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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CYP2A13 Gene

protein-coding   GIFtS: 62
GCID: GC19P041594

cytochrome P450, family 2, subfamily A, polypeptide 13

(Previous names: cytochrome P450, subfamily IIA (phenobarbital-inducible),...)
 Explore 12 diseases affiliated with
CYP2A13 via our new
 Human Malady Compendium 
Biological research products
for CYP2A13
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Cytochrome P450, Family 2, Subfamily A, Polypeptide 131 2     CYPIIA132 3
CPAD1 2     EC 1.14.14.13 8
CYP2A1 2     Cytochrome P450 2A132
Cytochrome P450, Subfamily IIA (Phenobarbital-Inducible), Polypeptide 131 2     

External Ids:    HGNC: 26081   Entrez Gene: 15532   Ensembl: ENSG000001978387   OMIM: 6080555   UniProtKB: Q166963   

Export aliases for CYP2A13 gene to outside databases

Previous GC identifers: GC19P042233 GC19P041986 GC19P046108 GC19P046126 GC19P046130 GC19P046286 GC19P038026


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CYP2A13:
This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are
monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and
other lipids. This protein localizes to the endoplasmic reticulum. Although its endogenous substrate has not been
determined, it is known to metabolize 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone, a major nitrosamine specific to
tobacco. This gene is part of a large cluster of cytochrome P450 genes from the CYP2A, CYP2B and CYP2F subfamilies on
chromosome 19q. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696
Function: Exhibits a coumarin 7-hydroxylase activity. Active in the metabolic activation of hexamethylphosphoramide,
N,N-dimethylaniline, 2'-methoxyacetophenone, N-nitrosomethylphenylamine, and the tobacco-specific carcinogen,
4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone. Possesses phenacetin O-deethylation activity

Gene Wiki entry for CYP2A13


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011109.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CYP2A13 gene promoter:
         NF-AT2   Sp1   NF-AT3   NF-AT1   NF-AT   C/EBPalpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCYP2A13 promoter sequence
   Search SABiosciences Chromatin IP Primers for CYP2A13

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CYP2A13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.2   Ensembl cytogenetic band:  19q13.2   HGNC cytogenetic band: 19q13.2

CYP2A13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CYP2A13 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P041594:  view genomic region     (about GC identifiers)

Start:
41,594,368 bp from pter      End:
41,602,099 bp from pter
Size:
7,732 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696 (See protein sequence)
Recommended Name: Cytochrome P450 2A13  
Size: 494 amino acids; 56688 Da
Cofactor: Heme group
Subcellular location: Endoplasmic reticulum membrane; Peripheral membrane protein. Microsome membrane; Peripheral
membrane protein
6/8 PDB 3D structures from and Proteopedia for CYP2A13 (see all 8):
2P85 (3D)        2PG5 (3D)        2PG6 (3D)        2PG7 (3D)        3T3S (3D)        4EJG (3D)    
Secondary accessions: Q53YR8 Q6R569 Q6R570 Q9H2X2

Explore the universe of human proteins at neXtProt for CYP2A13: NX_Q16696

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q16696

  • 4/28 DME Specific Peptides for CYP2A13 (Q16696) (see all 28)
     DRAKMPY  GKLPPGP  PGPTPLP  LLLMKHP 

    CYP2A13 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_000757.2  
    ENSEMBL proteins: 
     ENSP00000332679  
    Reactome Protein details: Q16696
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    Uscn Proteins for CYP2A13

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005789endoplasmic reticulum membrane TAS--
    GO:0005792microsome ----


    CYP2A13 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    CYP2A13 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR001128 Cyt_P450
     IPR017972 Cyt_P450_CS
     IPR002401 Cyt_P450_E_grp-I
     IPR008067 Cyt_P450_E_grp-I_CYP2A-like

    Graphical View of Domain Structure for InterPro Entry Q16696

    ProtoNet protein and cluster: Q16696

    2 Blocks protein families:
    IPB002401 E-class P450 group I signature
    IPB008067 CYP2A P450 family signature


    UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696
    Similarity: Belongs to the cytochrome P450 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696
    Function: Exhibits a coumarin 7-hydroxylase activity. Active in the metabolic activation of hexamethylphosphoramide,
    N,N-dimethylaniline, 2'-methoxyacetophenone, N-nitrosomethylphenylamine, and the tobacco-specific carcinogen,
    4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone. Possesses phenacetin O-deethylation activity
    Catalytic activity: RH + reduced flavoprotein + O(2) = ROH + oxidized flavoprotein + H(2)O
    Biophysicochemical properties: Kinetic parameters: KM=10.7 uM for phenacetin;

         Genatlas biochemistry entry for CYP2A13:
    cytochrome P450,subfamily IIA (phenobarbital-inducible),polypeptide 13

    Enzyme Number (IUBMB): EC 1.14.14.11 2

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    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005506iron ion binding IEA--
    GO:0009055electron carrier activity IEA--
    GO:0020037heme binding IDA17428784
    GO:0070330aromatase activity IEA--


    CYP2A13 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/12 super-pathways (see all 12About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Cytochrome P450 - arranged by substrate type
    Cytochrome P450 - arranged by substrate type1.00
    cytochrome P4500.73
    Phase 1 - Functionalization of compounds0.74
    2Xenobiotics
    Xenobiotics1.00
    CYP2E1 reactions0.65
    3Metabolism
    Metabolism1.00
    Metabolic pathways0.38
    4Drug metabolism - cytochrome P450
    Drug metabolism - cytochrome P4501.00
    Retinol metabolism0.40
    5Biological oxidations
    Biological oxidations1.00
    metapathway biotransformation0.41

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 EMD Millipore Pathways for CYP2A13
        Androstenedione and testosterone biosynthesis and metabolism p.1
    Acetaminophen metabolism


    2 GeneGo (Thomson Reuters) Pathways for CYP2A13
        Androstenedione and testosterone biosynthesis and metabolism p.1
    Acetaminophen metabolism

    4 BioSystems Pathways for CYP2A13 
        cytochrome P450
    Aflatoxin B1 metabolism
    Tryptophan metabolism
    metapathway biotransformation

    5/6        Reactome Pathways for CYP2A13 (see all 6)
        Cytochrome P450 - arranged by substrate type
    Xenobiotics
    Metabolism
    Biological oxidations
    Phase 1 - Functionalization of compounds

    1 PharmGKB Pathway for CYP2A13
        Nicotine Pathway, Pharmacokinetics

    5         Kegg Pathways  (Kegg details for CYP2A13):
        Caffeine metabolism
    Retinol metabolism
    Drug metabolism - cytochrome P450
    Drug metabolism - other enzymes
    Metabolic pathways


    CYP2A13 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CYP2A13

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/43 Interacting proteins for CYP2A13 (ENSP000003326794) via UniProtKB, MINT, STRING, and/or I2D (see all 43)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CYP1A1ENSP000003690504STRING: ENSP00000369050
    CYP1A2ENSP000003420074STRING: ENSP00000342007
    CYP26A1ENSP000002243564STRING: ENSP00000224356
    CYP26B1ENSP000000011464STRING: ENSP00000001146
    CYP26C1ENSP000002859494STRING: ENSP00000285949
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006805xenobiotic metabolic process TAS--
    GO:0044281small molecule metabolic process TAS--


    CYP2A13 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    CYP2A13 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for CYP2A13

    10/50 HMDB Compounds for CYP2A13 (see all 50)    About this table
    CompoundSynonyms CAS #PubMed Ids
    10-HETE10-hydroxyeicosa-all-cis-5,8,11,14-tetraenoate (see all 2)167697-52-1--
    11,12,15-THETA11,12,15-Trihydroxyicosatrienoic acid (see all 5)----
    11,12-Epoxyeicosatrienoic acid10-(3-(2-octenyl)oxiranyl)-5,8-Decadienoic acid (see all 15)81276-02-0--
    11,14,15-THETA(5Z,8Z,12E)-11,14,15-Trihydroxyeicosa-5,8,12-trienoic acid (see all 8)----
    11H-14,15-EETA14,15-Ep-11-HETrE (see all 11)219535-29-2--
    11beta-Hydroxytestosterone11beta,17beta-dihydroxyandrost-4-en-3-one 1816-85-9--
    12,13-EpOMEVernolic acid (see all 12)----
    13-HETE13-hydroxy-5Z,8Z,11Z,14Z-eicosatetraenoate (see all 2)151910-72-4--
    14,15-Epoxy-5,8,11-eicosatrienoic acid(5Z,8Z,11Z)-14,15-Epoxyicosa-5.8.11-trienoic acid (see all 11)81276-03-1--
    15(S)-HPETE(5Z,8Z,11Z,13E)-(15S)-15-Hydroperoxyicosa-5,8,11,13-tetraenoate (see all 8)70981-96-3--

    4 DrugBank Compounds for CYP2A13    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    MethoxsalenMethoxalen (see all 5)298-81-7enzymeinhibitor19934256
    NicotineL-Nicotine (see all 2)54-11-5enzymesubstrate19934256
    PhenacetinAcetophenetidin (see all 4)62-44-2enzymesubstrate19934256
    TestosteroneTES (see all 9)58-22-0enzymesubstrate19934256

    6 Novoseek chemical compound relationships for CYP2A13 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone 93.2 18 17671098 (2), 17717079 (2), 14633739 (1), 15115698 (1) (see all 13)
    coumarin 77.6 15 15196988 (4), 19251817 (3), 17922361 (2), 11016631 (1)
    8 methoxypsoralen 74.8 8 18813816 (2), 17671098 (1), 15579482 (1)
    aflatoxin b1 63 16 16385575 (4), 16815959 (2), 16917071 (2), 17178771 (1) (see all 5)
    nicotine 62 9 15528319 (4), 19434638 (1), 16135656 (1), 18779312 (1)
    cotinine 49.3 4 15528319 (3), 18779312 (1)

    Search CenterWatch for drugs/clinical trials and news about CYP2A13 / CP2AD 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CYP2A13 gene: 
    NM_000766.4  

    Unigene Cluster for CYP2A13:

    Cytochrome P450, family 2, subfamily A, polypeptide 13
    Hs.567252
    Unigene Representative Sequence: NM_000766
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000330436(uc002opt.3)

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    Additional cDNA sequence: 

    AF209774.1 AY513604.1 AY513605.1 AY513606.1 AY513607.1 AY513608.1 AY513609.1 

    2 DOTS entries:

    DT.102820753  DT.121503364 

    11 AceView cDNA sequences:

    AY513608 AY513609 AY513605 AY513606 NM_000766 AF209774 AY513604 AY513607 
    BM975825 CD609500 CD609501 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CYP2A13 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See CYP2A13 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CYP2A13

    SOURCE GeneReport for Unigene cluster: Hs.567252

    UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696
    Tissue specificity: Expressed in liver and a number of extrahepatic tissues, including nasal mucosa, lung, trachea,
    brain, mammary gland, prostate, testis, and uterus, but not in heart, kidney, bone marrow, colon, small intestine,
    spleen, stomach, thymus, or skeletal muscle

        SABiosciences Expression via Pathway-Focused PCR Array including CYP2A13: 
              Drug Metabolism: Phase I Enzymes in human mouse rat

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for CYP2A13 gene from 3/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 4)
    --
    54(a)
    51(a)
    (see all 4)
    possible ortholog
    possible ortholog
    (see all 4)
    LGf(2965993-2976553)
    LGf(2923593-2936165)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.432 Xenopus laevis mRNA for cytochrome P-450, complete cds less 74.27(n)    D50560.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc558562 hypothetical protein MGC55856 73.45(n)   393204  BC046898.1 


    ENSEMBL Gene Tree for CYP2A13 (if available)
    TreeFam Gene Tree for CYP2A13 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CYP2A13 gene
    CYP2W12  CYP2C82  CYP2F12  CYP2A72  CYP2R12  CYP2J22  CYP2U12  CYP2E12  
    CYP2D62  CYP2B7P12  CYP2A62  CYP2B62  CYP2C192  CYP2S12  CYP2C92  CYP2C182  
    18/25 SIMAP similar genes for CYP2A13 using alignment to 1 protein entry:     CP2AD_HUMAN(see all similar genes):
    CYP2A6    CYP2A6V2    CYP2A7    CYP2B    CYP2B7    CYP2C19
    CYP2F1    CYP2C18    CYP2C8    CYP2C9    CYP 2C    CYP2S1
    CYP2E1    CYP2B6    CYP2J2    CYP2R1    CYP2U1    CYP2D6

    CYP2A13 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    UniProtKB/Swiss-Prot: CP2AD_HUMAN, Q16696
    Polymorphism: The frequencies of the Cys-257 allele in white, black, Hispanic, and Asian individuals are 1.9%, 14.4%,
    5.8%, and 7.7%, respectively. The Cys-257 variant is 37 to 56% less active than the wild-type Arg-257 protein toward
    all substrates tested


    10/326 NCBI SNPs in CYP2A13 are shown (see all 326    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs24537921,2
    C,F,A--38024545(-) GGGCTG/CTGACA 1 -- us2k15Minor allele frequency- C:0.40NA WA 10
    rs24537911,2
    C,F,A,H--38024590(-) AGGGCA/GTAAGG 1 -- us2k14Minor allele frequency- G:0.38NA 8
    rs41081291,2
    --38025241(-) GAACAA/GTCGCA 1 -- us2k10--------
    rs18288101,2
    --38025380(-) GTTCCA/CCTTTC 1 -- us2k10--------
    rs1133047751,2
    --38025767(+) GGCAGC/TGGAGG 1 -- us2k11Minor allele frequency- T:0.50CSA 2
    rs724602361,2
    --38026114(+) CTCCC-/TGTGGA 1 -- us2k10--------
    rs81927821,2
    C--38026236(+) TTGCCC/TGCTCC 1 -- us2k11Minor allele frequency- T:0.00NA 2
    rs777009841,2
    F,--38026419(+) TCAACC/TAAAGT 1 -- us2k11Minor allele frequency- T:0.06NA 120
    rs715793601,2
    --38026546(+) ACTGTA/GATGGT 2 V syn10--------
    rs1120236691,2
    F,--38026755(+) GACCAG/ATGTGG 1 -- int12Minor allele frequency- A:0.50CSA 6

    HapMap Linkage Disequilibrium report for CYP2A13 (41594368 - 41602099 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for CYP2A13: --
    Human Gene Mutation Database (HGMD): CYP2A13

    Locus Specific Mutation Databases (LSDB): CYP2A13

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CYP2A13
    DNA2.0 Custom Variant and Variant Library Synthesis for CYP2A13

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CYP2A13 for disorders           About GeneDecksing

    OMIM gene information: 608055    OMIM disorders: --

    12 diseases for CYP2A13:    About MalaCards
    intermittent claudication    cholesterol    squamous cell carcinoma    lung cancer susceptibility
    pandas    lung cancer    lung adenocarcinoma    leiomyoma
    nasopharyngitis    adenocarcinoma    carcinoma    prostatitis

    2 Novoseek disease relationships for CYP2A13 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    cancer lung 48.4 12 16815959 (3), 14633739 (2), 17671098 (1), 17148654 (1) (see all 8)
    cancer 0 1 14633739 (1)

    Genetic Association Database (GAD): CYP2A13
    Human Genome Epidemiology (HuGE) Navigator: CYP2A13 (20 documents)

    Export disorders for CYP2A13 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CYP2A13 gene, integrated from 9 sources (see all 74):
    (articles sorted by number of sources associating them with CYP2A13)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Genetic polymorphism of the human cytochrome CYP2A13 in a French population: implication in lung cancer susceptibility. (PubMed id 15063809)1, 2, 4, 9 Cauffiez C.... Broly F. (2004)
    2. A genetic polymorphism in coumarin 7-hydroxylation: sequence of the human CYP2A genes and identification of variant CYP2A6 alleles. (PubMed id 7668294)1, 2, 3, 9 Fernandez-Salguero P.... Idle J.R. (1995)
    3. Genetic polymorphisms of the human CYP2A13 gene: identification of single-nucleotide polymorphisms and functional characterization of an Arg257Cys variant. (PubMed id 12130698)1, 2, 4 Zhang X.... Ding X. (2002)
    4. Substantial reduction in risk of lung adenocarcinoma associated with genetic polymorphism in CYP2A13, the most active cytochrome P450 for the metabolic activation of tobacco-specific carcinogen NNK. (PubMed id 14633739)1, 4, 9 Wang H....Lin D. (2003)
    5. Human cytochrome P450 CYP2A13: predominant expression in the respiratory tract and its high efficiency metabolic activation of a tobacco-specific carcinogen, 4-(methylnitrosamino)-1-(3-pyridyl)-1- butanone. (PubMed id 11016631)1, 2, 9 Su T.... Ding X. (2000)
    6. Eighteen novel polymorphisms of the CYP2A13 gene in Japanese. (PubMed id 15618722)1, 2, 9 Fujieda M.... Kamataki T. (2003)
    7. Structure of the human lung cytochrome P450 2A13. (PubMed id 17428784)1, 2, 9 Smith B.D....Scott E.E. (2007)
    8. CYP2A13 genetic polymorphism in French Caucasian, Gabonese and Tunisian populations. (PubMed id 16316926)1, 4, 9 Cauffiez C....Broly F. (2005)
    9. Arg257Cys polymorphism of CYP2A13 in a Chinese population. (PubMed id 15115698)1, 4, 9 Cheng X.Y....Zhou H.H. (2004)
    10. Single nucleotide polymorphisms of the human cyp2a13 gene: evidence for a null allele. (PubMed id 12920161)1, 4, 9 Zhang X....Ding X. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 1553 HGNC: 2608 AceView: CYP2A13 Ensembl:ENSG00000197838 euGenes: HUgn1553
    ECgene: CYP2A13 Kegg: 1553 H-InvDB: CYP2A13

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CYP2A13 Pharmacogenomics, SNPs, Pathways
    Cytochrome P450 Allele Nomenclature Committeehttp://www.cypalleles.ki.se/cyp2a13.htm

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CYP2A13 gene:
    Search GeneIP for patents involving CYP2A13

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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