Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CXXC5-AS1 Gene

Subcategory (RNA class) for CXXC5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CXXC5-AS1 Gene

  • CXXC5 Antisense RNA 1 2 3 5

External Ids for CXXC5-AS1 Gene

Summaries for CXXC5-AS1 Gene

GeneCards Summary for CXXC5-AS1 Gene

CXXC5-AS1 (CXXC5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CXXC5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CXXC5-AS1 Gene

Genomics for CXXC5-AS1 Gene

GeneHancer (GH) Regulatory Elements for CXXC5-AS1 Gene

Promoters and enhancers for CXXC5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I139633 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 -3.6 -3638 40.3 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 CXXC5 ANKHD1 TMCO6 IK TMEM173 LOC101929719 APBB3 PSD2 DNAJC18 LOC105379194
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CXXC5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CXXC5-AS1 Gene

Genomic Locations for CXXC5-AS1 Gene
chr5:139,648,999-139,649,728
(GRCh38/hg38)
Size:
730 bases
Orientation:
Minus strand
chr5:139,028,584-139,029,313
(GRCh37/hg19)

Genomic View for CXXC5-AS1 Gene

Genes around CXXC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CXXC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CXXC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CXXC5-AS1 Gene

Proteins for CXXC5-AS1 Gene

Post-translational modifications for CXXC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CXXC5-AS1 Gene

Domains & Families for CXXC5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CXXC5-AS1 Gene

Function for CXXC5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CXXC5-AS1 Gene

Localization for CXXC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CXXC5-AS1 Gene

Pathways & Interactions for CXXC5-AS1 Gene

SuperPathways for CXXC5-AS1 Gene

No Data Available

Interacting Proteins for CXXC5-AS1 Gene

Gene Ontology (GO) - Biological Process for CXXC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CXXC5-AS1 Gene

Drugs & Compounds for CXXC5-AS1 Gene

No Compound Related Data Available

Transcripts for CXXC5-AS1 Gene

mRNA/cDNA for CXXC5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CXXC5-AS1 Gene

No ASD Table

Relevant External Links for CXXC5-AS1 Gene

GeneLoc Exon Structure for
CXXC5-AS1
ECgene alternative splicing isoforms for
CXXC5-AS1

Expression for CXXC5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CXXC5-AS1 Gene

Orthologs for CXXC5-AS1 Gene

Evolution for CXXC5-AS1 Gene

ENSEMBL:
Gene Tree for CXXC5-AS1 (if available)
TreeFam:
Gene Tree for CXXC5-AS1 (if available)

No data available for Orthologs for CXXC5-AS1 Gene

Paralogs for CXXC5-AS1 Gene

No data available for Paralogs for CXXC5-AS1 Gene

Variants for CXXC5-AS1 Gene

Additional Variant Information for CXXC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CXXC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CXXC5-AS1 Gene

Disorders for CXXC5-AS1 Gene

No disorders were found for CXXC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CXXC5-AS1 Gene

Publications for CXXC5-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CXXC5-AS1 Gene

Sources for CXXC5-AS1 Gene

Content
Loading form....