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Aliases for CYCSP20 Gene

Subcategory (RNA class) for CYCSP20 Gene

lncRNA

Aliases for CYCSP20 Gene

  • Cytochrome C, Somatic Pseudogene 20 2 3 5
  • HCP20 3

External Ids for CYCSP20 Gene

ORGUL Members for CYCSP20 Gene

Previous GeneCards Identifiers for CYCSP20 Gene

  • GC07M128352
  • GC07M128544
  • GC07M128759

Summaries for CYCSP20 Gene

GeneCards Summary for CYCSP20 Gene

CYCSP20 (Cytochrome C, Somatic Pseudogene 20) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYCSP20 Gene

Genomics for CYCSP20 Gene

Regulatory Elements for CYCSP20 Gene

Enhancers for CYCSP20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G129122 1.5 FANTOM5 ENCODE dbSUPER 0.7 -5.0 -4999 1.6 TBP PKNOX1 TBL1XR1 WRNIP1 BMI1 YBX1 CBX5 ZNF207 RCOR1 RELB TNPO3 TSPAN33 ENSG00000242162 TPI1P2 ENSG00000243230 AHCYL2 ATP6V1F NRF1 LOC407835 CYCSP20
GH07G129121 1 ENCODE dbSUPER 0.7 -4.1 -4095 0.2 CBX3 MTA2 TAL1 ZEB2 TCF12 ARID1B NFIC NCOR1 ZNF143 HMBOX1 TSPAN33 TPI1P2 TNPO3 ENSG00000242162 ENSG00000243230 AHCYL2 CYCSP20 LOC407835
GH07G129099 1.3 Ensembl ENCODE 0.4 +15.8 15783 4.4 HDGF HNRNPUL1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF766 TSPAN33 TNPO3 ENSG00000242162 TPI1P2 ENSG00000243679 ENSG00000230715 ENSG00000243302 RBM28 ENSG00000242588 FLNC-AS1
GH07G129110 1.2 Ensembl ENCODE dbSUPER 0.4 +7.1 7101 1.1 CBX3 RFX1 RNF2 MAFG RBBP5 TFDP1 POLR2H ZNF316 POLR2A IKZF1 TNPO3 ENSG00000242162 ENSG00000243230 AHCYL2 CYCSP20 ENSG00000241573
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CYCSP20 on UCSC Golden Path with GeneCards custom track

Genomic Location for CYCSP20 Gene

Chromosome:
7
Start:
129,117,513 bp from pter
End:
129,117,827 bp from pter
Size:
315 bases
Orientation:
Minus strand

Genomic View for CYCSP20 Gene

Genes around CYCSP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP20 Gene

Proteins for CYCSP20 Gene

Post-translational modifications for CYCSP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP20 Gene

Domains & Families for CYCSP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYCSP20 Gene

Function for CYCSP20 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP20 Gene

Localization for CYCSP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CYCSP20 Gene

Pathways & Interactions for CYCSP20 Gene

SuperPathways for CYCSP20 Gene

No Data Available

Interacting Proteins for CYCSP20 Gene

Gene Ontology (GO) - Biological Process for CYCSP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYCSP20 Gene

Drugs & Compounds for CYCSP20 Gene

No Compound Related Data Available

Transcripts for CYCSP20 Gene

mRNA/cDNA for CYCSP20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP20 Gene

No ASD Table

Relevant External Links for CYCSP20 Gene

GeneLoc Exon Structure for
CYCSP20
ECgene alternative splicing isoforms for
CYCSP20

Expression for CYCSP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYCSP20 Gene

NURSA nuclear receptor signaling pathways regulating expression of CYCSP20 Gene:

CYCSP20
genes like me logo Genes that share expression patterns with CYCSP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP20 Gene

Orthologs for CYCSP20 Gene

Evolution for CYCSP20 Gene

ENSEMBL:
Gene Tree for CYCSP20 (if available)
TreeFam:
Gene Tree for CYCSP20 (if available)

No data available for Orthologs for CYCSP20 Gene

Paralogs for CYCSP20 Gene

No data available for Paralogs for CYCSP20 Gene

Variants for CYCSP20 Gene

Relevant External Links for CYCSP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP20 Gene

Disorders for CYCSP20 Gene

No disorders were found for CYCSP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CYCSP20 Gene

Publications for CYCSP20 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z. … Gerstein M. (Gene 2003) 2 3 64

Products for CYCSP20 Gene

Sources for CYCSP20 Gene

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