Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CYFIP2 Gene

protein-coding   GIFtS: 63
GCID: GC05P156674

cytoplasmic FMR1 interacting protein 2

 Explore 3 diseases affiliated with
CYFIP2 via our new
 Human Malady Compendium 
Biological research products
for CYFIP2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Cytoplasmic FMR1 Interacting Protein 21 2
PIR1211 2 3
P53-Inducible Protein 1212 3
Cytoplasmic FMR1-Interacting Protein 22
P53 Inducible Protein2
KIAA11683

External Ids:    HGNC: 137601   Entrez Gene: 269992   Ensembl: ENSG000000551637   OMIM: 6063235   UniProtKB: Q96F073   

Export aliases for CYFIP2 gene to outside databases

Previous GC identifers: GC05P156742 GC05P157244 GC05P156628 GC05P156673 GC05P151780


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: CYFP2_HUMAN, Q96F07
Function: Involved in T-cell adhesion and p53/TP53-dependent induction of apoptosis. Does not bind RNA

Gene Wiki entry for CYFIP2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.1  NT_023133.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CYFIP2 gene promoter:
         SRY   Elk-1   POU6F1 (c2)   MRF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCYFIP2 promoter sequence
   Search SABiosciences Chromatin IP Primers for CYFIP2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CYFIP2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q33.3   Ensembl cytogenetic band:  5q33.3   HGNC cytogenetic band: 5q34

CYFIP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CYFIP2 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P156674:  view genomic region     (about GC identifiers)

Start:
156,693,089 bp from pter      End:
156,822,606 bp from pter
Size:
129,518 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CYFP2_HUMAN, Q96F07 (See protein sequence)
Recommended Name: Cytoplasmic FMR1-interacting protein 2  
Size: 1278 amino acids; 148399 Da
Subunit: Interacts with FMR1, FXR1 AND FXR2. Component of the WAVE1 complex composed of ABI2, CYFIP2, BRK1, NCKAP1 and
WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The
complex can also be activated by NCK1
Subcellular location: Cytoplasm. Cytoplasm, perinuclear region. Cell junction, synapse, synaptosome. Note=Highly
expressed in the perinuclear region. Enriched in synaptosomes. Treatment with leptomycin-B triggers translocation to
the nucleus
Rna editing: Modified_positions=320; Note=Partially edited. Editing appears to be brain-specific
Sequence caution: Sequence=BAA86482.2; Type=Erroneous initiation; Sequence=BAD97324.1; Type=Erroneous initiation;
Secondary accessions: A6NLT2 D3DQJ3 Q53EN5 Q9NTK4 Q9ULQ2 Q9UN29
Alternative splicing: 2 isoforms:  Q96F07-1   Q96F07-2   

Explore the universe of human proteins at neXtProt for CYFIP2: NX_Q96F07

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96F07

  • CYFIP2 Protein expression data from MOPED and PaxDb:    About this image 
    CYFIP2 Protein Expression
    REFSEQ proteins (3 alternative transcripts): 
    NP_001032409.2  NP_001032410.1  NP_055191.2  

    ENSEMBL proteins: 
     ENSP00000429846   ENSP00000429135   ENSP00000428009   ENSP00000427933   ENSP00000428079  
     ENSP00000430904   ENSP00000430930   ENSP00000428520   ENSP00000428022   ENSP00000428645  
     ENSP00000428946   ENSP00000428156   ENSP00000428655   ENSP00000325817   ENSP00000313567  
     ENSP00000366799   ENSP00000444645   ENSP00000403793   ENSP00000390948  
    Reactome Protein details: Q96F07
    Human Recombinant Protein Products for CYFIP2: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: CYFIP2
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for CYFIP2 
    GenScript Custom Purified and Recombinant Proteins Services for CYFIP2
    Novus Biologicals CYFIP2 Proteins
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for CYFIP2

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IDA11438699
    GO:0019717synaptosome ----
    GO:0030054cell junction IEA--
    GO:0043005neuron projection IEA--
    GO:0045202synapse IDA11438699

    CYFIP2 for ontologies           About GeneDecksing



    CYFIP2 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of CYFIP2
    Browse R&D Systems for Antibodies
    OriGene Antibodies: CYFIP2
    OriGene Custom Antibody Services for CYFIP2 
    GenScript Custom Superior Antibodies Services for CYFIP2
    Novus Biologicals CYFIP2 Antibodies
    Abcam antibodies for CYFIP2 
    Uscn Antibodies for CYFIP2
    ThermoFisher Antibody for CYFIP2

    Assay Products for CYFIP2: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for CYFIP2
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for CYFIP2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    CYFIP2 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR008081 Cytoplasmic_FMR1-int
     IPR016536 Cytoplasmic_FMR1-int_sub

    Graphical View of Domain Structure for InterPro Entry Q96F07

    ProtoNet protein and cluster: Q96F07

    1 Blocks protein family: IPB008081 Cytoplasmic fragile X mental retardation protein interacting protein signature

    UniProtKB/Swiss-Prot: CYFP2_HUMAN, Q96F07
    Similarity: Belongs to the CYFIP family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: CYFP2_HUMAN, Q96F07
    Function: Involved in T-cell adhesion and p53/TP53-dependent induction of apoptosis. Does not bind RNA
    Induction: By p53/TP53

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI11438699
         
    CYFIP2 for ontologies           About GeneDecksing


    Phenotypes:
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Cyfip2):
     mortality/aging 

    CYFIP2 for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for CYFIP2 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 3): CYFIP2
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CYFIP2
    8/36 QIAGEN miScript miRNA Assays for microRNAs that regulate CYFIP2 (see all 36):
    hsa-miR-579 hsa-miR-4328 hsa-let-7a-2* hsa-miR-29b-1* hsa-miR-374c hsa-miR-3658 hsa-miR-30b* hsa-miR-30c-2*
    SwitchGear 3'UTR luciferase reporter plasmidCYFIP2 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CYFIP2 (see all 7)
    OriGene shRNA RFP: CYFIP2
    OriGene siRNA: CYFIP2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CYFIP2
    Sirion Biotech Custom design and validation of potent shRNA sequences against CYFIP2 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for CYFIP2
    Sirion Biotech Customized adenovirus for overexpression of CYFIP2 
    Sirion Biotech Customized adenovirus for potent knockdown of CYFIP2

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CYFIP2 (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CYFIP2 (see all 4)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): CYFIP2 (NM_001037333)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CYFIP2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CYFIP2 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for CYFIP2
    Search LifeMap BioReagents cell lines for CYFIP2
    Sirion Biotech Customized stable knockdown cell line services for CYFIP2 
    Sirion Biotech Customized inducible knockdown cell line services for CYFIP2
    Sirion Biotech Customized stable overexpressing cell line services for CYFIP2
    Sirion Biotech Customized inducible overexpressing cell line services for CYFIP2

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CYFIP2


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/8 super-pathways (see all 8About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Regulation of actin dynamics for phagocytic cup formation
    Regulation of actin dynamics for phagocytic cup formation1.00
    Fcgamma receptor (FCGR) dependent phagocytosis0.80
    Role of myosins in phagosome formation0.80
    Branching and elongation of mother and daughter filaments0.29
    2G-protein signaling_RAC1 in cellular process
    G-protein signaling RAC1 in cellular process1.00
    RAC1 signaling pathway0.34
    G-protein signaling_RAC1 in cellular process1.00
    3Immune System
    Immune System1.00
    Innate Immune System0.46
    4Regulation of Actin Cytoskeleton
    Regulation of Actin Cytoskeleton1.00
    Regulation of actin cytoskeleton0.58
    5ErbB1 downstream signaling
    ErbB1 downstream signaling1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for CYFIP2
        G-protein signaling RAC1 in cellular process

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for CYFIP2
        Rac1 Pathway

    1 GeneGo (Thomson Reuters) Pathway for CYFIP2
        G-protein signaling RAC1 in cellular process

    5 BioSystems Pathways for CYFIP2 
        Regulation of Actin Cytoskeleton
    ErbB1 downstream signaling
    RAC1 signaling pathway
    E-cadherin signaling in the nascent adherens junction
    Stabilization and expansion of the E-cadherin adherens junction

    5/6        Reactome Pathways for CYFIP2 (see all 6)
        Role of myosins in phagosome formation
    Branching and elongation of mother and daughter filaments
    Regulation of actin dynamics for phagocytic cup formation
    Fcgamma receptor (FCGR) dependent phagocytosis
    Immune System


    1         Kegg Pathway  (Kegg details for CYFIP2):
        Regulation of actin cytoskeleton


    CYFIP2 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CYFIP2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/51 Interacting proteins for CYFIP2 (Q96F071, 2, 3 ENSP000003909484) via UniProtKB, MINT, STRING, and/or I2D (see all 51)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ABI1Q8IZP02, 3, ENSP000003653124MINT-45982 MINT-45988 I2D: score=4 STRING: ENSP00000365312
    FXR1P511142, 3, ENSP000003501704MINT-16283 I2D: score=5 STRING: ENSP00000350170
    GAS7O608612, 3, ENSP000003226084MINT-72914 I2D: score=4 STRING: ENSP00000322608
    FXR2P511162, 3, ENSP000002501134MINT-17596 I2D: score=3 STRING: ENSP00000250113
    ABI3Q9P2A42, 3, ENSP000002259414MINT-3390361 I2D: score=2 STRING: ENSP00000225941
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006915apoptotic process IDA10449408
    GO:0016337cell-cell adhesion IDA15048733

    CYFIP2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CYFIP2
    Search CenterWatch for drugs/clinical trials and news about CYFIP2 / CYFP2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CYFIP2 gene (3 alternative transcripts): 
    NM_001037332.2  NM_001037333.1  NM_014376.2  

    Unigene Cluster for CYFIP2:

    Cytoplasmic FMR1 interacting protein 2
    Hs.519702  [show with all ESTs]
    Unigene Representative Sequence: NM_001037332
    18/31 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 31):
    ENST00000523969 ENST00000520759 ENST00000522463 ENST00000523119 ENST00000522637
    ENST00000521420 ENST00000519002 ENST00000519252 ENST00000520419 ENST00000522423
    ENST00000519153 ENST00000518456 ENST00000517850 ENST00000517753 ENST00000518511
    ENST00000520942 ENST00000520960 ENST00000518555

    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 3): CYFIP2
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CYFIP2
    8/36 QIAGEN miScript miRNA Assays for microRNAs that regulate CYFIP2 (see all 36):
    hsa-miR-579 hsa-miR-4328 hsa-let-7a-2* hsa-miR-29b-1* hsa-miR-374c hsa-miR-3658 hsa-miR-30b* hsa-miR-30c-2*
    SwitchGear 3'UTR luciferase reporter plasmidCYFIP2 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CYFIP2 (see all 7)
    OriGene shRNA RFP: CYFIP2
    OriGene siRNA: CYFIP2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CYFIP2
    Sirion Biotech Custom design and validation of potent shRNA sequences against CYFIP2 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CYFIP2 (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CYFIP2 (see all 4)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): CYFIP2 (NM_001037333)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CYFIP2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CYFIP2 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CYFIP2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CYFIP2
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CYFIP2
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CYFIP2

    Additional cDNA sequence: 

    AB032994.2 AF132197.1 AF160973.1 AK172724.1 AK223604.1 AK294220.1 AK295865.1 AK297401.1 
    AK303702.1 AK312157.1 AL136549.1 AL161999.1 BC011762.1 BC021008.1 BC026892.2 BC066933.1 
    L47738.1 

    24 DOTS entries:

    DT.91879845  DT.100655783  DT.454661  DT.444880  DT.100655781  DT.100862470  DT.95214650  DT.100738555 
    DT.101955204  DT.100655782  DT.120837307  DT.95262088  DT.95339040  DT.40252820  DT.416237  DT.100655785 
    DT.100803745  DT.120837343  DT.120837362  DT.120837395  DT.86838971  DT.97777401  DT.100722385  DT.97821880 

    24/380 AceView cDNA sequences (see all 380):

    BP361095 BP350074 AI433299 BM457177 BU175638 R54588 AW500843 BQ216347 
    AA682987 AA034345 BQ049658 BM691201 BC021008 AI954773 BE501906 CF143725 
    BU844979 BE396592 BQ721622 BM460242 BP368520 AA309733 BE551722 AW499580 

    GeneLoc Exon Structure

    5/16 Alternative Splicing Database (ASD) splice patterns (SP) for CYFIP2 (see all 16)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b · 11c · 11d ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^
    SP1:                                                  -                                                                                                         
    SP2:              -     -     -                       -                                                                                                     -   
    SP3:                                                  -                                                                                                     -   
    SP4:              -     -     -                       -                                   -                                                                     
    SP5:              -     -     -                 -     -     -     -                                                                                             

    ExUns: 20 ^ 21 ^ 22 ^ 23 ^ 24a · 24b · 24c ^ 25a · 25b ^ 26a · 26b ^ 27 ^ 28 ^ 29a · 29b ^ 30 ^ 31a · 31b ^ 32 ^ 33a · 33b · 33c ^ 34 ^ 35a · 35b · 35c ^
    SP1:        -                 -                                                                       -                 -           -     -           -     -   
    SP2:        -                 -                                                                       -                 -           -     -           -     -   
    SP3:        -                 -                                                                       -                 -           -     -           -     -   
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 36a · 36b ^ 37a · 37b · 37c
    SP1:                              
    SP2:                              
    SP3:                              
    SP4:                              
    SP5:                              


    ECgene alternative splicing isoforms for CYFIP2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CYFIP2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CTGGTTTCTC
    CYFIP2 Expression
    About this image

    CYFIP2 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    3 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    TestisSeminiferous TubulesSertoli cellsTestis
    BoneStylopod Long BoneBone
    Skeletal MuscleExtraocular MusclesSkeletal Muscle
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 7 LifeMap Cells 
    NameCategory
    PureStem™ endothelial progenitor 30-SM2-1 (Embryonic Progenitor Cell)Endothelium
    PureStem™ progenitor E68 (Embryonic Progenitor Cell)
    PureStem™ epithelial progenitor E164 (Embryonic Progenitor Cell)Intermediate Mesoderm, Kidney
    PureStem™ mesenchymal progenitor E15 (Embryonic Progenitor Cell)Adipose, Bone, Cartilage
    PureStem™ progenitor E69 (Embryonic Progenitor Cell)
    PureStem™ progenitor SM22 (Embryonic Progenitor Cell)
    PureStem™ progenitor U31 (Embryonic Progenitor Cell)

    See CYFIP2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CYFIP2

    SOURCE GeneReport for Unigene cluster: Hs.519702

    UniProtKB/Swiss-Prot: CYFP2_HUMAN, Q96F07
    Tissue specificity: Expressed in T-cells. Increased expression is observed in CD4(+) T-lymphocytes from patients with
    multiple sclerosis (at protein level)

        SABiosciences Expression via Pathway-Focused PCR Array including CYFIP2: 
              Cytoskeleton Regulators in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CYFIP2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CYFIP2
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CYFIP2
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CYFIP2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CYFIP2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CYFIP2 gene from 9/25 species (see all 25)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Cyfip21 , 5 cytoplasmic FMR1 interacting protein 21, 5 90.9(n)1
    99.92(a)1
      11 (27.61 cM)5
    768841  NM_001252459.11  NP_001239388.11 
     461938555 
    chicken
    (Gallus gallus)
    Aves CYFIP21 cytoplasmic FMR1 interacting protein 2 86.19(n)
    99.84(a)
      416246  XM_414567.3  XP_414567.2 
    lizard
    (Anolis carolinensis)
    Reptilia CYFIP26
    --
    98(a)
    1 ↔ 1
    GL343205.1(2643426-2699568)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.118842 Xenopus laevis transcribed sequence with strong similarity more 82.72(n)    BJ060443.1 
    zebrafish
    (Danio rerio)
    Actinopterygii cyfip21 cytoplasmic FMR1 interacting protein 2 83.55(n)
    98.24(a)
      100002872  NM_001097587.1  NP_001091056.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Sra-11 , 3 Rho interactor3
    specifically Rac1-associated protein 11
    65(a)3
    65.86(n)1
    67.76(a)1
      88F13
    418611  NM_142190.21  NP_650447.11 
    worm
    (Caenorhabditis elegans)
    Secernentea gex-26
    Cytoplasmic FMR1-interacting protein homolog
    50(a)
    1 → many
    IV(572723-583601)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons PIR1211 protein PIR 44.29(n)
    31.01(a)
      831959  NM_121846.4  NP_197342.3 
    rice
    (Oryza sativa)
    Liliopsida --
    PIR, putative, expressed
    27(a)
    1 → many
    3(2431918-2448211)


    ENSEMBL Gene Tree for CYFIP2 (if available)
    TreeFam Gene Tree for CYFIP2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CYFIP2 gene
    CYFIP12  
    2 SIMAP similar genes for CYFIP2 using alignment to 11 protein entries:     CYFP2_HUMAN (see all proteins):
    DKFZp761H087    CYFIP1

    CYFIP2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2235 NCBI SNPs in CYFIP2 are shown (see all 2235    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1142387181,2
    C,F--156691381(+) TCACAC/TTGAAC 2 -- us2k11Minor allele frequency- T:0.03NA 120
    rs2002424691,2
    --156691401(+) ATGTA-/TGTGTGT 2 -- us2k10--------
    rs1434812261,2
    C--156691409(+) GTGTG-/TATATAT 2 -- us2k10--------
    rs1890583571,2
    C--156691411(+) TGTGTA/GTATAT 2 -- us2k10--------
    rs733021381,2
    C--156691442(+) TTTCCG/AAAATA 2 -- us2k12Minor allele frequency- A:0.03WA 120
    rs1435773201,2
    --156691542(+) GAAAGC/GAAAGG 2 -- us2k10--------
    rs1811500511,2
    --156691627(+) GATTAA/CGTATA 2 -- us2k10--------
    rs1840551451,2
    --156691819(+) TTTGGG/TGCAGC 2 -- us2k10--------
    rs1880468441,2
    --156691887(+) TTCTCC/TTTTTC 2 -- us2k10--------
    rs725453771,2
    C--156691938(+) CTCTCTT/-TCTTT 2 -- us2k11Minor allele frequency- -:0.00CSA 2

    HapMap Linkage Disequilibrium report for CYFIP2 (156693089 - 156822606 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for CYFIP2
         1 CNV: 51598

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CYFIP2
    DNA2.0 Custom Variant and Variant Library Synthesis for CYFIP2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CYFIP2 for disorders           About GeneDecksing

    OMIM gene information: 606323    OMIM disorders: --

    3 diseases for CYFIP2:    About MalaCards
    multiple sclerosis    gout    asthma

    Human Genome Epidemiology (HuGE) Navigator: CYFIP2 (3 documents)

    Export disorders for CYFIP2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CYFIP2 gene, integrated from 9 sources (see all 40):
    (articles sorted by number of sources associating them with CYFIP2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. CYFIP2 is highly abundant in CD4+ cells from multiple sclerosis patients and is involved in T cell adhesion. (PubMed id 15048733)1, 2, 9 Mayne M.... Melanson M. (2004)
    2. CYFIP2, a direct p53 target, is leptomycin-B sensitive. (PubMed id 17245118)1, 2 Jackson R.S. II... Liang P. (2007)
    3. Evolutionarily conserved human targets of adenosine to inosine RNA editing. (PubMed id 15731336)1, 2 Levanon E.Y.... Eisenberg E. (2005)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2 Wiemann S.... Poustka A. (2001)
    6. A highly conserved protein family interacting with the fragile X mental retardation protein (FMRP) and displaying selective interactions with FMRP-related proteins FXR1P and FXR2P. (PubMed id 11438699)1, 3 Schenck A....Mandel J.L. (2001)
    7. Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PubMed id 10574461)1, 2 Hirosawa M.... Ohara O. (1999)
    8. Increased apoptosis induction by 121F mutant p53. (PubMed id 10449408)1, 2 Saller E....Iggo R. (1999)
    9. Evaluation of candidate genes in a genome-wide associ ation study of childhood asthma in Mexicans. (PubMed id 19910030)1, 9 Wu H....London S.J. (2010)
    10. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 26999 HGNC: 13760 AceView: CYFIP2 Ensembl:ENSG00000055163 euGenes: HUgn26999
    ECgene: CYFIP2 Kegg: 26999 H-InvDB: CYFIP2

    (According to HUGE)
    About This Section
    HUGE: KIAA1168

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CYFIP2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CYFIP2 gene:
    Search GeneIP for patents involving CYFIP2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     Browse Small Molecules at EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Kits and Assays available from EMD Millipore
     EMD Millipore Mono- and Polyclonal Antibodies for the study of CYFIP2
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for CYFIP2   OriGene shRNA RFP for CYFIP2  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CYFIP2   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CYFIP2  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for CYFIP2   OriGene 3'-UTR Clone for CYFIP2  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CYFIP2   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CYFIP2  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for CYFIP2   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for CYFIP2   OriGene Custom Protein Services for CYFIP2  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CYFIP2
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CYFIP2
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CYFIP2
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CYFIP2
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CYFIP2
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CYFIP2
     GenScript Custom Purified and Recombinant Proteins Services for CYFIP2 GenScript cDNA clones with any tag delivered in your preferred vector for CYFIP2
     GenScript Custom Assay Services for CYFIP2 GenScript Custom Superior Antibodies Services for CYFIP2
     GenScript Custom overexpressing Cell Line Services for CYFIP2 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in CYFIP2 promoter
     Search Chromatin IP Primers for CYFIP2
     RT2 qPCR Primer Assay in human, mouse, rat CYFIP2
     GNC Network for CYFIP2
     SABiosciences PCR Arrays including human, mouse, rat CYFIP2
     Search Tocris compounds for CYFIP2
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     CYFIP2 antibodies
     CYFIP2 proteins
     Antibodies for CYFIP2
     See all of Abcam's Antibodies, Kits and Proteins for CYFIP2
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     CYFIP2 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for CYFIP2
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CYFIP2
     SwitchGear 3'UTR luciferase reporter plasmids for CYFIP2
     SwitchGear Promoter luciferase reporter plasmids for CYFIP2
     ThermoFisher Antibody for CYFIP2
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CYFIP2
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for CYFIP2
    Sirion Biotech Customized:
     stable knockdown cell line services for CYFIP2
     inducible knockdown cell line services for CYFIP2
     design and validation of potent shRNA sequences against CYFIP2
     adenovirus for potent knockdown of CYFIP2
     adenovirus for overexpression of CYFIP2
     stable overexpressing cell line services for CYFIP2
     inducible overexpressing cell line services for CYFIP2
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      CYFIP2 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4