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Aliases for CYMP Gene

Aliases for CYMP Gene

  • Chymosin Pseudogene 2 3

External Ids for CYMP Gene

Summaries for CYMP Gene

GeneCards Summary for CYMP Gene

CYMP (Chymosin Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYMP Gene

Genomics for CYMP Gene

Genomic Location for CYMP Gene

Start:
110,480,752 bp from pter
End:
110,491,277 bp from pter
Size:
10,526 bases
Orientation:
Plus strand

Genomic View for CYMP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CYMP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYMP Gene

Regulatory Elements for CYMP Gene

Proteins for CYMP Gene

Post-translational modifications for CYMP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYMP Gene

Domains for CYMP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYMP Gene

Function for CYMP Gene

Molecular function for CYMP Gene

GENATLAS Biochemistry: chymosin,pseudogene

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CYMP Gene

Localization for CYMP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CYMP Gene

Pathways for CYMP Gene

SuperPathways for CYMP Gene

No Data Available

Interacting Proteins for CYMP Gene

Gene Ontology (GO) - Biological Process for CYMP Gene

None

No data available for Pathways by source for CYMP Gene

Transcripts for CYMP Gene

mRNA/cDNA for CYMP Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CYMP Gene

Chymosin pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CYMP Gene

No ASD Table

Relevant External Links for CYMP Gene

GeneLoc Exon Structure for
CYMP
ECgene alternative splicing isoforms for
CYMP

Expression for CYMP Gene

mRNA expression in normal human tissues for CYMP Gene

mRNA differential expression in normal tissues according to GTEx for CYMP Gene

This gene is overexpressed in Testis (12.1) and Stomach (12.0).

SOURCE GeneReport for Unigene cluster for CYMP Gene Hs.532720

genes like me logo Genes that share expressions with CYMP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for CYMP Gene

Orthologs for CYMP Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CYMP Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Cym 16
Species with no ortholog for CYMP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CYMP Gene

ENSEMBL:
Gene Tree for CYMP (if available)
TreeFam:
Gene Tree for CYMP (if available)

Paralogs for CYMP Gene

No data available for Paralogs for CYMP Gene

Variants for CYMP Gene

Sequence variations from dbSNP and Humsavar for CYMP Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs532814 -- 110,484,021(-) GCATC(A/C)CTGTT nc-transcript-variant
rs932210 -- 110,479,832(-) ACAGC(C/G)CCTCA upstream-variant-2KB
rs932211 -- 110,479,717(-) AAAGG(A/C)TGTGG upstream-variant-2KB
rs1339696 -- 110,481,912(-) CCTAT(A/G)GACAG intron-variant
rs1857514 -- 110,484,413(-) ATTAA(C/T)GTGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CYMP Gene

Variant ID Type Subtype PubMed ID
nsv519826 CNV Loss 19592680

Relevant External Links for CYMP Gene

HapMap Linkage Disequilibrium report
CYMP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CYMP Gene

Disorders for CYMP Gene

Relevant External Links for CYMP

Genetic Association Database (GAD)
CYMP
genes like me logo Genes that share disorders with CYMP: view

No data available for UniProtKB/Swiss-Prot for CYMP Gene

Publications for CYMP Gene

  1. Assignment of human prochymosin pseudogene to chromosome 1. (PMID: 2071156) Kolmer M. … JAonne J. (Genomics 1991) 2 3
  2. Structure of the human genomic region homologous to the bovine prochymosin-encoding gene. (PMID: 2210384) Ord T. … Saarma M. (Gene 1990) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy R.B. … Poland G.A. (Hum. Genet. 2012) 3
  5. Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data. (PMID: 17052657) Fung H.C. … Singleton A. (Lancet Neurol 2006) 48

Products for CYMP Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CYMP
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CYMP
    • Block miRNA regulation of CYMP using miScript Target Protectors

    Sources for CYMP Gene

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