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Aliases & Descriptions for CYP4B1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions cytochrome P450, family 4, subfamily B, polypeptide 11 2 cytochrome P450 4B12 cytochrome P450, subfamily IVB, polypeptide 11 2 microsomal monooxygenase2 Cytochrome P450-HP2 3 P-450HP2 CYPIVB12 3 EC 1.14.14.13
Search outside databases for aliases for CYP4B1 genePrevious GC identifers: GC01P046958 GC01P046221 GC01P046651 GC01P046634 GC01P046976 GC01P047037
Summaries for CYP4B1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for CYP4B1 : This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This protein localizes to the endoplasmic reticulum. In rodents, the homologous protein has been shown to metabolize certain carcinogens; however, the specific function of the human protein has not been determined. Two transcript variants encoding slightly different isoforms have been found for this gene. (provided by RefSeq) UniProtKB/Swiss-Prot: CP4B1_HUMAN, P13584 Function : Cytochromes P450 are a group of heme-thiolate monooxygenases. In liver microsomes, this enzyme is involved inan NADPH-dependent electron transport pathway. It oxidizes a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics Gene Wiki entry for CYP4B1
Genomic Views for CYP4B1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
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UCSC and
Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
SABiosciences )About This Section
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CYP4B1 gene upstream (promoter) region :Egr-1 GATA-1 CHOP-10 C/EBPalpha POU3F2 (N-Oct-5a) POU3F2 (N-Oct-5b) POU3F2 MIF-1 USF1 MRF-2 Epigenetics: Search SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for CYP4B1 Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p34-p12 Ensembl cytogenetic band: 1p33 HGNC cytogenetic band: 1p34-p12 CYP4B1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P047264: view genomic region
(about GC identifiers )
Start:
47,264,670 bp from pter
End:
47,285,085 bp from pter
Size:
20,416 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.10 NT_032977.9 Proteins for CYP4B1 gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: CP4B1_HUMAN, P13584 (See
protein sequence )Recommended Name: Cytochrome P450 4B1 Size : 511 amino acids; 58991 Da
Cofactor : Heme group (By similarity)
Subcellular location : Endoplasmic reticulum membrane; Peripheral membrane protein. Microsome membrane; Peripheralmembrane protein
Secondary accessions : Q1HBI2 Q8TD85 Q8WWF2 Q8WWU9 Q8WWV0Alternative splicing : 2 isoforms : P13584-1 P13584-2
REFSEQ proteins (2 alternative transcripts):
NP_000770.2 NP_001093242.1 ENSEMBL proteins: ENSP00000271153 ENSP00000360991 ENSP00000360987 ENSP00000400413 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
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CYP4B1 for ontologies About GeneDecksing Antibodies for CYP4B1: Assays for CYP4B1:
Protein
Domains/ Families for CYP4B1 gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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CYP4B1 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P13584 ProtoNet protein and cluster: P13584
UniProtKB/Swiss-Prot: CP4B1_HUMAN, P13584 Similarity : Belongs to the cytochrome P450 family
Gene Function for CYP4B1 gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
Applied Biosystems ,
Sigma-Aldrich , Clones from
Millipore ,
Sigma-Aldrich ,
OriGene ,
Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: CP4B1_HUMAN, P13584 Function : Cytochromes P450 are a group of heme-thiolate monooxygenases. In liver microsomes, this enzyme is involved inan NADPH-dependent electron transport pathway. It oxidizes a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics Catalytic activity : RH + reduced flavoprotein + O(2) = ROH + oxidized flavoprotein + H(2)OInduction : P450 can be induced to high levels in liver and other tissues by various foreign compounds, including drugs,pesticides, and carcinogens Enzyme Number (IUBMB): EC 1.14.14.1
Genatlas biochemistry entry for CYP4B1 :cytochrome P450,subfamily IVB1,expressed in lung 5/9 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 9
):
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CYP4B1 for ontologies About GeneDecksing Animal Models: 2 MGI phenotypic alleles for Cyp4b1 (no phenotypes)
CYP4B1 for phenotypes About GeneDecksing Pathways & Interactions for CYP4B1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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CYP4B1 for pathways About GeneDecksing 5 Sigma-Aldrich "Your Favorite Gene" Pathways for CYP4B1 (Your Favorite Gene powered by Ingenuity) Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CYP4B1 5 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006725 cellular aromatic compound metabolic process
-- -- GO:0018879 biphenyl metabolic process
-- -- GO:0018917 fluorene metabolic process
-- -- GO:0042738 exogenous drug catabolic process
-- -- GO:0055114 oxidation reduction
IEA --
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CYP4B1 for ontologies About GeneDecksing
Drugs & Compounds for CYP4B1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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CYP4B1 for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for CYP4B1
Browse Tocris compounds for CYP4B1 10/38 Novoseek chemical compound relationships for CYP4B1 gene (see all 38
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
4-ipomeanol
43.83
14
8248926 (5), 9650611 (3), 7503758 (2), 10917203 (2) (see all 6 )
2-aminoanthracene
21.88
8
9650611 (4), 11857036 (2), 7503758 (1), 10917203 (1)
2-aminofluorene
13.11
6
8248926 (1), 7894498 (1), 18713828 (1), 12639503 (1) (see all 6 )
heme
11.86
12
11669629 (4), 9737862 (3), 12859977 (3), 17880109 (2)
3,3'-dichlorobenzidine
8.41
3
9310344 (3)
2-naphthylamine
7.18
3
9310344 (2), 18713828 (1)
lauric acid
5.56
3
9737862 (1), 12639503 (1), 11396967 (1)
toluene
4.31
4
9726784 (4)
3-methyleneindolenine
3.30
1
20187624 (1)
12-hydroxydodecanoic acid
3.18
1
9737862 (1)
About this table 1 PharmGKB drug compound relationship for CYP4B1 gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
xenobiotics GN  12142726
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Transcripts for CYP4B1 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Primers from
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SABiosciences , Expression Assays from Applied Biosystems )About This Section
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User Feedback Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_000779 NM_001099772 Clones: Origene GFP tagged cDNA clones in CMV expression vector (see all 2 ): CYP4B1 Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): CYP4B1 Origene untagged cDNA clones in CMV expression vector (see all 3 ): CYP4B1
Primers: Origene genome-wide validated SYBR primer pairs: CYP4B1 SABiosciences RT2 qPCR Primer Assay for CYP4B1: PPH01269A
REFSEQ mRNAs for CYP4B1 gene (2 alternative transcripts): NM_000779.3 NM_001099772.1
Additional cDNA sequence: AF491285.1 AK225576.1 AK225578.1 AK300921.1 AK300941.1 AK307715.1 AK313170.1 AY064484.1 AY064485.1 AY064486.1 AY151048.1 AY151049.1 BC017758.1 J02871.1 X16699.1
7 DOTS entries : DT.111100 DT.101980207 DT.100776898 DT.97826031 DT.97837690 DT.121455988 DT.97762269
24/96 AceView cDNA sequences (see all 96
):
BM977024 AY064485 CB306078 BU684574 CD171911 BQ881161 AF491285 BM980704 BQ029538 BM980737 BM982410 BQ045121 AY064486 AY151048 CD519012 BM975516 BM976673 BC017758 BQ029986 AY151049 AA036869 BM977596 CD013981 BF001158
highest scoring ESTs for CYP4B1 :J02871 AA036869 AA193653 AA291484 AA404692 AA411450 AA411581 AA477217 AA807949 AF491285 Unigene Cluster for CYP4B1:
Cytochrome P450, family 4, subfamily B, polypeptide 1 Hs.436317 [show with all ESTs ] Unigene Representative Sequence: NM_001099772 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for CYP4B1 (see all 6
) ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b · 13c SP1 :         -     -                             SP2 :         -     -         -                     SP3 :         -     -                             SP4 :         -   -   -                             SP5 :         -   -                              
About this scheme ECgene alternative splicing isoforms for CYP4B1 8 Ensembl transcripts including schematic representations : ENST00000271153
ENST00000371923
ENST00000371919
ENST00000497005
ENST00000468637
ENST00000481248
ENST00000464439
ENST00000452782
Expression for CYP4B1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback CYP4B1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CYP4B1 1 / 2 / 3
4 probe-sets matching CYP4B1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
1667_s_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
J02871
1.00
1.00
1.00
1
210096_at2 , 3
U133-A
1
0.91
1.00
--
--
J02871
1.00
1.00
1.00
1
1555497_a_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
210096_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
About this table
CYP4B1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTTATGGCTG SOURCE GeneReport for Unigene cluster: Hs.436317 Expression variation in blood from EXPOLDB for CYP4B1
UniProtKB/Swiss-Prot: CP4B1_HUMAN, P13584 Tissue specificity : Detected in the liver and lung (at protein level)
Primers: Origene genome-wide validated SYBR primer pairs: CYP4B1 SABiosciences RT2 qPCR Primer Assay for CYP4B1: PPH01269A
Orthologs for CYP4B1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CYP4B1 gene from 5/10 species (see all 10
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
LOC6084521
--
similar to cytochrome P450, family 4, subfamily B, more
87.28(n) 86.89(a)
608452 XM_845151.1 XP_850244.1
chimpanzee (Pan troglodytes)
LOC4565571
--
similar to Cytochrome P450, family 4, subfamily B, more
99.4(n) 98.71(a)
456557 XM_513140.2 XP_513140.2
cow (Bos taurus)
CYP4B11
--
cytochrome P450, family 4, subfamily B, polypeptide more
84.67(n) 82.78(a)
540149 NM_001076202.1 NP_001069670.1
rat (Rattus norvegicus)
Cyp4b11
--
cytochrome P450, family 4, subfamily b, polypeptide more
86.04(n) 85.91(a)
24307 NM_016999.2 NP_058695.2
mouse (Mus musculus)
Cyp4b1 5 Cyp4b11
4 (49.50 cM) 5
cytochrome P450, family 4, subfamily b, polypeptide more 1, 5
85.71(n) 1 85.13(a) 1
13120 1 NM_007823.2 1 NP_031849.1 1 AK078882 5 AK143890 5 (see all 9 )
About this table Species with no ortholog for CYP4B1 ENSEMBL Gene Tree for CYP4B1 Paralogs for CYP4B1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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User Feedback Paralogs for CYP4B1 gene CYP4F22 2 CYP4F11 2 CYP4F2 2 CYP4F3 2 CYP4F8 2 CYP46A1 2 LOC388514 2 CYP3A5 2 CYP4X1 2 TBXAS1 2 CYP3A43 2 CYP3A4 2 CYP3A7 2 CYP4V2 2 CYP4A22 2 CYP4A11 2 CYP4Z1 2 CYP4F12 2
CYP4B1 for paralogs About GeneDecksing
Genomic Variants for CYP4B1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CYP4B1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CYP4B1: --
Disorders & Mutations for CYP4B1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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CYP4B1 for disorders About GeneDecksing
OMIM: 124075 10/18 Novoseek disease relationships for CYP4B1 gene (see all 18
)
About this table Locus Specific Mutation Databases: CYP4B1 Human Gene Mutation Database : CYP4B1 Genetic Association Database: CYP4B1 Human Genome Epidemiology Navigator: CYP4B1 (7 documents)
Medical News for CYP4B1 gene (Possibly Related Articles in
Doctor's Guide )
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User Feedback --
Publications for CYP4B1 gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 21/56 PubMed articles for CYP4B1 gene (see all 56
): Genetic polymorphism of the human cytochrome P450 CYP4B1 : evidence for a non-functional allelic variant. (PubMed id 12142726) 3 , 4 , 6, 7 Lo-Guidice J.-M.... Broly F. (2002) Human CYP4B1 gene in the japanese population analyzed by denaturing HPLC. (PubMed id 15499177) 3 , 6 Hiratsuka M....Mizugaki M. (2004) cDNA cloning of cytochrome P-450 related to P-450p-2 from the cDNA library of human placenta. Gene structure and expression. (PubMed id 2298205) 3 , 4 Yokotani N.... Fujii-Kuriyama Y. (1990) Identification of a new P450 expressed in human lung: complete cDNA sequence, cDNA-directed expression, and chromosome mapping. (PubMed id 2574990) 3 , 4 Nhamburo P.T.... Kimura S. (1989) Possible relationship between the risk of Japanese bladder cancer cases and the CYP4B1 genotype. (PubMed id 18713828) 1, 3 Sasaki T....Hiratsuka M. (2008) CYP4B1 is a possible risk factor for bladder cancer in humans. (PubMed id 11062028) 1, 3 Imaoka S....Funae Y. (2000) Retinoic acid induces corneal epithelial CYP4B1 gene expression and stimulates the synthesis of inflammatory 12-hydroxyeicosanoids. (PubMed id 15006160) 1, 3 Ashkar S....Laniado-Schwartzman M. (2004) Covalent linkage of prosthetic heme to CYP4 family P450 enzymes. (PubMed id 11669629) 1, 3 Henne K.R....Rettie A.E. (2001) Detection of cytochrome P450-2A6, -3A5 and -4B1 with real-time polymerase chain reaction in prostate tissue. (PubMed id 19040121) 1, 3 Zencir S....Topcu Z. (2008) Characterization of pulmonary CYP4B2, specific catalyst of methyl oxidation of 3-methylindole. (PubMed id 12695542) 1, 4 Carr B.A....Yost G.S. (2003) Quantification of CYP2B7, CYP4B1 , and CYPOR messenger RNAs in normal human lung and lung tumors. (PubMed id 8313365) 1, 3 Czerwinski M....Gonzalez F.J. (1994) Species-specific expression of CYP4B1 in rabbit and human gastrointestinal tissues. (PubMed id 7894498) 1, 3 McKinnon R.A....McManus M.E. (1994) Mutagenic activation of urinary bladder carcinogens b y CYP4B1 and the presence of CYP4B1 in bladder mucosa. (PubMed id 09310344) 1 Imaoka S....Funae Y. (year=1997;month=Sep;day=15) A transgenic mouse expressing human CYP4B1 in the liver. (PubMed id 11396967) 1 Imaoka S....Funae Y. (2001) Localization of CYP4B1 in the rat nasal cavity and analysis of CYPs as secreted proteins. (PubMed id 16788951) 1 Genter M.B....Rettie A.E. (2006) Expression of cytochrome P450 enzymes CYP1A1, CYP1B1, CYP2E1 and CYP4B1 in cultured transitional cells from specimens of the human urinary tract and from urinary sediments. (PubMed id 16341845) 1 Roos P.H....Golka K. (2006) Genotyping and site-directed mutagenesis of a cytochrome P450 meander Pro-X-Arg motif critical to CYP4B1 catalysis. (PubMed id 12639503) 1 Zheng Y.M....Rettie A.E. (2003) Mechanism of formation of the ester linkage between heme and Glu310 of CYP4B1 : 18O protein labeling studies. (PubMed id 17880109) 1 Baer B.R....Rettie A.E. (2007) Rabbit CYP4B1 engineered for high-level expression in Escherichia coli: ligand stabilization and processing of the N-terminus and he me prosthetic group. (PubMed id 12859977) 1 Cheesman M.J....Rettie A.E. (year=2003;month=Aug;day=1) Molecular mechanisms regulating human CYP4B1 lung-selective expression. (PubMed id 15900016) 1 Poch M.T....Hines R.N. (2005) Identification of a meander region proline residue critical for heme binding to cytochrome P450: implications for the catalytic function of human CYP4B1 . (PubMed id 9737862) 1 Zheng Y.M....Rettie A.E. (1998)
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ATLAS Chromosomes in Cancer entry for CYP4B1 Genetics and Cytogenetics in Oncology and Haematology Cytochrome P450 Allele Nomenclature Committee http://www.cypalleles.ki.se/cyp4b1.htm NIEHS-SNPs http://egp.gs.washington.edu/data/cyp4b1/
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User Feedback Patent Information for CYP4B1 gene: Search GeneIP for patents involving CYP4B1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search Services for CYP4B1 gene (Reagents available from Applied Biosystems , Antibodies and assays by Cell
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