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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CYP4F2 Gene

protein-coding   GIFtS: 63
GCID: GC19M015988

cytochrome P450, family 4, subfamily F, polypeptide 2

(Previous names: cytochrome P450, subfamily IVF, polypeptide 2 )
 Explore 17 diseases affiliated with
CYP4F2 via our new
 Human Malady Compendium 
Biological research products
for CYP4F2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Cytochrome P450, Family 4, Subfamily F, Polypeptide 21 2     CPF22
Cytochrome P450, Subfamily IVF, Polypeptide 21 2     Leukotriene B4 Omega-Hydroxylase2
Cytochrome P450 4F22 3     Leukotriene-B(4) Omega-Hydroxylase 12
Cytochrome P450-LTB-Omega2 3     Leukotriene-B4 20-Monooxygenase2
Leukotriene-B(4) 20-Monooxygenase 12 3     EC 1.14.13.303
CYPIVF22 3     

External Ids:    HGNC: 26451   Entrez Gene: 85292   Ensembl: ENSG000001861157   OMIM: 6044265   UniProtKB: P783293   

Export aliases for CYP4F2 gene to outside databases

Previous GC identifers: GC19M016474 GC19M015725 GC19M015849 GC19M015560


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CYP4F2:
This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are
monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and
other lipids. This protein localizes to the endoplasmic reticulum. The enzyme starts the process of inactivating and
degrading leukotriene B4, a potent mediator of inflammation. This gene is part of a cluster of cytochrome P450 genes
on chromosome 19. Another member of this family, CYP4F11, is approximately 16 kb away. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: CP4F2_HUMAN, P78329
Function: Cytochromes P450 are a group of heme-thiolate monooxygenases. In liver microsomes, this enzyme is involved in
an NADPH-dependent electron transport pathway. It oxidizes a variety of structurally unrelated compounds, including
steroids, fatty acids, and xenobiotics

Gene Wiki entry for CYP4F2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011295.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CYP4F2 gene promoter:
         p53   HSF1 (long)   Pax-2   Pax-2a   GATA-2   YY1   RORalpha1   FOXO4   HOXA5   STAT3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCYP4F2 promoter sequence
   Search SABiosciences Chromatin IP Primers for CYP4F2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CYP4F2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.12   Ensembl cytogenetic band:  19p13.12   HGNC cytogenetic band: 19p13.12

CYP4F2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CYP4F2 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M015988:  view genomic region     (about GC identifiers)

Start:
15,988,834 bp from pter      End:
16,008,884 bp from pter
Size:
20,051 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CP4F2_HUMAN, P78329 (See protein sequence)
Recommended Name: Leukotriene-B(4) omega-hydroxylase 1  
Size: 520 amino acids; 59853 Da
Cofactor: Heme group (By similarity)
Subcellular location: Endoplasmic reticulum membrane; Peripheral membrane protein. Microsome membrane; Peripheral
membrane protein
Secondary accessions: A8K425 Q16677 Q6NWT4 Q6NWT6 Q9NNZ0 Q9UIU8

Explore the universe of human proteins at neXtProt for CYP4F2: NX_P78329

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P78329

  • CYP4F2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_001073.3  
    ENSEMBL proteins: 
     ENSP00000221700   ENSP00000464999   ENSP00000467846   ENSP00000467443   ENSP00000465514  
     ENSP00000011989  
    Reactome Protein details: P78329
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    Uscn Proteins for CYP4F2

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IDA10660572
    GO:0005789endoplasmic reticulum membrane TAS--
    GO:0005792microsome ----
    GO:0016324apical plasma membrane IDA10660572
    GO:0043231intracellular membrane-bounded organelle IDA--


    CYP4F2 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    CYP4F2 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR001128 Cyt_P450
     IPR017972 Cyt_P450_CS
     IPR002401 Cyt_P450_E_grp-I

    Graphical View of Domain Structure for InterPro Entry P78329

    ProtoNet protein and cluster: P78329

    1 Blocks protein family: IPB002402 Group II E-class P450 signature

    UniProtKB/Swiss-Prot: CP4F2_HUMAN, P78329
    Similarity: Belongs to the cytochrome P450 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: CP4F2_HUMAN, P78329
    Function: Cytochromes P450 are a group of heme-thiolate monooxygenases. In liver microsomes, this enzyme is involved in
    an NADPH-dependent electron transport pathway. It oxidizes a variety of structurally unrelated compounds, including
    steroids, fatty acids, and xenobiotics
    Catalytic activity: (6Z,8E,10E,14Z)-(5S,12R)-5,12-dihydroxyicosa-6,8,10,14-tetraenoate + NADPH + O(2) =
    (6Z,8E,10E,14Z)-(5S,12R)-5,12,20-trihydroxyicosa-6,8,10,14-tetraenoate + NADP(+) + H(2)O

         Genatlas biochemistry entry for CYP4F2:
    leukotriene B4 omega-hydroxylase,involved in the degradation of LTB4,a potent mediator of inflammation

    Enzyme Number (IUBMB): EC 1.14.13.301

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    Gene Ontology (GO): 5/13 molecular function terms (GO ID links to tree view) (see all 13):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004497monooxygenase activity ----
    GO:0005506iron ion binding IEA--
    GO:0005515protein binding IPI17474147
    GO:0008392arachidonic acid epoxygenase activity IDA--
    GO:0009055electron carrier activity IEA--


    CYP4F2 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/8 super-pathways (see all 8About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Arachidonic acid metabolism
    Arachidonic acid metabolism1.00
    HETE and HPETE biosynthesis and metabolism0.39
    Arachidonic acid metabolism0.42
    HETE and HPETE biosynthesis and metabolism0.39
    2Cytochrome P450 - arranged by substrate type
    Cytochrome P450 - arranged by substrate type1.00
    cytochrome P4500.73
    Phase 1 - Functionalization of compounds0.74
    3Metabolism
    Metabolism1.00
    Metabolism of lipids and lipoproteins0.34
    Metabolic pathways0.38
    4Biological oxidations
    Biological oxidations1.00
    metapathway biotransformation0.41
    5Eicosanoids
    Eicosanoids1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for CYP4F2
        HETE and HPETE biosynthesis and metabolism


    1 GeneGo (Thomson Reuters) Pathway for CYP4F2
        HETE and HPETE biosynthesis and metabolism

    3 BioSystems Pathways for CYP4F2 
        cytochrome P450
    metapathway biotransformation
    alpha-tocopherol degradation

    5/9        Reactome Pathways for CYP4F2 (see all 9)
        Cytochrome P450 - arranged by substrate type
    Eicosanoids
    Metabolism
    Arachidonic acid metabolism
    Synthesis of (16-20)-hydroxyeicosatetraenoic acids (HETE)


    2         Kegg Pathways  (Kegg details for CYP4F2):
        Arachidonic acid metabolism
    Metabolic pathways


    CYP4F2 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CYP4F2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/41 Interacting proteins for CYP4F2 (P783291, 3 ENSP000002217004) via UniProtKB, MINT, STRING, and/or I2D (see all 41)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NCK1P163331, 3, ENSP000002889864EBI-1752413,EBI-3448658 I2D: score=1 STRING: ENSP00000288986
    ABL1P005193, ENSP000003614234I2D: score=1 STRING: ENSP00000361423
    FYNP062413, ENSP000003576564I2D: score=1 STRING: ENSP00000357656
    SRCP129313, ENSP000003509414I2D: score=1 STRING: ENSP00000350941
    GRB2P629933, ENSP000003390074I2D: score=1 STRING: ENSP00000339007
    About this table

    Gene Ontology (GO): 5/19 biological process terms (GO ID links to tree view) (see all 19):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000038very long-chain fatty acid metabolic process IDA18433732
    GO:0001676long-chain fatty acid metabolic process IDA18433732
    GO:0003091renal water homeostasis IEP10660572
    GO:0003095pressure natriuresis IEP10660572
    GO:0006690icosanoid metabolic process TAS--


    CYP4F2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    CYP4F2 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for CYP4F2

    10/25 HMDB Compounds for CYP4F2 (see all 25)    About this table
    CompoundSynonyms CAS #PubMed Ids
    10,11-dihydro-20-dihydroxy-LTB410,11-dihydroxy-20-dihydroxy-LTB(,4) (see all 3)----
    10,11-dihydro-20-trihydroxy-leukotriene B4(5S,12R,20)-pentahydroxy-(6Z,8E,14Z)-eicosatrienoic acid anion (see all 3)----
    12(S)-Leukotriene B42-epi-LTB4 (see all 7)83709-73-3--
    12-Keto-tetrahydro-leukotriene B412-keto-10,11,14,15-tetrahydro-LTB4 (see all 3)----
    12-Oxo-20-hydroxy-leukotriene B412-keto-20-hydroxy-leukotriene B(,4) (see all 6)----
    12-Oxo-20-trihydroxy-leukotriene B412-oxo-20,20,20-trihydroxy-leukotriene B(,4) (see all 6)----
    12-oxo-20-dihydroxy-leukotriene B412-oxo-20,20-dihydroxy-leukotriene B(,4) (see all 7)----
    13'-Carboxy-gama-tocopherol2,7,8-trimethyl-2-(13'-carboxy-4',8',12'-trimethyltridecyl)-6-chromanol;2,7,8-trimethyl-2-(13'-carboxy-4',8',12'-trimethyltridecyl)-6-hydroxychroman ----
    13'-Hydroxy-gama-tocopherol13'-OH-tocopherol ----
    13'-Hydroxy-gama-tocotrienol13OHgamaTE ----
    5 Novoseek chemical compound relationships for CYP4F2 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    20-hydroxyeicosatetraenoic acid 89.6 23 9618440 (5), 18235092 (3), 18391101 (2), 10660572 (2) (see all 6)
    leukotriene b4 79.4 12 10492403 (2), 10833273 (1), 11056396 (1), 9875512 (1) (see all 7)
    arachidonic acid 69.1 18 9618440 (4), 10660572 (2), 11056396 (1), 15994032 (1) (see all 8)
    clofibrate 56 2 10492403 (1), 9875512 (1)
    retinoic acid 14.9 6 11162441 (2), 10860554 (1)

    3 PharmGKB related drug/compound annotations for CYP4F2 gene
    Drug/compound PharmGKB Annotation
    acenocoumarolCA  
    phenprocoumonCA  
    warfarinCA  
    About this table

    Search CenterWatch for drugs/clinical trials and news about CYP4F2 / CP4F2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    About This Section

    REFSEQ mRNAs for CYP4F2 gene: 
    NM_001082.3  

    Unigene Cluster for CYP4F2:

    Cytochrome P450, family 4, subfamily F, polypeptide 2
    Hs.558423  [show with all ESTs]
    Unigene Representative Sequence: U02388
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000221700(uc002nbs.1 uc010xot.1 uc010xou.1) ENST00000592328
    ENST00000392846 ENST00000589654 ENST00000592710 ENST00000587671 ENST00000586927
    ENST00000011989

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    Additional cDNA sequence: 

    AK290790.1 AK296200.1 AK300961.1 AK313705.1 BC067437.1 BC067438.1 BC067439.1 BC067440.1 
    D26480.1 U02388.2 

    4 DOTS entries:

    DT.101958587  DT.121496202  DT.452202  DT.95372012 

    24/61 AceView cDNA sequences (see all 61):

    BE552106 BC067439 CB157546 AV655184 AW118600 NM_001082 CB161237 AA377259 
    AI953391 CK032817 AI364951 CA444522 AW771881 CK130196 CB157046 CF271900 
    CB162371 BI763623 CF271895 CF271894 BC067437 BG054501 CK130195 AA244020 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for CYP4F2    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11
    SP1:                                                                                    
    SP2:                                                              -                     
    SP3:                                                                                    
    SP4:                                                                                    


    ECgene alternative splicing isoforms for CYP4F2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CYP4F2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See CYP4F2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CYP4F2

    SOURCE GeneReport for Unigene cluster: Hs.558423

    UniProtKB/Swiss-Prot: CP4F2_HUMAN, P78329
    Tissue specificity: Liver

        SABiosciences Expression via Pathway-Focused PCR Array including CYP4F2: 
              Drug Metabolism: Phase I Enzymes in human mouse rat

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CYP4F2 gene from 4/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    63(a)
    1 → many
    2(79936816-79963743)
    zebrafish
    (Danio rerio)
    Actinopterygii cyp4f31 cytochrome P450, family 4, subfamily F, polypeptide more 60.73(n)
    55.14(a)
      100037390  NM_001089541.1  NP_001083010.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons CYP735A26
    CYP72A146
    (see all 22)
    cytokinin trans-hydroxylase
    cytochrome P450, family 72, subfamily A, polypepti...
    (see all 22)
    21(a)
    20(a)
    (see all 22)
    possible ortholog
    possible ortholog
    (see all 22)
    1(25061731-25065446)
    3(4934420-4936563)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 42)
    cytochrome P450, putative, expressed
    (see all 42)
    26(a)
    25(a)
    (see all 42)
    possible ortholog
    possible ortholog
    (see all 42)
    12(909825-911396)
    1(23662015-23663400)


    ENSEMBL Gene Tree for CYP4F2 (if available)
    TreeFam Gene Tree for CYP4F2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CYP4F2 gene
    CYP4F222  CYP4F32  CYP4F112  CYP46A12  ENSG000002256072  CYP4B12  CYP3A52  CYP4X12  
    TBXAS12  CYP3A42  CYP3A432  CYP3A72  CYP4V22  CYP4A222  CYP4A112  CYP4F122  
    CYP4Z12  
    17 SIMAP similar genes for CYP4F2 using alignment to 7 protein entries:     CP4F2_HUMAN (see all proteins):
    DKFZp761K058    CYP4F3    CYP4F11    CYP4F8    CYP4F12    CYP4F22
    DKFZp686F1316    CYP4B1    CYP4A11    CYP4X1    CYP4Z1    CYP4Z2P
    CYP3A5    CYP4V2    CYP4A22    CYP2C9    CYP3A43/CYP3A4

    CYP4F2 for paralogs           About GeneDecksing


    5/7 Pseudogenes.org Pseudogenes for CYP4F2 (see all 7)
    PGOHUM00000235016 PGOHUM00000234188 PGOHUM00000234532 PGOHUM00000239026 PGOHUM00000240293


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/607 NCBI SNPs in CYP4F2 are shown (see all 607    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1406309771,2
    Cother15574473(+) GCATCC/TGACGG 2 Q R mis11Minor allele frequency- T:0.00NA 4552
    rs30932081,2
    C,F,H,--15559997(-) AACAGT/CTATGA 1 -- ds500114Minor allele frequency- C:0.08NS EA WA 1242
    rs30932061,2
    C,F--15560168(-) AATAAAA/-GTGTT 1 -- ds50012Minor allele frequency- -:0.21NS 88
    rs30932041,2
    C,F,--15560582(-) aacagG/Accaat 1 -- ut31 ese36Minor allele frequency- A:0.13NS WA CSA NA 336
    rs30932011,2
    C,F,H,--15560869(-) ataatT/Cgagac 1 -- ut312Minor allele frequency- C:0.05NS 92
    rs46465021,2
    C--15560924(-) TTACCC/ATAAGA 1 -- ut312Minor allele frequency- A:0.00NA 4
    rs30932271,2
    C,--15562935(-) AAGTGG/TTTCCT 1 -- int14Minor allele frequency- T:0.01NS NA 92
    rs1114250951,2
    C,--15563193(+) AATTTG/ATCCTG 1 -- int12Minor allele frequency- A:0.02NA 122
    rs30931921,2
    C,F,--15563734(-) TGTATC/TTCTGT 1 -- int16Minor allele frequency- T:0.08NS NA WA 214
    rs30931911,2
    C,--15564069(-) GCATAA/CGTTCC 1 -- int13Minor allele frequency- C:0.01NS WA 204

    HapMap Linkage Disequilibrium report for CYP4F2 (15988834 - 16008884 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for CYP4F2
         2 Indels: 45729 26199
    Human Gene Mutation Database (HGMD): CYP4F2

    Locus Specific Mutation Databases (LSDB): CYP4F2

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CYP4F2
    DNA2.0 Custom Variant and Variant Library Synthesis for CYP4F2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CYP4F2 for disorders           About GeneDecksing

    OMIM gene information: 604426    OMIM disorders: --

    17 diseases for CYP4F2:    About MalaCards
    warfarin sensitivity    essential hypertension    myocardial infarction    adrenoleukodystrophy
    cerebral infarction    ichthyosis    cholesterol    hepatoblastoma
    lung adenocarcinoma    hypertension    cerebritis    adenocarcinoma
    tuberculosis    hepatitis    venous thromboembolism    mycobacterium tuberculosis
    thromboembolism

    1 Novoseek disease relationship for CYP4F2 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    inflammation 0 3 10492403 (1), 18433732 (1), 16835590 (1)

    Human Genome Epidemiology (HuGE) Navigator: CYP4F2 (49 documents)

    Export disorders for CYP4F2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CYP4F2 gene, integrated from 9 sources (see all 96):
    (articles sorted by number of sources associating them with CYP4F2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning and expression of a novel form of leukotriene B4 omega- hydroxylase from human liver. (PubMed id 8026587)1, 2, 3 Kikuta Y....Kusunose M. (1994)
    2. Expression and molecular cloning of human liver leukotriene B4 omega- hydroxylase (CYP4F2) gene. (PubMed id 10492403)1, 2, 9 Kikuta Y.... Kusunose M. (1999)
    3. Promoter activity and regulation of the CYP4F2 leukotriene B4 omega hydroxylase gene by peroxisomal proliferators and retinoic acid in HepG2 cells. (PubMed id 10860554)1, 2, 9 Zhang X.... Hardwick J.P. (2000)
    4. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (2004)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. Identification of a new P450 subfamily, CYP4F1, expressed in rat hepatic tumors. (PubMed id 8424651)1, 3 Chen L. and Hardwick J.P. (1993)
    7. Regulation of human cytochrome P450 4F2 expression by sterol regulatory element-binding protein and lovastatin. (PubMed id 17142457)1, 9 Hsu M.H....Johnson E.F. (2007)
    8. CYP4F2 Is a vitamin K1 oxidase: An explanation for altered warfarin dose in carriers of the V433M variant. (PubMed id 19297519)1, 9 McDonald M.G....Rettie A.E. (2009)
    9. Metabolism of arachidonic acid to 20-hydroxy-5,8,11, 14-eicosatetraenoic acid by P450 enzymes in human liver: involvement of CYP4F2 and CYP4A11. (PubMed id 9618440)1, 9 Powell P.K....Lasker J.M. (1998)
    10. Association of a functional cytochrome P450 4F2 haplotype with urinary 20-HETE and hypertension. (PubMed id 18235092)1, 9 Liu H....Lu J. (2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 8529 HGNC: 2645 AceView: CYP4F2 Ensembl:ENSG00000186115 euGenes: HUgn8529
    ECgene: CYP4F2 Kegg: 8529 H-InvDB: CYP4F2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CYP4F2 Pharmacogenomics, SNPs, Pathways
    SeattleSNPshttp://pga.gs.washington.edu/data/cyp4f2/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CYP4F2 gene:
    Search GeneIP for patents involving CYP4F2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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