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Aliases for CXCR6 Gene

Aliases for CXCR6 Gene

  • Chemokine (C-X-C Motif) Receptor 6 2 3
  • STRL33 3 4 6
  • BONZO 3 4 6
  • G-Protein Coupled Receptor STRL33 3 4
  • G-Protein Coupled Receptor Bonzo 3 4
  • CDw186 3 4
  • CXC-R6 3 4
  • CXCR-6 3 4
  • TYMSTR 3 4
  • C-X-C Chemokine Receptor Type 6 3
  • G Protein-Coupled Receptor 3
  • CD186 Antigen 4
  • CD186 3

External Ids for CXCR6 Gene

Summaries for CXCR6 Gene

GeneCards Summary for CXCR6 Gene

CXCR6 (Chemokine (C-X-C Motif) Receptor 6) is a Protein Coding gene. Diseases associated with CXCR6 include hiv-1. Among its related pathways are Signaling by GPCR and Akt Signaling. GO annotations related to this gene include G-protein coupled receptor activity and C-C chemokine receptor activity. An important paralog of this gene is CCR7.

UniProtKB/Swiss-Prot for CXCR6 Gene

  • Receptor for the C-X-C chemokine CXCL16. Used as a coreceptor by SIVs and by strains of HIV-2 and m-tropic HIV-1

Gene Wiki entry for CXCR6 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CXCR6 Gene

Genomics for CXCR6 Gene

Genomic Location for CXCR6 Gene

Start:
45,940,933 bp from pter
End:
45,948,353 bp from pter
Size:
7,421 bases
Orientation:
Plus strand

Genomic View for CXCR6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CXCR6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CXCR6 Gene

Regulatory Elements for CXCR6 Gene

Proteins for CXCR6 Gene

  • Protein details for CXCR6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00574-CXCR6_HUMAN
    Recommended name:
    C-X-C chemokine receptor type 6
    Protein Accession:
    O00574
    Secondary Accessions:
    • O00575
    • Q9HCA5

    Protein attributes for CXCR6 Gene

    Size:
    342 amino acids
    Molecular mass:
    39280 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CXCR6 Gene

Proteomics data for CXCR6 Gene at MOPED

Post-translational modifications for CXCR6 Gene

Other Protein References for CXCR6 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for CXCR6 Gene

Domains for CXCR6 Gene

Gene Families for CXCR6 Gene

HGNC:
  • CD :CD molecules
  • CXCR :GPCR / Class A : Chemokine receptors : C-X-C motif
IUPHAR :

UniProtKB/Swiss-Prot:

CXCR6_HUMAN
Family:
  • Belongs to the G-protein coupled receptor 1 family.:
    • O00574
genes like me logo Genes that share domains with CXCR6: view

Function for CXCR6 Gene

Molecular function for CXCR6 Gene

UniProtKB/Swiss-Prot Function: Receptor for the C-X-C chemokine CXCL16. Used as a coreceptor by SIVs and by strains of HIV-2 and m-tropic HIV-1

Gene Ontology (GO) - Molecular Function for CXCR6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity TAS 9166430
GO:0015026 coreceptor activity IEA --
GO:0016494 C-X-C chemokine receptor activity IEA --
genes like me logo Genes that share ontologies with CXCR6: view
genes like me logo Genes that share phenotypes with CXCR6: view

Animal Models for CXCR6 Gene

MGI Knock Outs for CXCR6:

miRNA for CXCR6 Gene

miRTarBase miRNAs that target CXCR6

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for CXCR6 Gene

Localization for CXCR6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CXCR6 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CXCR6 Gene COMPARTMENTS Subcellular localization image for CXCR6 gene
Compartment Confidence
plasma membrane 5
extracellular 1

Gene Ontology (GO) - Cellular Components for CXCR6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane TAS 9166430
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with CXCR6: view

Pathways for CXCR6 Gene

genes like me logo Genes that share pathways with CXCR6: view

Gene Ontology (GO) - Biological Process for CXCR6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006935 chemotaxis IEA --
GO:0006954 inflammatory response IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0019079 viral genome replication TAS 9230441
GO:0070098 chemokine-mediated signaling pathway IEA --
genes like me logo Genes that share ontologies with CXCR6: view

Compounds for CXCR6 Gene

(2) IUPHAR Ligand for CXCR6 Gene

Ligand Type Action Affinity Pubmed IDs
CXCL16 Agonist Full agonist 9
[125I]CXCL16 Agonist Full agonist

(3) Novoseek inferred chemical compound relationships for CXCR6 Gene

Compound -log(P) Hits PubMed IDs
rantes 45.1 3
ionomycin 18.1 2
calcium 0 1
genes like me logo Genes that share compounds with CXCR6: view

Transcripts for CXCR6 Gene

Unigene Clusters for CXCR6 Gene

Chemokine (C-X-C motif) receptor 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CXCR6 Gene

No ASD Table

Relevant External Links for CXCR6 Gene

GeneLoc Exon Structure for
CXCR6
ECgene alternative splicing isoforms for
CXCR6

Expression for CXCR6 Gene

mRNA expression in normal human tissues for CXCR6 Gene

mRNA differential expression in normal tissues according to GTEx for CXCR6 Gene

This gene is overexpressed in Spleen (8.9), Muscle - Skeletal (5.6), Whole Blood (5.3), and Small Intestine - Terminal Ileum (4.4).

SOURCE GeneReport for Unigene cluster for CXCR6 Gene Hs.34526

mRNA Expression by UniProt/SwissProt for CXCR6 Gene

O00574-CXCR6_HUMAN
Tissue specificity: Expressed in lymphoid tissues and activated T cells
genes like me logo Genes that share expressions with CXCR6: view

Orthologs for CXCR6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CXCR6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CXCR6 36
  • 99.81 (n)
  • 99.42 (a)
CXCR6 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CXCR6 36
  • 82.25 (n)
  • 79.71 (a)
CXCR6 37
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CXCR6 36
  • 84.75 (n)
  • 81.82 (a)
CXCR6 37
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cxcr6 36
  • 79.18 (n)
  • 75.66 (a)
Cxcr6 16
Cxcr6 37
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CXCR6 37
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CXCR6 37
  • 53 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cxcr6 36
  • 78.04 (n)
  • 73.82 (a)
lizard
(Anolis carolinensis)
Reptilia CXCR6 37
  • 47 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cxcr6 36
  • 55.63 (n)
  • 46.37 (a)
Species with no ortholog for CXCR6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CXCR6 Gene

ENSEMBL:
Gene Tree for CXCR6 (if available)
TreeFam:
Gene Tree for CXCR6 (if available)

Paralogs for CXCR6 Gene

genes like me logo Genes that share paralogs with CXCR6: view

Variants for CXCR6 Gene

Sequence variations from dbSNP and Humsavar for CXCR6 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
VAR_003506 -
VAR_024253 -

Structural Variations from Database of Genomic Variants (DGV) for CXCR6 Gene

Variant ID Type Subtype PubMed ID
nsv876734 CNV Gain 21882294
nsv834678 CNV Gain 17160897
nsv876736 CNV Gain 21882294

Relevant External Links for CXCR6 Gene

HapMap Linkage Disequilibrium report
CXCR6

Disorders for CXCR6 Gene

(1) MalaCards Diseases for CXCR6 Gene

Search for CXCR6 Gene in MalaCards »

(12) Novoseek inferred disease relationships for CXCR6 Gene

Disease -log(P) Hits PubMed IDs
immunodeficiency 51.1 6
necrosis 22.9 2
sarcoidosis 20 5
atherosclerosis 19.4 1
inflammation 17.7 2

Relevant External Links for CXCR6

Genetic Association Database (GAD)
CXCR6
Human Genome Epidemiology (HuGE) Navigator
CXCR6
genes like me logo Genes that share disorders with CXCR6: view

No data available for UniProtKB/Swiss-Prot for CXCR6 Gene

Publications for CXCR6 Gene

  1. STRL33, A novel chemokine receptor-like protein, functions as a fusion cofactor for both macrophage-tropic and T cell line-tropic HIV- 1. (PMID: 9166430) Liao F. … Farber J.M. (J. Exp. Med. 1997) 2 3 4 23
  2. TYMSTR, a putative chemokine receptor selectively expressed in activated T cells, exhibits HIV-1 coreceptor function. (PMID: 9285716) Loetscher M. … Moser B. (Curr. Biol. 1997) 3 4 23
  3. Expression cloning of new receptors used by simian and human immunodeficiency viruses. (PMID: 9230441) Deng H.K. … Littman D.R. (Nature 1997) 2 3 4
  4. Chemokine C-X-C motif receptor 6 contributes to cell migration during hypoxia. (PMID: 19231068) Lin S. … Zhang L. (Cancer Lett. 2009) 3 23
  5. The chemokine CXCL16 and its receptor, CXCR6, as markers and promoters of inflammation-associated cancers. (PMID: 19690611) Darash-Yahana M. … Farber J.M. (PLoS ONE 2009) 3 23

Products for CXCR6 Gene

Sources for CXCR6 Gene

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