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Aliases & Descriptions for CYP3A43 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions cytochrome P450, family 3, subfamily A, polypeptide 431 2 cytochrome P450 polypeptide 432 cytochrome P450, subfamily IIIA, polypeptide 431 2 MGC1193162 MGC1193152 EC 1.14.14.13 cytochrome P450 3A432
Search outside databases for aliases for CYP3A43 genePrevious GC identifers: GC07P097960 GC07P099023 GC07P099037 GC07P099070 GC07P099263
Summaries for CYP3A43 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for CYP3A43 : This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This enzyme has a low level of testosterone hydroxylase activity. Although it bears homology to some drug-metabolizing cytochrome P450s, it is unknown whether the enzyme is also involved in xenobiotic metabolism. This gene is part of a cluster of cytochrome P450 genes on chromosome 7q21.1. Alternate splicing of this gene results in three transcript variants encoding different isoforms. (provided by RefSeq) UniProtKB/Swiss-Prot: CP343_HUMAN, Q9HB55 Function : Exhibits low testosterone 6-beta-hydroxylase activity
Genomic Views for CYP3A43 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
SABiosciences )About This Section
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CYP3A43 gene upstream (promoter) region :GATA-1 C/EBPalpha CHOP-10 PPAR-gamma1 PPAR-gamma2 Epigenetics: Search SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for CYP3A43 Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7q21.1 Ensembl cytogenetic band: 7q22.1 HGNC cytogenetic band: 7q21.1 CYP3A43 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07P099426: view genomic region
(about GC identifiers )
Start:
99,425,636 bp from pter
End:
99,464,173 bp from pter
Size:
38,538 bases
Orientation:
plus strand
1 alternative location : Chr 7+,CRA_TCAG 98,785,456-98,823,992
RefSeq DNA sequence: NC_000007.13 NT_007933.15 NT_079595.2 Proteins for CYP3A43 gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: CP343_HUMAN, Q9HB55 (See
protein sequence )Recommended Name: Cytochrome P450 3A43 Size : 503 amino acids; 57670 Da
Cofactor : Heme group (By similarity)
Subcellular location : Endoplasmic reticulum membrane; Peripheral membrane protein. Microsome membrane; Peripheralmembrane protein
Secondary accessions : Q9HB52 Q9HB53 Q9HB54 Q9HB57Alternative splicing : 5 isoforms : Q9HB55-1 Q9HB55-2 Q9HB55-3 Q9HB55-4 Q9HB55-5 (Additional isoforms seem to exist)
REFSEQ proteins (3 alternative transcripts):
NP_073731.1 NP_476436.1 NP_476437.1 ENSEMBL proteins: ENSP00000222382 ENSP00000346887 ENSP00000415221 ENSP00000416581 ENSP00000405557 ENSP00000401521 ENSP00000400316 ENSP00000411653 ENSP00000312110 ENSP00000368975 ENSP00000397332 ENSP00000345351 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
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CYP3A43 for ontologies About GeneDecksing Antibodies for CYP3A43: Assays for CYP3A43:
Protein
Domains/ Families for CYP3A43 gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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CYP3A43 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9HB55 ProtoNet protein and cluster: Q9HB55
2 Blocks protein families : IPB002401 E-class P450 group I signature IPB008072 CYP3A P450 family signature UniProtKB/Swiss-Prot: CP343_HUMAN, Q9HB55 Similarity : Belongs to the cytochrome P450 family
Gene Function for CYP3A43 gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
Applied Biosystems ,
Sigma-Aldrich , Clones from
Millipore ,
Sigma-Aldrich ,
OriGene ,
Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: CP343_HUMAN, Q9HB55 Function : Exhibits low testosterone 6-beta-hydroxylase activityCatalytic activity : RH + reduced flavoprotein + O(2) = ROH + oxidized flavoprotein + H(2)OInduction : By rifampicinEnzyme Number (IUBMB): EC 1.14.14.1
5/6 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 6
):
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CYP3A43 for ontologies About GeneDecksing
Pathways & Interactions for CYP3A43 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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CYP3A43 for pathways About GeneDecksing 5 Sigma-Aldrich "Your Favorite Gene" Pathways for CYP3A43 (Your Favorite Gene powered by Ingenuity) 5/7 Kegg Pathways (Kegg details for CYP3A43 ) (see all 7
): Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CYP3A43 5/48 Interacting proteins for CYP3A43 (ENSP00000222382 3 ) via UniProtKB, MINT, and/or STRING (see all 48
) About this table 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0055114 oxidation reduction
IEA --
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CYP3A43 for ontologies About GeneDecksing
Drugs & Compounds for CYP3A43 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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CYP3A43 for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for CYP3A43
Browse Tocris compounds for CYP3A43 3 Novoseek chemical compound relationships for CYP3A43 gene
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Transcripts for CYP3A43 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Primers from
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User Feedback Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_022820 NM_057095 NM_057096 Clones: Origene GFP tagged cDNA clones in CMV expression vector (see all 3 ): CYP3A43 Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): CYP3A43 Origene untagged cDNA clones in CMV expression vector (see all 3 ): CYP3A43
Primers: Origene genome-wide validated SYBR primer pairs: CYP3A43 SABiosciences RT2 qPCR Primer Assay for CYP3A43: PPH01261A
REFSEQ mRNAs for CYP3A43 gene (3 alternative transcripts): NM_022820.3 NM_057095.1 NM_057096.2
Additional cDNA sequence: AF280108.1 AF280109.1 AF280110.1 AF280111.1 AF280112.1 AF280113.1 AF319634.1 AF337813.1 AY390423.1 AY390424.1 AY390425.1 AY390426.1 BC100981.3 BC100982.3
3 DOTS entries : DT.104214 DT.100745110 DT.99960925
20 AceView cDNA sequences :
AF280111 BX092633 AF280109 AF319634 AF280108 AY390425 NM_057096 AY390423 AF280112 AY390424 NM_057095 NM_022820 AW662829 AY390426 BX951468 AA417369 AF280110 AF280113 AA416822 AF337813
highest scoring ESTs for CYP3A43 :AA417369 AF280108 AF280109 AF280110 AF280111 AF280113 AF319634 AF337813 AY390423 AY390424 Unigene Cluster for CYP3A43:
Cytochrome P450, family 3, subfamily A, polypeptide 43 Hs.306220 [show with all ESTs ] Unigene Representative Sequence: NM_022820 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for CYP3A43 (see all 6
) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b SP1 :         -         -                       SP2 :         -         -       -                 SP3 :         -         -       -                 SP4 :         -         -       -           -       SP5 :             -   -   -   -   -   -                
About this scheme ECgene alternative splicing isoforms for CYP3A43 18 Ensembl transcripts including schematic representations : ENST00000222382
ENST00000472352
ENST00000354829
ENST00000436834
ENST00000417625
ENST00000463915
ENST00000444905
ENST00000415413
ENST00000477658
ENST00000495115
ENST00000433277
ENST00000491648
ENST00000481362
ENST00000434806
ENST00000312017
ENST00000379654
ENST00000421837
ENST00000342499
Expression for CYP3A43 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback CYP3A43 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CYP3A43 1 / 2 / 3
8 probe-sets matching CYP3A43 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
207773_x_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_022820
0.60
1.00
0.82
1
211440_x_at2 , 3
U133-A
1
1.00
1.00
--
--
AF280110
0.80
1.00
0.91
1
211442_x_at2 , 3
U133-A
4
1.00
0.93
--
--
AF280111
0.80
1.00
0.91
1
211441_x_at2 , 3
U133-A
4
0.91
0.93
--
--
AF280113
0.80
1.00
0.91
1
207773_x_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
211440_x_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
211442_x_at2
U133Plus2
4
1.00
0.93
--
--
--
--
--
--
--
211441_x_at2
U133Plus2
4
0.91
0.93
--
--
--
--
--
--
--
About this table Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTCCATTTGT SOURCE GeneReport for Unigene cluster: Hs.306220 UniProtKB/Swiss-Prot: CP343_HUMAN, Q9HB55 Tissue specificity : Highest expression level in prostate. Also expressed in liver, kidney, pancreas, fetal liver andfetal skeletal muscle
Primers: Origene genome-wide validated SYBR primer pairs: CYP3A43 SABiosciences RT2 qPCR Primer Assay for CYP3A43: PPH01261A
Orthologs for CYP3A43 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CYP3A43 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for CYP3A43 ENSEMBL Gene Tree for CYP3A43 Paralogs for CYP3A43 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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User Feedback Paralogs for CYP3A43 gene CYP4F22 2 CYP4F11 2 CYP4F2 2 CYP4F3 2 CYP4F8 2 CYP46A1 2 LOC388514 2 CYP4B1 2 CYP3A5 2 CYP4X1 2 TBXAS1 2 CYP3A4 2 CYP3A7 2 CYP4V2 2 CYP4A22 2 CYP4A11 2 CYP4Z1 2 CYP4F12 2
CYP3A43 for paralogs About GeneDecksing
Genomic Variants for CYP3A43 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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User Feedback UniProtKB/Swiss-Prot: CP343_HUMAN, Q9HB55 Polymorphism : At protein level, three alleles are known: CYP3A43*1, CYP3A43*2 and CYP3A43*3. The sequence shown is thatof CYP3A43*1, which is the most frequent allele. The allele CYP3A43*2 is likely to be non-functional
HapMap Linkage Disequilibrium images for CYP3A43 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 4 variations for CYP3A43 4 CNVs : 94732 64899 82103 94733
Disorders & Mutations for CYP3A43 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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CYP3A43 for disorders About GeneDecksing
OMIM: 606534 Locus Specific Mutation Databases: CYP3A43 Human Gene Mutation Database : CYP3A43 Genetic Association Database: CYP3A43 Human Genome Epidemiology Navigator: CYP3A43 (7 documents)
Medical News for CYP3A43 gene (Possibly Related Articles in
Doctor's Guide )
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User Feedback --
Publications for CYP3A43 gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 10/21 PubMed articles for CYP3A43 gene (see all 21
): First report of a genetic polymorphism of the cytochrome P450 3A43 (CYP3A43 ) gene: identification of a loss-of-function variant. (PubMed id 14695544) 1, 3 , 4 , 6 Cauffiez C.... Broly F. (2004) Genomic organization of the human CYP3A locus: identification of a new, inducible CYP3A gene. (PubMed id 11266076) 1, 2, 3 , 4 Gellner K....Wojnowski L. (2001) cDNA cloning and initial characterization of CYP3A43 , a novel human cytochrome P450. (PubMed id 11160876) 2, 3 , 4 Domanski T.L.... Zaphiropoulos P.G. (2001) CYP3A43 Pro(340)Ala polymorphism and prostate cancer risk in African Americans and Caucasians. (PubMed id 15894682) 3 , 6 Stone A....Lang N.P. (2005) CYP3A4, CYP3A5, and CYP3A43 genotypes and haplotypes in the etiology and severity of prostate cancer. (PubMed id 15548719) 3 , 6 Zeigler-Johnson C....Rebbeck T.R. (2004) An unappreciated role for RNA surveillance. (PubMed id 14759258) 3 , 4 Hillman R.T.... Brenner S.E. (2004) Intergenic mRNA molecules resulting from trans-splicing. (PubMed id 11726664) 3 , 4 Finta C. and Zaphiropoulos P.G. (2002) Cloning and tissue distribution of a novel human cytochrome P450 of the CYP3A subfamily, CYP3A43 . (PubMed id 11243885) 3 , 4 Westlind A.... Oscarson M. (2001) Analysis of restriction fragment length polymorphism of cytochrome P450 3A43 gene and evaluation of the incidence of CYP3A43 *1B allele in europeoid residents of West Siberia. (PubMed id 16848237) 1, 3 Shchepotina E.G....Lyakhovich V.V. (2005) Association study between single-nucleotide polymorphisms in 199 drug-related genes and commonly measured quantitative traits of 752 healthy Japanese subjects. (PubMed id 19343046) 3 Saito A....Kamatani N. (2009)
Search for CYP3A43 gene
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Genome Databases showing CYP3A43 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing CYP3A43 gene
(According to HUGE )
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Specialized Databases showing CYP3A43 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Cytochrome P450 Allele Nomenclature Committee http://www.cypalleles.ki.se/cyp3a43.htm
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User Feedback Patent Information for CYP3A43 gene: Search GeneIP for patents involving CYP3A43 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search Services for CYP3A43 gene (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Novus Biologicals ,Epitomics , Sigma-Aldrich , R&D Systems , SABiosciences , Millipore , Abnova , Clones available from OriGene , Sigma-Aldrich , Sino Biological , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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User Feedback Products for CYP3A43:
Search Tocris compounds for CYP3A43
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