA(C/T)AGGCA intron-variant
rs4072565 -- 10,075,882(+) ACCAC(C/T)TGCTA intron-variant
rs4233873 -- 10,069,791(+) TGTCA(A/G)TGTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CYS1 Gene

Variant ID Type Subtype PubMed ID
nsv828297 CNV Loss 20364138
nsv873633 CNV Loss 21882294
nsv828308 CNV Gain 20364138
esv996512 CNV Deletion 20482838

Relevant External Links for CYS1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CYS1 Gene

Disorders for CYS1 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for CYS1 Gene in MalaCards »

(4) Diseases for CYS1 Gene

(4) University of Copenhagen DISEASES for CYS1 Gene

genes like me logo Genes that share disorders with CYS1: view

No data available for OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships , Genatlas and External Links for CYS1 Gene

Publications for CYS1 Gene

  1. Cystin, a novel cilia-associated protein, is disrupted in the cpk mouse model of polycystic kidney disease. (PMID: 11854326) Hou X. … Guay-Woodford L.M. (J. Clin. Invest. 2002) 2 3 4
  2. Identification of the human CYS1 gene and candidate gene analysis in Boichis disease. (PMID: 12733055) Fliegauf M. … Omran H. (Pediatr. Nephrol. 2003) 2 3 4
  3. An ARL3-UNC119-RP2 GTPase cycle targets myristoylated NPHP3 to the primary cilium. (PMID: 22085962) Wright K.J. … Jackson P.K. (Genes Dev. 2011) 3 4
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  5. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3

Products for CYS1 Gene

Sources for CYS1 Gene

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