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Aliases for CXorf49B Gene

Aliases for CXorf49B Gene

  • Chromosome X Open Reading Frame 49B 2 3
  • CXorf49 CXorf49B 4

External Ids for CXorf49B Gene

Previous GeneCards Identifiers for CXorf49B Gene

  • GC0XP070903
  • GC0XP070983

Summaries for CXorf49B Gene

GeneCards Summary for CXorf49B Gene

CXorf49B (Chromosome X Open Reading Frame 49B) is a Protein Coding gene. An important paralog of this gene is CXorf49.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CXorf49B Gene

Genomics for CXorf49B Gene

Regulatory Elements for CXorf49B Gene

Genomic Location for CXorf49B Gene

Start:
71,763,290 bp from pter
End:
71,767,204 bp from pter
Size:
3,915 bases
Orientation:
Plus strand

Genomic View for CXorf49B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CXorf49B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CXorf49B Gene

Proteins for CXorf49B Gene

  • Protein details for CXorf49B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MYA2-CX049_HUMAN
    Recommended name:
    Uncharacterized protein CXorf49
    Protein Accession:
    A8MYA2
    Secondary Accessions:

    Protein attributes for CXorf49B Gene

    Size:
    514 amino acids
    Molecular mass:
    54417 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CXorf49B Gene

Proteomics data for CXorf49B Gene at MOPED

Post-translational modifications for CXorf49B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CXorf49B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CXorf49B Gene

Domains for CXorf49B Gene

Protein Domains for CXorf49B Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CXorf49B: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CXorf49B Gene

Function for CXorf49B Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CXorf49B

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CXorf49B Gene

Localization for CXorf49B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CXorf49B Gene

Pathways for CXorf49B Gene

SuperPathways for CXorf49B Gene

No Data Available

Interacting Proteins for CXorf49B Gene

Gene Ontology (GO) - Biological Process for CXorf49B Gene

None

No data available for Pathways by source for CXorf49B Gene

Transcripts for CXorf49B Gene

mRNA/cDNA for CXorf49B Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CXorf49B Gene

Chromosome X open reading frame 49B:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CXorf49B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CXorf49B Gene

No ASD Table

Relevant External Links for CXorf49B Gene

GeneLoc Exon Structure for
CXorf49B
ECgene alternative splicing isoforms for
CXorf49B

Expression for CXorf49B Gene

mRNA expression in normal human tissues for CXorf49B Gene

Protein differential expression in normal tissues for CXorf49B Gene

This gene is overexpressed in Testis (44.1), Adipocyte (17.4), and Ovary (7.5).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CXorf49B Gene

SOURCE GeneReport for Unigene cluster for CXorf49B Gene Hs.719592

genes like me logo Genes that share expressions with CXorf49B: view

Expression partners for CXorf49B Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CXorf49B Gene

Orthologs for CXorf49B Gene

This gene was present in the common ancestor of mammals.

Orthologs for CXorf49B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MGC152340 35
  • 63.43 (n)
  • 44.55 (a)
dog
(Canis familiaris)
Mammalia LOC607776 35
  • 71.91 (n)
  • 58.17 (a)
mouse
(Mus musculus)
Mammalia LOC102634296 35
  • 55.21 (n)
  • 39.06 (a)
chimpanzee
(Pan troglodytes)
Mammalia LOC737558 35
  • 99.03 (n)
  • 97.86 (a)
rat
(Rattus norvegicus)
Mammalia LOC100361265 35
  • 59.2 (n)
  • 40.8 (a)
Species with no ortholog for CXorf49B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CXorf49B Gene

ENSEMBL:
Gene Tree for CXorf49B (if available)
TreeFam:
Gene Tree for CXorf49B (if available)

Paralogs for CXorf49B Gene

Paralogs for CXorf49B Gene

genes like me logo Genes that share paralogs with CXorf49B: view

Variants for CXorf49B Gene

Sequence variations from dbSNP and Humsavar for CXorf49B Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs56409424 -- 71,762,194(+) GGCCG(A/G)CCTTC upstream-variant-2KB
rs77458208 -- 71,762,176(+) TCGTC(A/G)ACTGG upstream-variant-2KB
rs368446983 -- 71,762,410(+) CAAAC(A/G)GCTAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CXorf49B Gene

Variant ID Type Subtype PubMed ID
esv1584074 OTHER Inversion 17803354
esv33082 CNV Loss 17666407
essv6290 CNV CNV 17122850
dgv2451e1 CNV Complex 17122850
esv2740215 CNV Deletion 23290073
dgv516n21 CNV Loss 19592680
nsv7449 OTHER Inversion 18451855
nsv9952 CNV Loss 18304495
nsv9954 CNV Loss 18304495

Relevant External Links for CXorf49B Gene

HapMap Linkage Disequilibrium report
CXorf49B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CXorf49B Gene

Disorders for CXorf49B Gene

No disorders were found for CXorf49B Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CXorf49B Gene

Publications for CXorf49B Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4

Products for CXorf49B Gene

Sources for CXorf49B Gene

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