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Aliases for CYB5D1 Gene

Aliases for CYB5D1 Gene

  • Cytochrome B5 Domain Containing 1 2 3

External Ids for CYB5D1 Gene

Summaries for CYB5D1 Gene

GeneCards Summary for CYB5D1 Gene

CYB5D1 (Cytochrome B5 Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include heme binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYB5D1 Gene

Genomics for CYB5D1 Gene

Genomic Location for CYB5D1 Gene

Start:
7,857,746 bp from pter
End:
7,862,447 bp from pter
Size:
4,702 bases
Orientation:
Plus strand

Genomic View for CYB5D1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CYB5D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYB5D1 Gene

Regulatory Elements for CYB5D1 Gene

Proteins for CYB5D1 Gene

  • Protein details for CYB5D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P9G0-CB5D1_HUMAN
    Recommended name:
    Cytochrome b5 domain-containing protein 1
    Protein Accession:
    Q6P9G0
    Secondary Accessions:
    • D3DTQ8
    • Q96DM7

    Protein attributes for CYB5D1 Gene

    Size:
    228 amino acids
    Molecular mass:
    26689 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CYB5D1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CYB5D1 Gene

Proteomics data for CYB5D1 Gene at MOPED

Post-translational modifications for CYB5D1 Gene

No Post-translational modifications

Other Protein References for CYB5D1 Gene

No data available for DME Specific Peptides for CYB5D1 Gene

Domains for CYB5D1 Gene

Protein Domains for CYB5D1 Gene

Blocks:
InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CB5D1_HUMAN
Domain:
  • Contains 1 cytochrome b5 heme-binding domain.:
    • Q6P9G0
Family:
  • Belongs to the cytochrome b5 family.:
    • Q6P9G0
genes like me logo Genes that share domains with CYB5D1: view

No data available for Gene Families for CYB5D1 Gene

Function for CYB5D1 Gene

Gene Ontology (GO) - Molecular Function for CYB5D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0020037 heme binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CYB5D1: view

miRNA for CYB5D1 Gene

miRTarBase miRNAs that target CYB5D1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for CYB5D1 Gene

Localization for CYB5D1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CYB5D1 Gene COMPARTMENTS Subcellular localization image for CYB5D1 gene
Compartment Confidence
cytosol 1
golgi apparatus 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for CYB5D1 Gene

Pathways for CYB5D1 Gene

SuperPathways for CYB5D1 Gene

No Data Available

Interacting Proteins for CYB5D1 Gene

Gene Ontology (GO) - Biological Process for CYB5D1 Gene

None

No data available for Pathways by source for CYB5D1 Gene

Compounds for CYB5D1 Gene

(1) HMDB Compounds for CYB5D1 Gene

Compound Synonyms Cas Number PubMed IDs
Heme
  • (protoporphyrinato)iron
14875-96-8
genes like me logo Genes that share compounds with CYB5D1: view

Transcripts for CYB5D1 Gene

Unigene Clusters for CYB5D1 Gene

Cytochrome b5 domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CYB5D1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d
SP1: - -
SP2: -
SP3: -
SP4: -
SP5: - - - - - -
SP6: -

Relevant External Links for CYB5D1 Gene

GeneLoc Exon Structure for
CYB5D1
ECgene alternative splicing isoforms for
CYB5D1

Expression for CYB5D1 Gene

mRNA expression in normal human tissues for CYB5D1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for CYB5D1 Gene Hs.27475

genes like me logo Genes that share expressions with CYB5D1: view

Orthologs for CYB5D1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CYB5D1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CYB5D1 37
  • 100 (a)
OneToOne
LOC455210 36
  • 99.71 (n)
  • 99.56 (a)
cow
(Bos Taurus)
Mammalia CYB5D1 36
  • 89.04 (n)
  • 87.72 (a)
CYB5D1 37
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CYB5D1 36
  • 88.01 (n)
  • 88.16 (a)
CYB5D1 37
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cyb5d1 36
  • 81.87 (n)
  • 83.33 (a)
Cyb5d1 16
Cyb5d1 37
  • 83 (a)
OneToMany
Gm6685 37
  • 83 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia CYB5D1 37
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CYB5D1 37
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cyb5d1 36
  • 83.77 (n)
  • 84.65 (a)
lizard
(Anolis carolinensis)
Reptilia CYB5D1 37
  • 69 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cyb5d1 36
  • 65.56 (n)
  • 63.98 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.14115 36
zebrafish
(Danio rerio)
Actinopterygii cyb5d1 36
  • 65.41 (n)
  • 68.4 (a)
cyb5d1 37
  • 67 (a)
OneToOne
Dr.17571 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010016 36
  • 44.78 (n)
  • 36.75 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG15429 36
  • 53.4 (n)
  • 39.29 (a)
CG15429 37
  • 34 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 64 (a)
OneToOne
Species with no ortholog for CYB5D1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CYB5D1 Gene

ENSEMBL:
Gene Tree for CYB5D1 (if available)
TreeFam:
Gene Tree for CYB5D1 (if available)

Paralogs for CYB5D1 Gene

No data available for Paralogs for CYB5D1 Gene

Variants for CYB5D1 Gene

Sequence variations from dbSNP and Humsavar for CYB5D1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs10112 -- 7,862,206(-) GTGAA(A/C)AAGAT utr-variant-3-prime
rs3840058 -- 7,860,843(+) TCTCC(-/T)GACCT utr-variant-3-prime
rs8080692 -- 7,861,279(+) TAGGC(A/G)TTTTC utr-variant-3-prime
rs55869181 -- 7,860,322(+) TTTTA(-/A)TTTTT utr-variant-3-prime
rs57736014 -- 7,860,148(+) CCCTC(-/T)TTTTT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CYB5D1 Gene

Variant ID Type Subtype PubMed ID
nsv833351 CNV Loss 17160897
nsv907653 CNV Loss 21882294
dgv510n67 CNV Gain 20364138

Relevant External Links for CYB5D1 Gene

HapMap Linkage Disequilibrium report
CYB5D1

Disorders for CYB5D1 Gene

No disorders were found for CYB5D1 Gene.

No data available for UniProtKB/Swiss-Prot for CYB5D1 Gene

Publications for CYB5D1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for CYB5D1 Gene

Sources for CYB5D1 Gene

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