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Aliases for CYMP-AS1 Gene

Subcategory (RNA class) for CYMP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CYMP-AS1 Gene

  • CYMP Antisense RNA 1 2 3 5

External Ids for CYMP-AS1 Gene

Summaries for CYMP-AS1 Gene

GeneCards Summary for CYMP-AS1 Gene

CYMP-AS1 (CYMP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CYMP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYMP-AS1 Gene

Genomics for CYMP-AS1 Gene

Regulatory Elements for CYMP-AS1 Gene

Enhancers for CYMP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H110491 0.5 ENCODE 0.7 -1.0 -956 0 ZFHX2 ATF1 CEBPB CEBPG EGR2 PROK1 KCNA10 KCNC4-AS1 KCNC4 CYMP-AS1 GC01P110517
GH01H110507 0.8 Ensembl ENCODE 0.4 -18.0 -17966 1 MAZ EED EBF1 RUNX3 LAMTOR5-AS1 GC01P110517 CYMP-AS1
GH01H110496 0.8 ENCODE 0.4 -5.9 -5926 0 GTF2F1 CTCF FOXA2 TBL1XR1 ZBTB21 RAD21 CC2D1A FOXK2 ZBTB48 SCRT2 PROK1 KCNA10 UBL4B ENSG00000200536 CYMP-AS1 GC01P110517
GH01H110515 0.5 FANTOM5 0.3 -25.0 -25044 0 ZNF10 ZNF416 STRIP1 GC01P110517 CYMP-AS1
GH01H110510 0.4 FANTOM5 0.3 -20.8 -20760 0 ZSCAN5C ENSG00000235526 LOC105378897 GC01P110517 CYMP-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CYMP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CYMP-AS1 Gene

Chromosome:
1
Start:
110,487,680 bp from pter
End:
110,490,258 bp from pter
Size:
2,579 bases
Orientation:
Minus strand

Genomic View for CYMP-AS1 Gene

Genes around CYMP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYMP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYMP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYMP-AS1 Gene

Proteins for CYMP-AS1 Gene

Post-translational modifications for CYMP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYMP-AS1 Gene

Domains & Families for CYMP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYMP-AS1 Gene

Function for CYMP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYMP-AS1 Gene

Localization for CYMP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYMP-AS1 Gene

Pathways & Interactions for CYMP-AS1 Gene

SuperPathways for CYMP-AS1 Gene

No Data Available

Interacting Proteins for CYMP-AS1 Gene

Gene Ontology (GO) - Biological Process for CYMP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYMP-AS1 Gene

Drugs & Compounds for CYMP-AS1 Gene

No Compound Related Data Available

Transcripts for CYMP-AS1 Gene

mRNA/cDNA for CYMP-AS1 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CYMP-AS1 Gene

No ASD Table

Relevant External Links for CYMP-AS1 Gene

GeneLoc Exon Structure for
CYMP-AS1
ECgene alternative splicing isoforms for
CYMP-AS1

Expression for CYMP-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYMP-AS1 Gene

Orthologs for CYMP-AS1 Gene

Evolution for CYMP-AS1 Gene

ENSEMBL:
Gene Tree for CYMP-AS1 (if available)
TreeFam:
Gene Tree for CYMP-AS1 (if available)

No data available for Orthologs for CYMP-AS1 Gene

Paralogs for CYMP-AS1 Gene

No data available for Paralogs for CYMP-AS1 Gene

Variants for CYMP-AS1 Gene

Sequence variations from dbSNP and Humsavar for CYMP-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000731284 -- 110,487,379(+) CTAAT(A/G)TCACT intron-variant, downstream-variant-500B
rs1000928370 -- 110,490,993(+) GCAAA(C/T)GGGAT intron-variant, upstream-variant-2KB
rs1001532666 -- 110,492,037(+) TTGGG(A/G)AGATC upstream-variant-2KB
rs1001638504 -- 110,488,327(+) CAGGA(A/G)AAAGG intron-variant, nc-transcript-variant
rs1001639905 -- 110,489,311(+) GCCCC(A/G)GGGAA intron-variant, nc-transcript-variant

Relevant External Links for CYMP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYMP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYMP-AS1 Gene

Disorders for CYMP-AS1 Gene

Relevant External Links for CYMP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CYMP-AS1

No disorders were found for CYMP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYMP-AS1 Gene

Publications for CYMP-AS1 Gene

  1. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy RB … Poland GA (Human genetics 2012) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CYMP-AS1 Gene

Sources for CYMP-AS1 Gene

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