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Aliases for CXXC4-AS1 Gene

Subcategory (RNA class) for CXXC4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CXXC4-AS1 Gene

  • CXXC4 Antisense RNA 1 2 3 5

External Ids for CXXC4-AS1 Gene

Summaries for CXXC4-AS1 Gene

GeneCards Summary for CXXC4-AS1 Gene

CXXC4-AS1 (CXXC4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CXXC4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CXXC4-AS1 Gene

Genomics for CXXC4-AS1 Gene

Regulatory Elements for CXXC4-AS1 Gene

Enhancers for CXXC4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H104486 1.3 ENCODE dbSUPER 0.7 +0.6 551 9 HDGF PKNOX1 ATF1 FOXA2 SIN3A FEZF1 YY1 GLIS2 ZNF143 ZNF207 CXXC4 CXXC4-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CXXC4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CXXC4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000171402 535 2201 HDGF PKNOX1 ATF1 SIN3A FEZF1 GLIS2 ZNF143 ZNF207 ATF7 RUNX3

Genomic Location for CXXC4-AS1 Gene

Chromosome:
4
Start:
104,490,965 bp from pter
End:
104,697,592 bp from pter
Size:
206,628 bases
Orientation:
Plus strand

Genomic View for CXXC4-AS1 Gene

Genes around CXXC4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CXXC4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CXXC4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CXXC4-AS1 Gene

Proteins for CXXC4-AS1 Gene

Post-translational modifications for CXXC4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CXXC4-AS1 Gene

Domains & Families for CXXC4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CXXC4-AS1 Gene

Function for CXXC4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CXXC4-AS1 Gene

Localization for CXXC4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CXXC4-AS1 Gene

Pathways & Interactions for CXXC4-AS1 Gene

SuperPathways for CXXC4-AS1 Gene

No Data Available

Interacting Proteins for CXXC4-AS1 Gene

Gene Ontology (GO) - Biological Process for CXXC4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CXXC4-AS1 Gene

Drugs & Compounds for CXXC4-AS1 Gene

No Compound Related Data Available

Transcripts for CXXC4-AS1 Gene

mRNA/cDNA for CXXC4-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CXXC4-AS1 Gene

No ASD Table

Relevant External Links for CXXC4-AS1 Gene

GeneLoc Exon Structure for
CXXC4-AS1
ECgene alternative splicing isoforms for
CXXC4-AS1

Expression for CXXC4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CXXC4-AS1 Gene

Orthologs for CXXC4-AS1 Gene

Evolution for CXXC4-AS1 Gene

ENSEMBL:
Gene Tree for CXXC4-AS1 (if available)
TreeFam:
Gene Tree for CXXC4-AS1 (if available)

No data available for Orthologs for CXXC4-AS1 Gene

Paralogs for CXXC4-AS1 Gene

No data available for Paralogs for CXXC4-AS1 Gene

Variants for CXXC4-AS1 Gene

Sequence variations from dbSNP and Humsavar for CXXC4-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000004041 -- 104,575,447(+) CACTT(G/T)TCCTA intron-variant
rs1000039374 -- 104,533,752(+) TATGG(A/G)CGTGA intron-variant
rs1000060029 -- 104,566,570(+) TTATG(A/T)AGCTT intron-variant
rs1000065248 -- 104,603,598(+) TTTCA(A/G)TATTT intron-variant
rs1000080911 -- 104,624,701(+) AACTC(A/G)CAGCT intron-variant

Relevant External Links for CXXC4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CXXC4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CXXC4-AS1 Gene

Disorders for CXXC4-AS1 Gene

Relevant External Links for CXXC4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CXXC4-AS1

No disorders were found for CXXC4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CXXC4-AS1 Gene

Publications for CXXC4-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for CXXC4-AS1 Gene

Sources for CXXC4-AS1 Gene

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