CYP2A13 Gene
protein-coding GIFtS : 59
GC19P041594
cytochrome P450, family 2, subfamily A, polypeptide 13 (Previous names: cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 13 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for CYP2A13 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions cytochrome P450, family 2, subfamily A, polypeptide 131 2 CYPIIA132 3 CPAD1 2 cytochrome P450 2A132 CYP2A1 2 EC 1.14.14.13 cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 131 2
Search outside databases for aliases for CYP2A13 genePrevious GC identifers: GC19P042233 GC19P041986 GC19P046108 GC19P046126 GC19P046130 GC19P046286
Summaries for CYP2A13 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for CYP2A13 : This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This protein localizes to the endoplasmic reticulum. Although its endogenous substrate has not been determined, it is known to metabolize 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone, a major nitrosamine specific to tobacco. This gene is part of a large cluster of cytochrome P450 genes from the CYP2A, CYP2B and CYP2F subfamilies on chromosome 19q. (provided by RefSeq) UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696 Function : Exhibits a coumarin 7-hydroxylase activity. Active in the metabolic activation of hexamethylphosphoramide,N,N-dimethylaniline, 2'-methoxyacetophenone, N-nitrosomethylphenylamine, and the tobacco-specific carcinogen, 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone. Possesses phenacetin O-deethylation activity Gene Wiki entry for CYP2A13
Genomic Views for CYP2A13 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
SABiosciences )About This Section
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CYP2A13 gene upstream (promoter) region :C/EBPalpha NRSF form 1 NRSF form 2 Max1 c-Myc NF-1 ISGF-3 FOXI1 POU2F1 GR-alpha Epigenetics: SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for CYP2A13: MePH24661-1A Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19q13.2 Ensembl cytogenetic band: 19q13.2 HGNC cytogenetic band: 19q13.2 CYP2A13 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P041594: view genomic region
(about GC identifiers )
Start:
41,594,368 bp from pter
End:
41,602,099 bp from pter
Size:
7,732 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.9 NT_011109.16 Proteins for CYP2A13 gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696 (See
protein sequence )Recommended Name: Cytochrome P450 2A13 Size : 494 amino acids; 56688 Da
Cofactor : Heme group
Subcellular location : Endoplasmic reticulum membrane; Peripheral membrane protein. Microsome membrane; Peripheralmembrane protein
PDB structures from and Proteopedia : 2P85 (3D)
 2PG5 (3D)
 2PG6 (3D)
 2PG7 (3D)
 
Secondary accessions : Q53YR8 Q6R569 Q6R570 Q9H2X2
REFSEQ proteins: NP_000757.2 ENSEMBL proteins: ENSP00000332679 ENSP00000413250 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
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CYP2A13 for ontologies About GeneDecksing Antibodies for CYP2A13: Assays for CYP2A13:
Protein
Domains/ Families for CYP2A13 gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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CYP2A13 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q16696 ProtoNet protein and cluster: Q16696
2 Blocks protein families : IPB002401 E-class P450 group I signature IPB008067 CYP2A P450 family signature UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696 Similarity : Belongs to the cytochrome P450 family
Gene Function for CYP2A13 gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
Applied Biosystems ,
Sigma-Aldrich , Clones from
Millipore ,
Sigma-Aldrich ,
OriGene ,
Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696 Function : Exhibits a coumarin 7-hydroxylase activity. Active in the metabolic activation of hexamethylphosphoramide,N,N-dimethylaniline, 2'-methoxyacetophenone, N-nitrosomethylphenylamine, and the tobacco-specific carcinogen, 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone. Possesses phenacetin O-deethylation activity Catalytic activity : RH + reduced flavoprotein + O(2) = ROH + oxidized flavoprotein + H(2)OBiophysicochemical properties : Kinetic parameters: KM=10.7 uM for phenacetin;Enzyme Number (IUBMB): EC 1.14.14.1
Genatlas biochemistry entry for CYP2A13 :cytochrome P450,subfamily IIA (phenobarbital-inducible),polypeptide 13 5/7 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 7
):
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CYP2A13 for ontologies About GeneDecksing
Pathways & Interactions for CYP2A13 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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CYP2A13 for pathways About GeneDecksing 2 Millipore Pathways for CYP2A13 5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for CYP2A13 (Your Favorite Gene powered by Ingenuity) (see all 6
)5 Kegg Pathways (Kegg details for CYP2A13) : Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CYP2A13 4 Interacting proteins for CYP2A13 (ENSP00000332679 3 ) via UniProtKB, MINT, and/or STRING About this table 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0055114 oxidation reduction
IEA --
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CYP2A13 for ontologies About GeneDecksing
Drugs & Compounds for CYP2A13 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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CYP2A13 for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for CYP2A13
Browse Tocris compounds for CYP2A13 10/35 Novoseek chemical compound relationships for CYP2A13 gene (see all 35
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone
50.38
18
17717079 (2), 17671098 (2), 19608696 (1), 18423367 (1) (see all 16 )
coumarin
23.46
13
15196988 (4), 19251817 (3), 17922361 (2), 19074523 (1) (see all 7 )
2-methoxyacetophenone
16.56
4
19251817 (3), 11016631 (1)
aflatoxin b1
15.58
11
16385575 (5), 16917071 (2), 16815959 (2), 18779312 (1) (see all 5 )
phenacetin
13.75
7
18779312 (4), 17178771 (3)
8 methoxypsoralen
11.65
7
15958517 (3), 18813816 (2), 17671098 (1), 15579482 (1)
3-methylindole
10.30
5
19608696 (4), 20187624 (1)
nicotine
10.00
13
16188955 (5), 15528319 (5), 19434638 (1), 18779312 (1) (see all 5 )
75-20 c
8.78
2
15175424 (2)
cotinine
8.75
6
15528319 (4), 18779312 (1), 16188955 (1)
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Transcripts for CYP2A13 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Primers from
OriGene and/or
SABiosciences , Expression Assays from Applied Biosystems )About This Section
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User Feedback Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_000766 Clones: Origene GFP tagged cDNA clones in CMV expression vector: CYP2A13 Origene Myc/DDK tagged cDNA clones in CMV expression vector: CYP2A13 Origene untagged cDNA clones in CMV expression vector: CYP2A13
Primers: Origene genome-wide validated SYBR primer pairs: CYP2A13 SABiosciences RT2 qPCR Primer Assay for CYP2A13: PPH13808A
REFSEQ mRNAs for CYP2A13 gene: NM_000766.3
Additional cDNA sequence: AF209774.1 AY513604.1 AY513605.1 AY513606.1 AY513607.1 AY513608.1 AY513609.1
2 DOTS entries : DT.102820753 DT.121503364
11 AceView cDNA sequences :
AY513606 NM_000766 AY513605 AY513604 AF209774 AY513607 AY513608 AY513609 BM975825 CD609500 CD609501
highest scoring ESTs for CYP2A13 :AF209774 AY513604 AY513605 AY513606 AY513607 AY513608 AY513609 BM975825 NM_000766 AV698396 Unigene Cluster for CYP2A13:
Cytochrome P450, family 2, subfamily A, polypeptide 13 Hs.567252 Unigene Representative Sequence: NM_000766 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000330436
ENST00000430558
Expression for CYP2A13 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback CYP2A13 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CYP2A13 1 / 2 / 3
5 probe-sets matching CYP2A13 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
1552_i_at2 , 3
U95-A
1
0.50
1.00
0.50
1.46
U22028
0.20
1.00
0.72
1
1554_f_at2 , 3
U95-A
3
0.50
0.61
0.80
0.84
U22028
0.20
1.00
0.72
1
1553_r_at2 , 3
U95-A
1
0.36
1.00
0.74
0.84
U22028
0.20
1.00
0.72
1
208327_at2 , 3
U133-A
2
0.55
0.92
--
--
NM_000766
0.60
1.00
0.82
1
208327_at2
U133Plus2
2
0.55
0.92
--
--
--
--
--
--
--
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CYP2A13 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.567252 Expression variation in blood from EXPOLDB for CYP2A13
UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696 Tissue specificity : Expressed in liver and a number of extrahepatic tissues, including nasal mucosa, lung, trachea,brain, mammary gland, prostate, testis, and uterus, but not in heart, kidney, bone marrow, colon, small intestine, spleen, stomach, thymus, or skeletal muscle
Primers: Origene genome-wide validated SYBR primer pairs: CYP2A13 SABiosciences RT2 qPCR Primer Assay for CYP2A13: PPH13808A
Orthologs for CYP2A13 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CYP2A13 gene from 5/8 species (see all 8
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
chimpanzee (Pan troglodytes)
LOC7388231
--
similar to cytochrome P450 2A13 variant 5
83.14(n) 81.61(a)
738823 XM_001139878.1 XP_001139878.1
rat (Rattus norvegicus)
Cyp2a3a1
--
cytochrome P450, family 2, subfamily A, polypeptide more
85.63(n) 88.87(a)
24299 NM_012542.1 NP_036674.1
mouse (Mus musculus)
Cyp2a51
--
cytochrome P450, family 2, subfamily a, polypeptide more
85.49(n) 88.46(a)
13087 NM_007812.3 NP_031838.2
zebrafish (Danio rerio)
zgc558562
--
hypothetical protein MGC55856
73.45(n)
393204 BC046898.1
fruit fly (Drosophila melanogaster)
Cyp303a13
35F5
cytochrome P450
28(a) (best of 2)
--
About this table Species with no ortholog for CYP2A13 ENSEMBL Gene Tree for CYP2A13 Paralogs for CYP2A13 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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User Feedback Paralogs for CYP2A13 gene CYP2A6 1 2 CYP2A7 1 CYP2W1 2 CYP2C8 2 CYP2G1P 2 CYP2F1 2 CYP2C19 2 CYP2B6 2 CYP2R1 2 CYP2U1 2 CYP2J2 2 CYP2S1 2 CYP2E1 2 CYP2C9 2 CYP2D6 2 CYP2D7P1 2 CYP2C18 2
CYP2A13 for paralogs About GeneDecksing
Genomic Variants for CYP2A13 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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User Feedback UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696 Polymorphism : The frequencies of the Cys-257 allele in white, black, Hispanic, and Asian individuals are 1.9%, 14.4%,5.8%, and 7.7%, respectively. The Cys-257 variant is 37 to 56% less active than the wild-type Arg-257 protein toward all substrates tested
HapMap Linkage Disequilibrium images for CYP2A13 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CYP2A13: --
Disorders & Mutations for CYP2A13 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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CYP2A13 for disorders About GeneDecksing
OMIM: 608055 10/14 Novoseek disease relationships for CYP2A13 gene (see all 14
)
About this table Locus Specific Mutation Databases: CYP2A13 Human Gene Mutation Database : CYP2A13 Genetic Association Database: CYP2A13 Human Genome Epidemiology Navigator: CYP2A13 (15 documents)
Medical News for CYP2A13 gene (Possibly Related Articles in
Doctor's Guide )
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User Feedback --
Publications for CYP2A13 gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 15/60 PubMed articles for CYP2A13 gene (see all 60
): Genetic polymorphisms of the human CYP2A13 gene: identification of single-nucleotide polymorphisms and functional characterization of an Arg257Cys variant. (PubMed id 12130698) 1, 3 , 4 , 6 Zhang X.... Ding X. (2002) A genetic polymorphism in coumarin 7-hydroxylation: sequence of the human CYP2A genes and identification of variant CYP2A6 alleles. (PubMed id 7668294) 1, 2, 3 , 4 Fernandez-Salguero P.... Idle J.R. (1995) Genetic polymorphism of the human cytochrome CYP2A13 in a French population: implication in lung cancer susceptibility. (PubMed id 15063809) 1, 3 , 4 , 6 Cauffiez C.... Broly F. (2004) Substantial reduction in risk of lung adenocarcinoma associated with genetic polymorphism in CYP2A13, the most active cytochrome P450 for the metabolic activation of tobacco-specific carcinogen NNK. (PubMed id 14633739) 1, 3 , 6 Wang H....Lin D. (2003) Human cytochrome P450 CYP2A13: predominant expression in the respiratory tract and its high efficiency metabolic activation of a tobacco-specific carcinogen, 4-(methylnitrosamino)-1-(3-pyridyl)-1- butanone. (PubMed id 11016631) 1, 3 , 4 Su T.... Ding X. (2000) Eighteen novel polymorphisms of the CYP2A13 gene in Japanese. (PubMed id 15618722) 1, 3 , 4 Fujieda M.... Kamataki T. (2003) Structure of the human lung cytochrome P450 2A13. (PubMed id 17428784) 1, 3 , 4 Smith B.D....Scott E.E. (2007) CYP2A13 genetic polymorphism in French Caucasian, Gabonese and Tunisian populations. (PubMed id 16316926) 1, 3 , 6 Cauffiez C....Broly F. (2005) Arg257Cys polymorphism of CYP2A13 in a Chinese population. (PubMed id 15115698) 1, 3 , 6 Cheng X.Y....Zhou H.H. (2004) Single nucleotide polymorphisms of the human cyp2a13 gene: evidence for a null allele. (PubMed id 12920161) 1, 3 , 6 Zhang X....Ding X. (2003) Identification of Val117 and Arg372 as critical amino acid residues for the activity difference between human CYP2A6 and CYP2A13 in coumarin 7-hydroxylation. (PubMed id 15196988) 1, 3 He X.Y....Hong J.Y. (2004) Association of NAT2, GSTM1, GSTT1, CYP2A6 , and CYP2A13 gene polymorphisms with susceptibility and clinicopathologic characteristics of bladder cancer in Central China. (PubMed id 19303722) 1, 3 Song D.K....Qiao B.P. (2009) CYP2A6 AND CYP2B6 are involved in nornicotine formation from nicotine in humans: interindividual differences in these contributions. (PubMed id 16135656) 1 Yamanaka H....Yokoi T. (2005) CYP2A6 polymorphisms and risk for tobacco-related can cers. (PubMed id 19018727) 1 Rossini A....Pinto L.F. (year=2008;month=Nov;day=) Low frequency of CYP2A6 gene polymorphism as revealed by a one-step polymerase chain reaction method. (PubMed id 10471064) 1 Chen G.F....Kadlubar F.F. (1999)
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Name Description
Cytochrome P450 Allele Nomenclature Committee http://www.cypalleles.ki.se/cyp2a13.htm
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User Feedback Patent Information for CYP2A13 gene: Search GeneIP for patents involving CYP2A13 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search Services for CYP2A13 gene (Reagents available from Applied Biosystems , Antibodies and assays by Cell
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