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CYP46A1 Gene

protein-coding   GIFtS: 57

GC14P099220
cytochrome P450, family 46, subfamily A, polypeptide 1
(Previous names: cytochrome P450, subfamily 46 (cholesterol 24-hydroxylase) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: CYP46)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CH24H 3
CP46 2
CYP46 2, 3, 5
EC 1.14.13.98 3
Descriptions
Cytochrome P450 46A1 3
cholesterol 24-hydroxylase 2
cytochrome P450, family 46 2
cytochrome P450, family 46, subfamily A, polypeptide 1 2
cytochrome P450, subfamily 46 (cholesterol 24-hydroxylase) 1, 2
External Ids
HGNC: 26411
Entrez Gene: 108582
UniProtKB: Q9Y6A23
Ensembl: ENSG000000365307
Search outside databases for aliases for CYP46A1 gene

Previous GC identifers: GC14P093966 GC14P098140

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for CYP46A1:
This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450
proteins are monooxygenases which catalyze many reactions involved in drug metabolism and
synthesis of cholesterol, steroids and other lipids. This endoplasmic reticulum protein is
expressed in the brain, where it converts cholesterol to 24S-hydroxycholesterol. While cholesterol
cannot pass the blood-brain barrier, 24S-hydroxycholesterol can be secreted in the brain into the
circulation to be returned to the liver for catabolism. [provided by RefSeq]

UniProtKB/Swiss-Prot: CP46A_HUMAN, Q9Y6A2
Function: Involved in the turnover of cholesterol. It converts cholesterol into
24S-hydroxycholesterol and, to a lesser extent, 25-hydroxycholesterol

Gene Wiki entry for CYP46A1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CYP46A1 gene  

Entrez Gene cytogenetic band: 14q32.1   Ensembl cytogenetic band:  14q32.2   HGNC cytogenetic band: 14q32.1

CYP46A1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P099220:     (about GC identifiers)

Start:
99,220,407 bp from pter
End:
99,263,391 bp from pter
Size:
42,985 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000014.7  NT_026437.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: CP46A_HUMAN, Q9Y6A2 (See protein sequence)
Recommended Name: Cholesterol 24-hydroxylase  
Size: 500 amino acids; 56821 Da
Cofactor: Heme group (By similarity)
Subcellular location: Endoplasmic reticulum membrane; Single-pass membrane protein. Microsome
membrane; Single-pass membrane protein
PDB structure from and Proteopedia :
2Q9F (3D)    2Q9G (3D)    

REFSEQ proteins: NP_006659.1  

ENSEMBL proteins: 
ENSP00000369577 ENSP00000261835 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (CYP46)
Human Recombinant Proteins from Abnova (CYP46A1)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

5 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005783 endoplasmic reticulum TAS10377398
GO:0005789 endoplasmic reticulum membrane IEA--
GO:0005792 microsome IEA--
GO:0016020 membrane IEA--
GO:0016021 integral to membrane IEA--
About this table

Antibodies for CYP46A1: 
Invitrogen Antibodies for CYP46A1
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for CYP46A1
Browse R&D Systems for Antibodies
Antibodies from Abcam (CYP46), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (CYP46A1)
Novus Biologicals Antibodies for CYP46A1

Assays for CYP46A1: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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4 InterPro domains/families:
 IPR001128 Cyt_P450
 IPR017973 Cyt_P450_C
 IPR017972 Cyt_P450_CS
 IPR002401 Cyt_P450_E_grp-I


   GeneDecks  CYP46A1 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q9Y6A2

ProtoNet protein and cluster: Q9Y6A2

UniProtKB/Swiss-Prot: CP46A_HUMAN, Q9Y6A2
Similarity: Belongs to the cytochrome P450 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (CYP46A1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (CYP46A1)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006668

              Applied Biosystems Silencer® siRNAs for CYP46A1

              Sigma-Aldrich siRNA and siRNA Panels for CYP46A1  
                     Sigma-Aldrich shRNA for CYP46A1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for CYP46A1
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006668
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006668
                                 untagged cDNA clone in CMV expression vector: NM_006668 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_006668

UniProtKB/Swiss-Prot: CP46A_HUMAN, Q9Y6A2
Function: Involved in the turnover of cholesterol. It converts cholesterol into
24S-hydroxycholesterol and, to a lesser extent, 25-hydroxycholesterol
Catalytic activity: Cholesterol + NADPH + O(2) = (24S)-24-hydroxycholesterol + NADP(+) + H(2)O
Biophysicochemical properties: Kinetic parameters: KM=2.2 uM for 24(S)-hydroxycholesterol;
Enzyme Number (IUBMB): EC 1.14.13.98 

1 MGI mutant phenotype (inferred from 1 allele(MGI details for Cyp46a1):

homeostasis/metabolism

5 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0008395 steroid hydroxylase activity TAS10377398
GO:0009055 electron carrier activity IEA--
GO:0020037 heme binding IEA--
GO:0033781 cholesterol 24-hydroxylase activity IEA--
GO:0046872 metal ion binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Invitrogen iPath™ Online BioAtlas - Pathway for CYP46A1 (Maps provided by GeneGo):
 Cholesterol metabolism II

   GeneDecks  CYP46A1 for the pathways selected above  
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for  CYP46A1  (Your Favorite Gene powered by Ingenuity) 
 Ascorbate and Aldarate Metabolism
 Sphingolipid Metabolism
 Stilbene, Coumarine and Lignin Biosynthesis
 Biosynthesis of Steroids

   GeneDecks  CYP46A1 for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  CYP46A1 


5/7 Interacting proteins for CYP46A1 (ENSP000002618353) via UniProtKB, MINT, and/or STRING (see all 7 )
InteractantInteraction Details
GeneCardExternal ID(s)
ABCA2ENSP000003472053STRING (score=.828)
APOEENSP000002524863STRING (score=.822)
APBB2ENSP000003189653STRING (score=.802)
ABCA1ENSP000003638683STRING (score=.742)
BACE1ENSP000003185853STRING (score=.714)
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5 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006629 lipid metabolic process IEA--
GO:0006707 cholesterol catabolic process TAS10377398
GO:0007399 nervous system development TAS10377398
GO:0008202 steroid metabolic process IEA--
GO:0055114 oxidation reduction IEA--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Enzo Life Sciences drugs & compounds for CYP46A1
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for CYP46A1
3 Novoseek chemical compound relationships for CYP46A1 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
24s-hydroxy-cholesterol 97.93 36 15975088 (5), 16321981 (3), 19286353 (2), 12232784 (2) (see all 18)
cholesterol 70.55 130 19286353 (4), 16321981 (4), 19317426 (4), 16734927 (4) (see all 37)
lathosterol 65.71 1 15975088 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (CYP46A1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (CYP46A1)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006668

              Sigma-Aldrich siRNA and siRNA Panels for CYP46A1  
                     Sigma-Aldrich shRNA for CYP46A1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_006668  

REFSEQ mRNAs for CYP46A1 gene: 

NM_006668.1   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_006668  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006668
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006668
                                 untagged cDNA clone in CMV expression vector: NM_006668 

Additional cDNA sequence: 

AB209749.1 AF094480.1 AK090886.1 AK295216.1 BC022539.1 BC128037.1 

3 DOTS entries:

DT.108005  DT.120794727  DT.97821898 

24/31 AceView cDNA sequences (see all 31 ):

NM_006668 BU070694 CD623075 AF094480 BC022539 H06539 CD623079 BU741551 
AI554732 BM727874 CD623081 BI552024 AW469811 AA961615 BQ066937 AK090886 
BM805680 BU070933 BG704256 CF456253 BM548130 AA760981 CD623072 BF930893 

highest scoring ESTs for CYP46A1:

AA961615 AF094480 AK090886 BC022539 BF930893 BM805680 H51951 AA760981 AI554732 AW469811 

Unigene Cluster for CYP46A1:

Cytochrome P450, family 46, subfamily A, polypeptide 1
Hs.25121  [show with all ESTs]
Unigene Representative Sequence: AB209749


GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for CYP46A1

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15
SP1:                                -                                                                     
SP2:                                                                                -                     

About this scheme

ECgene alternative splicing isoforms for CYP46A1

2 Ensembl transcripts including schematic representations:
ENST00000380228  ENST00000261835  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

CYP46A1 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for CYP46A1

1 / 2 / 3

3 probe-sets matching CYP46A1 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
45429_at2, 3 U95-B 1 1.00 1.00 1.00 1.00 AA961615 0.80 1.00 0.91 1

220331_at2, 3 U133-A 1 1.00 1.00 -- -- NM_006668 0.60 1.00 0.82 1

220331_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  CYP46A1 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: GCCCTTCCTG

SOURCE GeneReport for Unigene cluster: Hs.25121

UniProtKB/Swiss-Prot: CP46A_HUMAN, Q9Y6A2
Tissue specificity: Expressed in brain. The mRNA was broadly distributed with higher levels in gray
matter zones and lower levels in regions rich in white matter. Not detected in fetal sample but
its expression increases linearly with age

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for CYP46A1 gene from 5/11 species (see all 11 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
LOC4804321   -- similar to Cytochrome p450 46A1 (Cholesterol 24-hydroxylase) 90.25(n)
94.1(a)
480432  XM_537552.2  XP_537552.2 
chimpanzee
(Pan troglodytes)
CYP46A11   -- cytochrome P450, family 46, subfamily A, polypeptide more 99.42(n)
99.78(a)
453154  XM_510158.2  XP_510158.2 
cow
(Bos taurus)
CYP46A11   -- cytochrome P450, family 46, subfamily A, polypeptide more 90.33(n)
93(a)
506438  NM_001076810.1  NP_001070278.1 
rat
(Rattus norvegicus)
Cyp46a11   -- cytochrome P450, family 46, subfamily a, polypeptide more 89.73(n)
95(a)
362782  XM_343108.3  XP_343109.1 
mouse
(Mus musculus)
Cyp46a11, 5 125
cytochrome P450, family 46, subfamily a, polypeptide more1, 5 89.6(n)1
94.8(a)1
131161  NM_010010.11  NP_034140.11 
 AF0944795  AK1407405  (see all 7)
About this table        Species with no ortholog for CYP46A1

ENSEMBL Gene Tree for CYP46A1
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

  --
(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/250 NCBI SNPs in CYP46A1 are shown (see all 250 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 78)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 14 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs41450391,2
A,C,F,H99219255(-) TGGGGG/TTTGGA 1 -- ng518Minor allele frequency- T:0.42EU EA WA 840
rs80036021,2
A,C,F99218714(+) CCTCTC/TCAGAC 1 -- ng514Minor allele frequency- T:0.42NA EA 362
rs37833201,2
A,C99219211(+) CCCTAA/GCTATA 1 -- ng510--------
--
rs80197531,2
A,C99218651(+) ggattC/Tgctgt 1 -- ng510--------
--
rs118506431,2
A99263437(+) TGCTCA/GTCTGT 1 -- ng310--------
rs155061,2
F99263312(-) TCACAC/TGCAGA 1 -- ut312Minor allele frequency- T:0.34MN 372
rs80227221,2
A,C,F,H99252478(+) TGGTAA/GTGCAG 1 -- int17Minor allele frequency- G:0.35EU EA WA NA 552
rs71570321,2
A,C,F,H99254776(+) GCAAGG/TGTCAA 1 -- int115Minor allele frequency- N:0.00EU EA WA NA 1328
rs37529581,2
A,C,F,H99252440(+) GAAGCC/ACCATC 1 -- int15Minor allele frequency- A:0.19EA EU WA 1170
rs80183811,2
A,C,F,H99259883(+) CTTACA/TTTGTC 1 -- int18Minor allele frequency- T:0.28EU EA WA 834
About this table

HapMap Linkage Disequilibrium images for CYP46A1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 604087

2 Novoseek disease relationships for CYP46A1 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
alzheimers disease 71.51 40 19286353 (2), 15034781 (2), 15106838 (2), 15331159 (2) (see all 22)
senile plaques 40.76 6 15148325 (2), 15331159 (1)
About this table

Human Gene Mutation Database: CYP46A1
Genetic Association Database: CYP46A1
Human Genome Epidemiology Navigator: CYP46A1 (28 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/58 PubMed articles for CYP46A1 gene (see all 58 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 10858 HGNC: 2641 AceView: CYP46A1 Ensembl:ENSG00000036530 euGenes: HUgn10858
ECgene: CYP46A1 H-InvDB: CYP46A1
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for CYP46A1:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Drugs for CYP46A1
 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for CYP46A1

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