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Aliases for CYCSP53 Gene

Subcategory (RNA class) for CYCSP53 Gene

lncRNA

Aliases for CYCSP53 Gene

  • Cytochrome C, Somatic Pseudogene 53 2 3 5
  • HCP3 3

External Ids for CYCSP53 Gene

ORGUL Members for CYCSP53 Gene

Previous GeneCards Identifiers for CYCSP53 Gene

  • GC01M168146
  • GC01M169680
  • GC01M171414

Summaries for CYCSP53 Gene

GeneCards Summary for CYCSP53 Gene

CYCSP53 (Cytochrome C, Somatic Pseudogene 53) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYCSP53 Gene

Genomics for CYCSP53 Gene

Regulatory Elements for CYCSP53 Gene

Enhancers for CYCSP53 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F171440 1 Ensembl ENCODE 0.8 +3.5 3536 1.0 JUN CEBPB EP300 ATF2 GTF3C2 JUND ATF3 POLR3A STAT3 FOS MYOC CYCSP53 GC01M171420
GH01F171437 0.8 FANTOM5 Ensembl ENCODE 0.4 +6.2 6182 2.4 ELK4 JUN MAX USF2 ZBTB40 EP300 JUND MAFF SMC3 RCOR1 PRRC2C FMO4 CYCSP53 GC01M171420
GH01F171434 1.3 FANTOM5 Ensembl ENCODE 0.4 +10.0 9966 2.2 CTCF TAF1 JUN MAX ZIC2 RAD21 GTF3C2 CTBP1 SCRT2 SMC3 PRRC2C FMO4 MIR214 CYCSP53 GC01M171420
GH01F171433 1 Ensembl ENCODE 0.4 +11.3 11265 0.2 JUND PRRC2C GC01M171420 CYCSP53
GH01F171431 0.6 ENCODE 0.4 +12.7 12734 1.1 BCL11A POU5F1 KDM1A PRRC2C FMO4 CYCSP53 GC01M171420
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CYCSP53 on UCSC Golden Path with GeneCards custom track

Genomic Location for CYCSP53 Gene

Chromosome:
1
Start:
171,444,684 bp from pter
End:
171,444,963 bp from pter
Size:
280 bases
Orientation:
Minus strand

Genomic View for CYCSP53 Gene

Genes around CYCSP53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP53 Gene

Proteins for CYCSP53 Gene

Post-translational modifications for CYCSP53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP53 Gene

Domains & Families for CYCSP53 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYCSP53 Gene

Function for CYCSP53 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP53 Gene

Localization for CYCSP53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CYCSP53 Gene

Pathways & Interactions for CYCSP53 Gene

SuperPathways for CYCSP53 Gene

No Data Available

Interacting Proteins for CYCSP53 Gene

Gene Ontology (GO) - Biological Process for CYCSP53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYCSP53 Gene

Transcripts for CYCSP53 Gene

mRNA/cDNA for CYCSP53 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP53 Gene

No ASD Table

Relevant External Links for CYCSP53 Gene

GeneLoc Exon Structure for
CYCSP53
ECgene alternative splicing isoforms for
CYCSP53

Expression for CYCSP53 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CYCSP53 Gene

NURSA nuclear receptor signaling pathways regulating expression of CYCSP53 Gene:

CYCSP53
genes like me logo Genes that share expression patterns with CYCSP53: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CYCSP53 Gene

Orthologs for CYCSP53 Gene

Evolution for CYCSP53 Gene

ENSEMBL:
Gene Tree for CYCSP53 (if available)
TreeFam:
Gene Tree for CYCSP53 (if available)

No data available for Orthologs for CYCSP53 Gene

Paralogs for CYCSP53 Gene

No data available for Paralogs for CYCSP53 Gene

Variants for CYCSP53 Gene

Relevant External Links for CYCSP53 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP53 Gene

Disorders for CYCSP53 Gene

No disorders were found for CYCSP53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CYCSP53 Gene

Publications for CYCSP53 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z. … Gerstein M. (Gene 2003) 2 3 64

Products for CYCSP53 Gene

Sources for CYCSP53 Gene

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