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Aliases & Descriptions for CXCR3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CD182 2 , 5 CD183 1 , 2 CKR-L2 1 , 2 , 3 CMKAR3 1 , 2 CXC-R3 3 CXCR-3 3 GPR9 2 , 3 , 5 IP10-R 1 , 2 Mig-R 2 MigR 1 , 2 OTTHUMP00000070257 2
Descriptions CD183 antigen 3 G protein-coupled receptor 9 1 , 2 , 3 IP-10 receptor 3 IP10 receptor 2 Interferon-inducible protein 10 receptor 3 Mig receptor 2 chemokine (C-X-C motif) receptor 3 2 chemokine (C-X-C) receptor 3 2
Search outside databases for aliases for CXCR3 genePrevious GC identifers: GC0XM067009 GC0XM068313 GC0XM069068 GC0XM069702 GC0XM070618
Summaries for CXCR3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CXCR3 : This gene encodes a G protein-coupled receptor with selectivity for three chemokines, termed IP10(interferon-g-inducible 10 kDa protein), Mig (monokine induced by interferon-g) and I-TAC(interferon-inducible T cell a-chemoattractant). IP10, Mig and I-TAC belong to the structuralsubfamily of CXC chemokines, in which a single amino acid residue separates the first two of fourhighly conserved Cys residues. Binding of chemokines to this protein induces cellular responsesthat are involved in leukocyte traffic, most notably integrin activation, cytoskeletal changes andchemotactic migration. Inhibition by Bordetella pertussis toxin suggests that heterotrimeric Gprotein of the Gi-subclass couple to this protein. Signal transduction has not been furtheranalyzed but may include the same enzymes that were identified in the signaling cascade induced byother chemokine receptors. As a consequence of chemokine-induced cellular desensitization(phosphorylation-dependent receptor internalization), cellular responses are typically rapid andshort in duration. Cellular responsiveness is restored after dephosphorylation of intracellularreceptors and subsequent recycling to the cell surface. This gene is prominently expressed in invitro cultured effector/memory T cells, and in T cells present in many types of inflamed tissues.In addition, IP10, Mig and I-TAC are commonly produced by local cells in inflammatory lesion,suggesting that this gene and its chemokines participate in the recruitment of inflammatory cells.Therefore, this protein is a target for the development of small molecular weight antagonists,which may be used in the treatment of diverse inflammatory diseases. Multiple transcript variantsencoding different isoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: CXCR3_HUMAN, P49682 Function : Receptor for CXCL9, CXCL10 and CXCL11 and mediates the proliferation of human mesangialcells (HMC). Isoform 2 is a receptor for CXCL4 and also mediates the inhibitory activities ofCXCL9, CXCL10 and CXCL11 on the growth of human microvascular endothelial cells (HMVEC). Isoform 2may play a role in angiogenesis. Isoform 3 mediates activity of CXCL11
Gene Wiki entry for CXCR3
Genomic Location for CXCR3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CXCR3 gene Entrez Gene cytogenetic band: Xq13 Ensembl cytogenetic band: Xq13.1 HGNC cytogenetic band: Xq13 CXCR3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XM070752:
(about GC identifiers )
Start:
70,752,491 bp from pter
End:
70,755,092 bp from pter
Size:
2,602 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000023.9 NT_011669.16 Proteins for CXCR3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CXCR3_HUMAN, P49682 (See
protein sequence )Recommended Name: C-X-C chemokine receptor type 3 Size : 368 amino acids; 40660 Da
Subcellular location : Cell membrane; Multi-pass membrane protein
Secondary accessions : O15185 Q7Z710 Q9P2T4 Q9P2T5Alternative splicing : 3 isoforms : P49682-1 P49682-2 P49682-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001136269.1 NP_001495.1 ENSEMBL proteins: ENSP00000362791 ENSP00000362797 ENSP00000362795 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CXCR3: Assays for CXCR3:
Protein
Domains/ Families for CXCR3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P49682 ProtoNet protein and cluster: P49682
2 Blocks protein families : IPB000355 Chemokine receptor signature IPB004070 C-X-C chemokine receptor type 3 signature UniProtKB/Swiss-Prot: CXCR3_HUMAN, P49682 Similarity : Belongs to the G-protein coupled receptor 1 family
Gene Function for CXCR3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001142797 Applied Biosystems Silencer ® siRNAs for CXCR3 Sigma-Aldrich siRNA and siRNA Panels for CXCR3 Sigma-Aldrich shRNA Panels and shRNA for CXCR3 Explore Sigma-Aldrich super-pooled esiRNAs Clones: Invitrogen Clones for CXCR3 Millipore Clones for the Expression of CXCR3
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001142797                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001142797                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001142797  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001142797 UniProtKB/Swiss-Prot: CXCR3_HUMAN, P49682 Function : Receptor for CXCL9, CXCL10 and CXCL11 and mediates the proliferation of human mesangialcells (HMC). Isoform 2 is a receptor for CXCL4 and also mediates the inhibitory activities ofCXCL9, CXCL10 and CXCL11 on the growth of human microvascular endothelial cells (HMVEC). Isoform 2may play a role in angiogenesis. Isoform 3 mediates activity of CXCL11
Genatlas biochemistry entry for CXCR3 :chemokine receptor 3 for the interferon gamma inducible proteins INP10,MIG mediating a rapidinduction of effector in T lymphocytes,G protein coupled receptor superfamily
6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Cxcr3) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004872 receptor activity
IEA -- GO:0004930 G-protein coupled receptor activity
IEA -- GO:0016493 C-C chemokine receptor activity
IEA -- GO:0016494 C-X-C chemokine receptor activity
IEA --
About this table
Pathways & Interactions for CXCR3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for CXCR3 5/78 Interacting proteins for CXCR3 (ENSP00000362795 3 ) via UniProtKB, MINT, and/or STRING (see all 78
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
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Drugs & Compounds for CXCR3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for CXCR3 available from Tocris Bioscience 10/31 Novoseek chemical compound relationships for CXCR3 gene (see all 31
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tarc
90.82
50
18276722 (4), 11920617 (3), 12911508 (2), 15944327 (2) (see all 33 )
rantes
89.07
149
9856808 (3), 7531729 (3), 16239601 (3), 15126779 (3) (see all 99 )
ccl3
79.66
7
15848520 (1), 17640964 (1), 12960247 (1), 15591886 (1) (see all 6 )
mcp 1
57.63
2
11683586 (1), 17993576 (1)
groalpha
55.10
3
15044249 (2), 11422029 (1)
ccl4
53.60
8
19265171 (1), 15848520 (1), 12960247 (1), 15591886 (1) (see all 6 )
larc
42.78
2
10934220 (1)
dimethyl fumarate
42.53
3
15663561 (1), 11422029 (1)
ifn-alpha
25.38
2
15880822 (1), 16571725 (1)
il 10
15.38
2
16219708 (1), 15833361 (1)
About this table
Transcripts for CXCR3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001142797 Sigma-Aldrich siRNA and siRNA Panels for CXCR3 Sigma-Aldrich shRNA Panels and shRNA for CXCR3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001142797 NM_001504
REFSEQ mRNAs for CXCR3 gene (2 alternative transcripts): NM_001142797.1 NM_001504.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001142797 NM_001504
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001142797                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001142797                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001142797  
Additional cDNA sequence: AF469635.1 AK313679.1 AY242128.1 BC034403.1 X95876.1
3 DOTS entries : DT.75149539 DT.100746773 DT.100746772
15 AceView cDNA sequences :BC034403 X95876 AJ346279 AJ573366 NM_001504 AF469635 BP340425 BI768435 AY242128 BQ053710 BI911171 BI821147 BQ052726 CD246172 AI587350
highest scoring ESTs for CXCR3 :X95876 AF469635 AY242128 BC034403 BI768435 BI821147 BI911171 AJ346279 AJ573366 BP340425
Unigene Cluster for CXCR3: Chemokine (C-X-C motif) receptor 3 Hs.198252 [show with all ESTs ] Unigene Representative Sequence: NM_001142797 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000373687
ENST00000373693
ENST00000373691
Expression for CXCR3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CXCR3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CXCR3 1 / 2 / 3
5 probe-sets matching CXCR3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTCCCCAAGASOURCE GeneReport for Unigene cluster: Hs.198252 Expression variation in blood from EXPOLDB for CXCR3
UniProtKB/Swiss-Prot: CXCR3_HUMAN, P49682 Tissue specificity : Isoform 1 and isoform 2 are mainly expressed in heart, kidney, liver andskeletal muscle. Isoform 1 is also expressed in placenta
Orthologs for CXCR3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CXCR3 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for CXCR3 ENSEMBL Gene Tree for CXCR3 Paralogs for CXCR3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CXCR3 gene CXCR5 2 IL8RA 2 IL8RB 2 CXCR4 2
SNPs/Variants for CXCR3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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The following additional 12 SNP(s) have been
found in Applied Biosystems data source:(Click
for
Applied Biosystems TaqMan ® Genotyping Assay ) HapMap Linkage Disequilibrium images for CXCR3 (up to first 250kb)
Disorders & Mutations for CXCR3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 300574 10/95 Novoseek disease relationships for CXCR3 gene (see all 95
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
inflammation
63.27
40
11786428 (2), 15108349 (2), 15155273 (2), 12953097 (2) (see all 29 )
multiple sclerosis
57.52
17
11867072 (2), 16709257 (1), 19225413 (1), 16899302 (1) (see all 15 )
lupus erythematosus cutaneous
51.07
1
18280341 (1)
mycosis fungoides
48.65
5
14708605 (2), 16713487 (1), 16931956 (1), 11242798 (1)
fibrosis idiopathic pulmonary
45.87
3
16085216 (2), 17137778 (1)
renal clear cell carcinoma
44.43
1
17997430 (1)
sarcoidosis pulmonary
43.64
6
17052298 (2), 11390417 (1), 9834133 (1), 17550373 (1)
bronchoalveolar lavage fluid
43.07
6
16085216 (1), 18644457 (1), 16490936 (1), 15956791 (1) (see all 6 )
periapical granuloma
42.91
1
11683586 (1)
dermatitis atopic
41.19
8
11511293 (2), 17666357 (2), 12190665 (1), 11174204 (1) (see all 5 )
About this table Genetic Association Database: CXCR3 Human Genome Epidemiology Navigator: CXCR3 (4 documents)
Medical News for CXCR3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CXCR3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/750 PubMed articles for CXCR3 gene (see all 750
): Single nucleotide polymorphisms in the coding regions of human CXC- chemokine receptors CXCR1, CXCR2 and CXCR3. (PubMed id 11196695) 1, 3, 4, 6 Kato H.... Tokunaga K. (2000) Chemokine receptor specific for IP10 and mig: structure, function, and expression in activated T-lymphocytes. (PubMed id 9064356) 2, 3, 4 Loetscher M....Moser B. (1996) Cloning and chromosomal mapping of three novel genes, GPR9, GPR10, and GPR14, encoding receptors related to interleukin 8, neuropeptide Y, and somatostatin receptors. (PubMed id 8666380) 2, 3, 4 Marchese A.... Docherty J.M. (1995) CXCR3 polymorphisms associated with risk of asthma. (PubMed id 16043121) 1, 3, 6 Cheong H.S....Oh B. (2005) An alternatively spliced variant of CXCR3 mediates the inhibition of endothelial cell growth induced by IP-10, Mig, and I-TAC, and acts as functional receptor for platelet factor 4. (PubMed id 12782716) 1, 3, 4 Lasagni L.... Romagnani P. (2003) Interferon-inducible T cell alpha chemoattractant (I-TAC): a novel non-ELR CXC chemokine with potent activity on activated T cells through selective high affinity binding to CXCR3. (PubMed id 9625760) 1, 3, 4 Cole K.E....Neote K. (1998) Identification and partial characterization of a variant of human CXCR3 generated by posttranscriptional exon skipping. (PubMed id 15528361) 3, 4 Ehlert J.E.... Strieter R.M. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) CXCR3 is involved in tubulointerstitial injury in human glomerulonephritis. (PubMed id 14742268) 1, 3 Segerer S....Grone H.J. (2004) CXCR3 requires tyrosine sulfation for ligand binding and a second extracellular loop arginine residue for ligand-induced chemotaxis. (PubMed id 16847335) 1, 3 Colvin R.A....Luster A.D. (2006)
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Genome Databases showing CXCR3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CXCR3
(According to HUGE )
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Specialized Databases showing CXCR3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CXCR3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CXCR3:
Tocris compounds for CXCR3
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Aliases for CXCR3
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Expression for CXCR3
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Paralogs for CXCR3
Pathways/Interactions for CXCR3
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009