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Aliases for CYCSP55 Gene

Aliases for CYCSP55 Gene

  • Cytochrome C, Somatic Pseudogene 55 2 3 5
  • Cytochrome C, Somatic-Like 1 (Pseudogene) 2 3
  • Cytochrome C, Somatic-Like 1 2
  • BA513I15.3 3
  • CYCSL1 3
  • HCP15 3
  • HS11 3

External Ids for CYCSP55 Gene

Previous HGNC Symbols for CYCSP55 Gene

  • CYCSL1

Previous GeneCards Identifiers for CYCSP55 Gene

  • GC06P034191
  • GC06P034193
  • GC06P034444
  • GC06P035767
  • GC06P036297
  • GC06P037283
  • GC06P034919
  • GC06P035502
  • GC06P037623
  • GC06P038312
  • GC06P038952
  • GC06P039540
  • GC06P040099

Summaries for CYCSP55 Gene

GeneCards Summary for CYCSP55 Gene

CYCSP55 (Cytochrome C, Somatic Pseudogene 55) is a Pseudogene.

Additional gene information for CYCSP55 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYCSP55 Gene

Genomics for CYCSP55 Gene

GeneHancer (GH) Regulatory Elements for CYCSP55 Gene

Promoters and enhancers for CYCSP55 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I034223 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.1 5065 2.7 HDGF SMAD1 ARNT ARID4B SIN3A YBX1 DMAP1 ZNF2 IRF4 POLR2B RPS10 VPS52 TAF11 DAXX LEMD2 WDR46 ITPR3 RGL2 KIFC1 HCG25
GH06I034226 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +8.9 8871 4.1 BRD4 CTCF HDGF LEF1 NFRKB ETV1 BACH1 IRF3 RARA ETS1 SMIM29 RPS10 PIR48064 CYCSP55 GC06M038609
GH06I034200 Enhancer 1 Ensembl ENCODE 0.4 -18.7 -18673 0.7 HDGF ATF1 NFRKB NFXL1 YY1 CBX5 ZNF143 ZNF263 USF2 REST MLN KRT18P9 CYCSP55
GH06I034195 Enhancer 1.2 Ensembl ENCODE 0.3 -22.8 -22841 1.5 HDGF SMAD1 ARID4B SIN3A DMAP1 ZNF2 ZNF143 SP5 MXD4 REST LEMD2 RPS10 KRT18P9 CYCSP55
GH06I034230 Enhancer 0.7 ENCODE dbSUPER 0.4 +12.0 12000 0.9 SCRT1 BCOR SCRT2 ZMYM3 KDM1A ZNF623 SPI1 PIR48064 SMIM29 GC06M038609 CYCSP55
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYCSP55 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYCSP55 Gene

Genomic Locations for CYCSP55 Gene
chr6:34,219,372-34,220,937
(GRCh38/hg38)
Size:
1,566 bases
Orientation:
Plus strand
chr6:34,187,149-34,188,714
(GRCh37/hg19)

Genomic View for CYCSP55 Gene

Genes around CYCSP55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP55 Gene

Proteins for CYCSP55 Gene

Post-translational modifications for CYCSP55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP55 Gene

Domains & Families for CYCSP55 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYCSP55 Gene

Function for CYCSP55 Gene

Phenotypes From GWAS Catalog for CYCSP55 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP55 Gene

Localization for CYCSP55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYCSP55 Gene

Pathways & Interactions for CYCSP55 Gene

SuperPathways for CYCSP55 Gene

No Data Available

Interacting Proteins for CYCSP55 Gene

Gene Ontology (GO) - Biological Process for CYCSP55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYCSP55 Gene

Drugs & Compounds for CYCSP55 Gene

No Compound Related Data Available

Transcripts for CYCSP55 Gene

mRNA/cDNA for CYCSP55 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP55 Gene

No ASD Table

Relevant External Links for CYCSP55 Gene

GeneLoc Exon Structure for
CYCSP55
ECgene alternative splicing isoforms for
CYCSP55

Expression for CYCSP55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYCSP55 Gene

NURSA nuclear receptor signaling pathways regulating expression of CYCSP55 Gene:

CYCSP55
genes like me logo Genes that share expression patterns with CYCSP55: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP55 Gene

Orthologs for CYCSP55 Gene

Evolution for CYCSP55 Gene

ENSEMBL:
Gene Tree for CYCSP55 (if available)
TreeFam:
Gene Tree for CYCSP55 (if available)

No data available for Orthologs for CYCSP55 Gene

Paralogs for CYCSP55 Gene

No data available for Paralogs for CYCSP55 Gene

Variants for CYCSP55 Gene

Additional Variant Information for CYCSP55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP55 Gene

Disorders for CYCSP55 Gene

No disorders were found for CYCSP55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CYCSP55 Gene

Publications for CYCSP55 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z … Gerstein M (Gene 2003) 2 3 58
  2. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. (PMID: 2849112) Evans MJ … Scarpulla RC (Proceedings of the National Academy of Sciences of the United States of America 1988) 3 58

Products for CYCSP55 Gene

Sources for CYCSP55 Gene

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