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Aliases for CYCSP40 Gene

Aliases for CYCSP40 Gene

  • Cytochrome C, Somatic Pseudogene 40 2 3 5
  • HCP40 3
  • HC7 3

External Ids for CYCSP40 Gene

Previous GeneCards Identifiers for CYCSP40 Gene

  • GC17M072708
  • GC17M075195

Summaries for CYCSP40 Gene

GeneCards Summary for CYCSP40 Gene

CYCSP40 (Cytochrome C, Somatic Pseudogene 40) is a Pseudogene.

Additional gene information for CYCSP40 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYCSP40 Gene

Genomics for CYCSP40 Gene

Regulatory Elements for CYCSP40 Gene

Enhancers for CYCSP40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H077233 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -35.3 -35292 3 PKNOX1 ARNT SIN3A FEZF1 ZNF2 CBX5 ZNF302 ZNF416 ZNF143 FOS SRSF2 METTL23 ENSG00000267546 SEPT9 TNRC6C PRPSAP1 SNHG20 RNU4-47P ENSG00000267543 MFSD11
GH17H077187 1.3 Ensembl ENCODE dbSUPER 0.4 +10.9 10868 1 PKNOX1 MAX ZNF384 EBF1 BATF RELA EED ATF7 ETV6 RUNX3 RNU4-47P SEC14L1 CYCSP40 GC17M077171
GH17H077204 1.2 ENCODE dbSUPER 0.4 -8.0 -8036 5 ELF3 FOXA2 MLX ARID4B DMAP1 ZSCAN9 RAD21 RARA SLC30A9 ZNF143 SEC14L1 SNHG16 CYCSP40 LACAT1
GH17H077181 1.1 Ensembl ENCODE dbSUPER 0.4 +16.9 16925 2 PRDM6 ZFHX2 EGR1 IKZF1 EED NBN ETV6 EGR2 SPI1 RNU4-47P SEPT9 GC17M077171 CYCSP40
GH17H077180 1.1 ENCODE dbSUPER 0.4 +18.8 18771 1 ELF3 FOXA2 ARID4B DMAP1 RAD21 DNMT3B RARA SLC30A9 RCOR1 MIXL1 SEPT9 RNU4-47P GC17M077171 CYCSP40
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CYCSP40 on UCSC Golden Path with GeneCards custom track

Genomic Location for CYCSP40 Gene

Chromosome:
17
Start:
77,198,950 bp from pter
End:
77,199,543 bp from pter
Size:
594 bases
Orientation:
Minus strand

Genomic View for CYCSP40 Gene

Genes around CYCSP40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP40 Gene

Proteins for CYCSP40 Gene

Post-translational modifications for CYCSP40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP40 Gene

Domains & Families for CYCSP40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYCSP40 Gene

Function for CYCSP40 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CYCSP40
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP40 Gene

Localization for CYCSP40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYCSP40 Gene

Pathways & Interactions for CYCSP40 Gene

SuperPathways for CYCSP40 Gene

No Data Available

Interacting Proteins for CYCSP40 Gene

Gene Ontology (GO) - Biological Process for CYCSP40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYCSP40 Gene

Drugs & Compounds for CYCSP40 Gene

No Compound Related Data Available

Transcripts for CYCSP40 Gene

mRNA/cDNA for CYCSP40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CYCSP40
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP40 Gene

No ASD Table

Relevant External Links for CYCSP40 Gene

GeneLoc Exon Structure for
CYCSP40
ECgene alternative splicing isoforms for
CYCSP40

Expression for CYCSP40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYCSP40 Gene

mRNA differential expression in normal tissues according to GTEx for CYCSP40 Gene

This gene is overexpressed in Whole Blood (x7.6).

NURSA nuclear receptor signaling pathways regulating expression of CYCSP40 Gene:

CYCSP40
genes like me logo Genes that share expression patterns with CYCSP40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP40 Gene

Orthologs for CYCSP40 Gene

Evolution for CYCSP40 Gene

ENSEMBL:
Gene Tree for CYCSP40 (if available)
TreeFam:
Gene Tree for CYCSP40 (if available)

No data available for Orthologs for CYCSP40 Gene

Paralogs for CYCSP40 Gene

No data available for Paralogs for CYCSP40 Gene

Variants for CYCSP40 Gene

Relevant External Links for CYCSP40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP40 Gene

Disorders for CYCSP40 Gene

Relevant External Links for CYCSP40

Genetic Association Database (GAD)
CYCSP40

No disorders were found for CYCSP40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYCSP40 Gene

Publications for CYCSP40 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z … Gerstein M (Gene 2003) 2 3 60
  2. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. (PMID: 2849112) Evans MJ … Scarpulla RC (Proceedings of the National Academy of Sciences of the United States of America 1988) 2 3 60
  3. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. (PMID: 17362836) Schymick JC … Traynor BJ (The Lancet. Neurology 2007) 45 60

Products for CYCSP40 Gene

Sources for CYCSP40 Gene

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