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Aliases for CYMP Gene

Aliases for CYMP Gene

  • Chymosin Pseudogene 2 3 5

External Ids for CYMP Gene

Previous GeneCards Identifiers for CYMP Gene

  • GC01U990033
  • GC01P110825
  • GC01P111023
  • GC01P108895

Summaries for CYMP Gene

GeneCards Summary for CYMP Gene

CYMP (Chymosin Pseudogene) is a Pseudogene.

Additional gene information for CYMP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYMP Gene

Genomics for CYMP Gene

Regulatory Elements for CYMP Gene

Enhancers for CYMP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H110476 1.2 Ensembl ENCODE 0.7 -3.0 -3047 1.7 TCF12 GATA2 ATF7 FOS NCOA1 SMARCA4 STAT3 NR2C1 KDM1A WT1 PROK1 KCNA10 KCNC4-AS1 KCNC4 ENSG00000283999 CYMP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CYMP on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYMP Gene

Genomic Locations for CYMP Gene
chr1:110,480,752-110,491,277
(GRCh38/hg38)
Size:
10,526 bases
Orientation:
Plus strand
chr1:111,023,374-111,033,899
(GRCh37/hg19)

Genomic View for CYMP Gene

Genes around CYMP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYMP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYMP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYMP Gene

Function for CYMP Gene

Molecular function for CYMP Gene

GENATLAS Biochemistry:
chymosin,pseudogene

Phenotypes From GWAS Catalog for CYMP Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYMP Gene

Localization for CYMP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYMP Gene

Pathways & Interactions for CYMP Gene

No Data Available

Interacting Proteins for CYMP Gene

Gene Ontology (GO) - Biological Process for CYMP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYMP Gene

Drugs & Compounds for CYMP Gene

No Compound Related Data Available

Transcripts for CYMP Gene

mRNA/cDNA for CYMP Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CYMP Gene

Chymosin pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYMP Gene

No ASD Table

Relevant External Links for CYMP Gene

GeneLoc Exon Structure for
CYMP
ECgene alternative splicing isoforms for
CYMP

Expression for CYMP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYMP Gene

mRNA differential expression in normal tissues according to GTEx for CYMP Gene

This gene is overexpressed in Testis (x12.1) and Stomach (x12.0).

NURSA nuclear receptor signaling pathways regulating expression of CYMP Gene:

CYMP

SOURCE GeneReport for Unigene cluster for CYMP Gene:

Hs.532720
genes like me logo Genes that share expression patterns with CYMP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYMP Gene

Orthologs for CYMP Gene

Evolution for CYMP Gene

ENSEMBL:
Gene Tree for CYMP (if available)
TreeFam:
Gene Tree for CYMP (if available)

No data available for Orthologs for CYMP Gene

Paralogs for CYMP Gene

No data available for Paralogs for CYMP Gene

Variants for CYMP Gene

Sequence variations from dbSNP and Humsavar for CYMP Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000679027 -- 110,481,479(+) GGAGG(A/G)TCCCT intron-variant
rs1000731284 -- 110,487,379(+) CTAAT(A/G)TCACT intron-variant, downstream-variant-500B
rs1000794952 -- 110,482,278(+) GTAGC(A/G)TTTGT intron-variant
rs1000928370 -- 110,490,993(+) GCAAA(C/T)GGGAT intron-variant, upstream-variant-2KB
rs1001029863 -- 110,481,213(+) AGGAG(G/T)TAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CYMP Gene

Variant ID Type Subtype PubMed ID
nsv519826 CNV loss 19592680
nsv1006346 CNV gain 25217958
esv3587166 CNV loss 21293372

Relevant External Links for CYMP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYMP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CYMP Gene

Disorders for CYMP Gene

Relevant External Links for CYMP

Genetic Association Database (GAD)
CYMP
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CYMP

No disorders were found for CYMP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYMP Gene

Publications for CYMP Gene

  1. Assignment of human prochymosin pseudogene to chromosome 1. (PMID: 2071156) Kolmer M … Jänne J (Genomics 1991) 2 3 60
  2. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy RB … Poland GA (Human genetics 2012) 3 60
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  4. Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data. (PMID: 17052657) Fung HC … Singleton A (The Lancet. Neurology 2006) 45 60
  5. Structure and chromosomal localization of the human prochymosin pseudogene. (PMID: 1812698) Ord T … Saarma M (Advances in experimental medicine and biology 1991) 3 60

Products for CYMP Gene

Sources for CYMP Gene

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