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Aliases for CXorf40B Gene

Aliases for CXorf40B Gene

  • Chromosome X Open Reading Frame 40B 2 3

External Ids for CXorf40B Gene

Summaries for CXorf40B Gene

GeneCards Summary for CXorf40B Gene

CXorf40B (Chromosome X Open Reading Frame 40B) is a Protein Coding gene. An important paralog of this gene is CXorf40A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CXorf40B Gene

Genomics for CXorf40B Gene

Genomic Location for CXorf40B Gene

Start:
149,929,527 bp from pter
End:
149,938,850 bp from pter
Size:
9,324 bases
Orientation:
Minus strand

Genomic View for CXorf40B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CXorf40B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CXorf40B Gene

Regulatory Elements for CXorf40B Gene

Proteins for CXorf40B Gene

  • Protein details for CXorf40B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96DE9-CX04B_HUMAN
    Recommended name:
    Protein CXorf40B
    Protein Accession:
    Q96DE9
    Secondary Accessions:

    Protein attributes for CXorf40B Gene

    Size:
    158 amino acids
    Molecular mass:
    17780 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CXorf40B Gene

Proteomics data for CXorf40B Gene at MOPED

Post-translational modifications for CXorf40B Gene

No Post-translational modifications

Other Protein References for CXorf40B Gene

No data available for DME Specific Peptides for CXorf40B Gene

Domains for CXorf40B Gene

Protein Domains for CXorf40B Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with CXorf40B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CXorf40B Gene

Function for CXorf40B Gene

miRNA for CXorf40B Gene

miRTarBase miRNAs that target CXorf40B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for CXorf40B Gene

Localization for CXorf40B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CXorf40B Gene COMPARTMENTS Subcellular localization image for CXorf40B gene
Compartment Confidence
cytosol 3
mitochondrion 2
nucleus 2

No data available for Gene Ontology (GO) - Cellular Components for CXorf40B Gene

Pathways for CXorf40B Gene

SuperPathways for CXorf40B Gene

No Data Available

Interacting Proteins for CXorf40B Gene

Gene Ontology (GO) - Biological Process for CXorf40B Gene

None

No data available for Pathways by source for CXorf40B Gene

Transcripts for CXorf40B Gene

mRNA/cDNA for CXorf40B Gene

(9) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CXorf40B Gene

Chromosome X open reading frame 40B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CXorf40B Gene

No ASD Table

Relevant External Links for CXorf40B Gene

GeneLoc Exon Structure for
CXorf40B
ECgene alternative splicing isoforms for
CXorf40B

Expression for CXorf40B Gene

mRNA expression in normal human tissues for CXorf40B Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for CXorf40B Gene

SOURCE GeneReport for Unigene cluster for CXorf40B Gene Hs.545950

genes like me logo Genes that share expressions with CXorf40B: view

Orthologs for CXorf40B Gene

This gene was present in the common ancestor of chordates.

Orthologs for CXorf40B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 96 (a)
OneToMany
CXHXorf40A 36
  • 98.1 (n)
  • 96.2 (a)
cow
(Bos Taurus)
Mammalia -- 37
  • 60 (a)
ManyToMany
-- 37
  • 63 (a)
ManyToMany
-- 37
  • 75 (a)
ManyToMany
-- 37
  • 52 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 78 (a)
ManyToMany
-- 37
  • 78 (a)
ManyToMany
CXHXorf40A 36
  • 79.96 (n)
  • 77.85 (a)
mouse
(Mus musculus)
Mammalia 1110012L19Rik 36
  • 80.04 (n)
  • 75.8 (a)
1110012L19Rik 37
  • 76 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 67 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 73 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1562747 36
  • 80.89 (n)
  • 78.98 (a)
chicken
(Gallus gallus)
Aves -- 37
  • 63 (a)
OneToMany
LOC772269 36
  • 66.01 (n)
  • 66.01 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 63 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia cxorf40a 36
  • 64.49 (n)
  • 63.4 (a)
zebrafish
(Danio rerio)
Actinopterygii C21HXorf40A 37
  • 52 (a)
OneToMany
zgc:110222 36
  • 56.33 (n)
  • 56.96 (a)
Species with no ortholog for CXorf40B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CXorf40B Gene

ENSEMBL:
Gene Tree for CXorf40B (if available)
TreeFam:
Gene Tree for CXorf40B (if available)

Paralogs for CXorf40B Gene

Paralogs for CXorf40B Gene

Selected SIMAP similar genes for CXorf40B Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with CXorf40B: view

Variants for CXorf40B Gene

Sequence variations from dbSNP and Humsavar for CXorf40B Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs544768 -- 149,934,016(+) GGTCT(C/G)CTGCT utr-variant-5-prime
rs544843 -- 149,934,041(+) ATGTC(C/G)AGCAC utr-variant-5-prime
rs567601 -- 149,934,162(+) GGATA(C/G)CATGT intron-variant
rs626113 -- 149,933,788(-) CGTCC(C/T)CTGCT synonymous-codon, reference
rs5987377 -- 149,933,773(+) TTCCG(C/T)TGGCT synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for CXorf40B Gene

Variant ID Type Subtype PubMed ID
nsv525908 CNV Gain 19592680
nsv9996 CNV Gain 18304495

Relevant External Links for CXorf40B Gene

HapMap Linkage Disequilibrium report
CXorf40B

Disorders for CXorf40B Gene

Relevant External Links for CXorf40B

Genetic Association Database (GAD)
CXorf40B
genes like me logo Genes that share disorders with CXorf40B: view

No data available for UniProtKB/Swiss-Prot for CXorf40B Gene

Publications for CXorf40B Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  3. 130 kb of DNA sequence reveals two new genes and a regional duplication distal to the human iduronate-2-sulfate sulfatase locus. (PMID: 8717057) Timms K.M. … Gibbs R.A. (Genome Res. 1995) 3 4
  4. Molecular and phenotypic variation in patients with severe Hunter syndrome. (PMID: 9147653) Timms K.M. … Gibbs R.A. (Hum. Mol. Genet. 1997) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CXorf40B Gene

Sources for CXorf40B Gene

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