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Aliases for CYMP Gene

Aliases for CYMP Gene

  • Chymosin Pseudogene 2 3 5

External Ids for CYMP Gene

Previous GeneCards Identifiers for CYMP Gene

  • GC01U990033
  • GC01P110825
  • GC01P111023
  • GC01P108895

Summaries for CYMP Gene

GeneCards Summary for CYMP Gene

CYMP (Chymosin Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYMP Gene

Genomics for CYMP Gene

Regulatory Elements for CYMP Gene

Enhancers for CYMP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F110476 1.2 Ensembl ENCODE 0.8 -3.3 -3263 2.2 TBP HDAC1 INSM2 KLF17 ZEB1 RFX5 GATA2 ZNF366 FOS SMARCC1 PROK1 KCNA10 KCNC4 KCNC4-AS1 CYMP LOC105378899
GH01F110482 0.8 Ensembl 0.8 +1.9 1949 1.0 HDAC1 ATF1 TBL1XR1 ARNT GATA2 CREM ZBTB11 ZEB2 SMARCA4 KLF16 PROK1 KCNA10 CYMP CYMP-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CYMP on UCSC Golden Path with GeneCards custom track

Genomic Location for CYMP Gene

Chromosome:
1
Start:
110,480,752 bp from pter
End:
110,491,277 bp from pter
Size:
10,526 bases
Orientation:
Plus strand

Genomic View for CYMP Gene

Genes around CYMP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYMP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYMP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYMP Gene

Proteins for CYMP Gene

Post-translational modifications for CYMP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYMP Gene

Domains & Families for CYMP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYMP Gene

Function for CYMP Gene

Molecular function for CYMP Gene

GENATLAS Biochemistry:
chymosin,pseudogene

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYMP Gene

Localization for CYMP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CYMP Gene

Pathways & Interactions for CYMP Gene

No Data Available

Interacting Proteins for CYMP Gene

Gene Ontology (GO) - Biological Process for CYMP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYMP Gene

Transcripts for CYMP Gene

mRNA/cDNA for CYMP Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CYMP Gene

Chymosin pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CYMP Gene

No ASD Table

Relevant External Links for CYMP Gene

GeneLoc Exon Structure for
CYMP
ECgene alternative splicing isoforms for
CYMP

Expression for CYMP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CYMP Gene

mRNA differential expression in normal tissues according to GTEx for CYMP Gene

This gene is overexpressed in Testis (x12.1) and Stomach (x12.0).

NURSA nuclear receptor signaling pathways regulating expression of CYMP Gene:

CYMP

SOURCE GeneReport for Unigene cluster for CYMP Gene:

Hs.532720
genes like me logo Genes that share expression patterns with CYMP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CYMP Gene

Orthologs for CYMP Gene

Evolution for CYMP Gene

ENSEMBL:
Gene Tree for CYMP (if available)
TreeFam:
Gene Tree for CYMP (if available)

No data available for Orthologs for CYMP Gene

Paralogs for CYMP Gene

No data available for Paralogs for CYMP Gene

Variants for CYMP Gene

Sequence variations from dbSNP and Humsavar for CYMP Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10776710 -- 110,485,812(+) TGCTC(G/T)GCTCA intron-variant
rs10776711 -- 110,485,965(+) ATTTT(C/G)AGTGC intron-variant
rs10776712 -- 110,485,966(+) TTTTC(A/G)GTGCA intron-variant
rs10776713 -- 110,486,096(+) CAGGA(C/G)AGGTG intron-variant
rs10857824 -- 110,485,913(+) TGCCC(A/T)GTCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CYMP Gene

Variant ID Type Subtype PubMed ID
esv3587166 CNV loss 21293372
nsv1006346 CNV gain 25217958
nsv519826 CNV loss 19592680

Relevant External Links for CYMP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYMP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CYMP Gene

Disorders for CYMP Gene

Relevant External Links for CYMP

Genetic Association Database (GAD)
CYMP
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CYMP

No disorders were found for CYMP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYMP Gene

Publications for CYMP Gene

  1. Assignment of human prochymosin pseudogene to chromosome 1. (PMID: 2071156) Kolmer M. … JAonne J. (Genomics 1991) 2 3 64
  2. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy R.B. … Poland G.A. (Hum. Genet. 2012) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data. (PMID: 17052657) Fung H.C. … Singleton A. (Lancet Neurol 2006) 46 64
  5. Structure and chromosomal localization of the human prochymosin pseudogene. (PMID: 1812698) Ord T. … Saarma M. (Adv. Exp. Med. Biol. 1991) 3 64

Products for CYMP Gene

Sources for CYMP Gene

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