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Aliases for CYP1B1-AS1 Gene

Subcategory (RNA class) for CYP1B1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CYP1B1-AS1 Gene

  • CYP1B1 Antisense RNA 1 2 3 5
  • CYP1B1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 2 Open Reading Frame 58 2
  • C2orf58 3

External Ids for CYP1B1-AS1 Gene

Previous HGNC Symbols for CYP1B1-AS1 Gene

  • C2orf58

Previous GeneCards Identifiers for CYP1B1-AS1 Gene

  • GC02P038302

Summaries for CYP1B1-AS1 Gene

GeneCards Summary for CYP1B1-AS1 Gene

CYP1B1-AS1 (CYP1B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYP1B1-AS1 Gene

Genomics for CYP1B1-AS1 Gene

Regulatory Elements for CYP1B1-AS1 Gene

Enhancers for CYP1B1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F038260 0.8 Ensembl 17 +187.2 187159 0.5 HDGF CTCF TBL1XR1 EBF1 RAD21 RELA ZFHX2 EGR1 SMC3 CREM CYP1B1-AS1 CYP1B1 ENSG00000229160 ATL2 LOC105374467 LOC102723739
GH02F038095 0.8 FANTOM5 ENCODE 16.7 +23.8 23821 4.5 PKNOX1 FEZF1 GLIS2 KLF7 FOS SP3 TSHZ1 PPARG ZNF518A ZNF623 CYP1B1 CYP1B1-AS1 LINC01883 TTC39DP ENSG00000225284 RPL31P16 SULT6B1 ARHGEF33 RMDN2-AS1 CDC42EP3
GH02F038173 1.4 FANTOM5 Ensembl ENCODE 12.4 +103.4 103442 6.3 PKNOX1 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 FOS CYP1B1 CYP1B1-AS1 ENSG00000273006 GC02M038149
GH02F038189 0.8 FANTOM5 Ensembl ENCODE 12.4 +117.7 117687 2.4 ZNF335 ZNF692 KLF9 NFE2 REST MNT ZBTB17 CYP1B1 CYP1B1-AS1 ENSG00000273006 GC02M038149
GH02F038193 0.7 Ensembl 12.3 +119.9 119854 0.6 ATF1 CREB3L1 NFRKB CEBPG ZNF48 POLR2A TRIM24 L3MBTL2 RNF2 NR4A1 CYP1B1 CYP1B1-AS1 RNU6-951P ENSG00000273006 GC02M038149
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CYP1B1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CYP1B1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000588399 1053 6201 PKNOX1 SIN3A FEZF1 YY1 GLIS2 FOS KLF7 ZNF202 SP3 REST

Genomic Location for CYP1B1-AS1 Gene

Chromosome:
2
Start:
38,073,447 bp from pter
End:
38,231,651 bp from pter
Size:
158,205 bases
Orientation:
Plus strand

Genomic View for CYP1B1-AS1 Gene

Genes around CYP1B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYP1B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYP1B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYP1B1-AS1 Gene

Proteins for CYP1B1-AS1 Gene

Post-translational modifications for CYP1B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYP1B1-AS1 Gene

Domains & Families for CYP1B1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYP1B1-AS1 Gene

Function for CYP1B1-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYP1B1-AS1 Gene

Localization for CYP1B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CYP1B1-AS1 Gene

Pathways & Interactions for CYP1B1-AS1 Gene

SuperPathways for CYP1B1-AS1 Gene

No Data Available

Interacting Proteins for CYP1B1-AS1 Gene

Gene Ontology (GO) - Biological Process for CYP1B1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYP1B1-AS1 Gene

Transcripts for CYP1B1-AS1 Gene

mRNA/cDNA for CYP1B1-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(35) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CYP1B1-AS1 Gene

CYP1B1 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYP1B1-AS1 Gene

No ASD Table

Relevant External Links for CYP1B1-AS1 Gene

GeneLoc Exon Structure for
CYP1B1-AS1
ECgene alternative splicing isoforms for
CYP1B1-AS1

Expression for CYP1B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CYP1B1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CYP1B1-AS1 Gene

This gene is overexpressed in Whole Blood (x9.2).

SOURCE GeneReport for Unigene cluster for CYP1B1-AS1 Gene:

Hs.353894
genes like me logo Genes that share expression patterns with CYP1B1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CYP1B1-AS1 Gene

Orthologs for CYP1B1-AS1 Gene

Evolution for CYP1B1-AS1 Gene

ENSEMBL:
Gene Tree for CYP1B1-AS1 (if available)
TreeFam:
Gene Tree for CYP1B1-AS1 (if available)

No data available for Orthologs for CYP1B1-AS1 Gene

Paralogs for CYP1B1-AS1 Gene

No data available for Paralogs for CYP1B1-AS1 Gene

Variants for CYP1B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CYP1B1-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10165227 -- 38,137,920(+) gtctg(C/T)ccatt intron-variant
rs10171555 -- 38,139,311(+) TTGGT(A/G)AACTG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs10171638 -- 38,139,379(+) TTACC(A/G)TATCA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs10171697 -- 38,139,624(+) GAGTA(C/T)GACAC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs10173894 -- 38,171,132(+) GATGA(C/T)AATGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CYP1B1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6788n54 CNV loss 21841781
esv21528 CNV loss 19812545
esv2245622 CNV deletion 18987734
esv2659660 CNV deletion 23128226
esv2719944 CNV deletion 23290073
nsv2689 CNV insertion 18451855
nsv581476 CNV loss 21841781
nsv581477 CNV loss 21841781
nsv9646 CNV loss 18304495

Relevant External Links for CYP1B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYP1B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CYP1B1-AS1 Gene

Disorders for CYP1B1-AS1 Gene

Relevant External Links for CYP1B1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CYP1B1-AS1

No disorders were found for CYP1B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYP1B1-AS1 Gene

Publications for CYP1B1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for CYP1B1-AS1 Gene

Sources for CYP1B1-AS1 Gene

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