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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CXCL17 Gene

protein-coding   GIFtS: 38
GCID: GC19M042932

Chemokine (C-X-C Motif) Ligand 17

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Chemokine (C-X-C Motif) Ligand 171 2     Dcip12
Dendritic Cell And Monocyte Chemokine-Like Protein2 3     UNQ4732
DMC2 3     VCC-12
VCC12 3     VEGF Co-Regulated Chemokine 12
C-X-C Motif Chemokine 172 3     

External Ids:    HGNC: 192321   Entrez Gene: 2843402   Ensembl: ENSG000001893777   OMIM: 6113875   UniProtKB: Q6UXB23   

Export aliases for CXCL17 gene to outside databases

Previous GC identifers: GC19M047625 GC19M039362


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CXCL17 Gene: 
CXCL17 (chemokine (C-X-C motif) ligand 17) is a protein-coding gene. Diseases associated with CXCL17 include duodenitis, and cholera.

UniProtKB/Swiss-Prot: VCC1_HUMAN, Q6UXB2
Function: Plays a role in angiogenesis and possibly in the development of tumors. May be a housekeeping chemokine
regulating recruitment of nonactivated blood monocytes and immature dendritic cells into tissues. May play a role
in the innate defense against infections




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.2  NT_011109.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CXCL17 gene promoter:
         COUP-TF1   COUP   FOXD1   Tal-1beta   AREB6   RORalpha1   COUP-TF   c-Myb   Sox9   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCXCL17 promoter sequence
   Search SABiosciences Chromatin IP Primers for CXCL17

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CXCL17


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.2   Ensembl cytogenetic band:  19q13.2   HGNC cytogenetic band: 19q13.2

CXCL17 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CXCL17 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M042932:  view genomic region     (about GC identifiers)

Start:
42,932,440 bp from pter      End:
42,947,200 bp from pter
Size:
14,761 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: VCC1_HUMAN, Q6UXB2 (See protein sequence)
Recommended Name: VEGF co-regulated chemokine 1 precursor  
Size: 119 amino acids; 13819 Da
Subcellular location: Secreted
Developmental stage: Detected in fetal lung
Secondary accessions: A8KAC0

Explore the universe of human proteins at neXtProt for CXCL17: NX_Q6UXB2

Explore proteomics data for CXCL17 at MOPED 

CXCL17 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

CXCL17 Protein Expression

REFSEQ proteins: NP_940879.1  
ENSEMBL proteins: 
 ENSP00000472467   ENSP00000345317  

Human Recombinant Protein Products for CXCL17: 
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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--

CXCL17 for ontologies           About GeneDecksing



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Browse CLIAs at Cloud-Clone Corp.


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q6UXB2

UniProtKB/Swiss-Prot: VCC1_HUMAN, Q6UXB2
Similarity: Belongs to the intercrine alpha (chemokine CxC) family


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: VCC1_HUMAN, Q6UXB2
Function: Plays a role in angiogenesis and possibly in the development of tumors. May be a housekeeping chemokine
regulating recruitment of nonactivated blood monocytes and immature dendritic cells into tissues. May play a role
in the innate defense against infections
Induction: Found to be up-regulated in duodenal mucosa during acute cholera

Phenotypes:
     1 MGI phenotypic allele for Cxcl17 (no phenotypes)


CXCL17 for phenotypes           About GeneDecksing

Animal Models:
     MGI mouse knock-out Cxcl17tm1Lex for CXCL17

   inGenious Targeting Laboratory - Custom generated mouse model solutions for CXCL17 
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section




Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CXCL17

Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001525angiogenesis IEA--
GO:0006935chemotaxis IEA--
GO:0030154cell differentiation IEA--

CXCL17 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CXCL17 (VCC1)

Search CenterWatch for drugs/clinical trials and news about CXCL17 / VCC1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CXCL17 gene: 
NM_198477.1  

Unigene Cluster for CXCL17:

Chemokine (C-X-C motif) ligand 17
Hs.445586  [show with all ESTs]
Unigene Representative Sequence: BG535485
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000601181 ENST00000341918(uc002otu.3)
miRNA
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Additional mRNA sequence: 

AK292985.1 AY358433.1 AY598464.1 BC093946.1 BC112095.1 

5 DOTS entries:

DT.101980768  DT.95263598  DT.121424030  DT.310278  DT.91706174 

24/74 AceView cDNA sequences (see all 74):

AA366288 AA479746 BM982101 BF055365 CB242167 AW298444 BX102380 BM766904 
AI860310 BM831028 NM_198477 BF196945 AY358433 BE645174 BM854000 AA481852 
BM769732 BM766526 BM766900 BM769069 AI207071 C00521 BM768531 BU951534 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CXCL17 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TTTTTCAAGA
CXCL17 Expression
About this image


See CXCL17 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CXCL17

SOURCE GeneReport for Unigene cluster: Hs.445586

UniProtKB/Swiss-Prot: VCC1_HUMAN, Q6UXB2
Tissue specificity: Detected in trachea, stomach, lung and skeletal muscle. Detected in intestine and in normal
and asthmatic lung (at protein level). Breast tumors showed 3- to 24-fold up-regulation

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CXCL17

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for CXCL17 gene from 1/5 species (see all 5)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Cxcl171 , 5 chemokine (C-X-C motif) ligand 171, 5 80.39(n)1
71.43(a)1
  7 (13.80 cM)5
2329831  NM_153576.21  NP_705804.21 
 254000535 


ENSEMBL Gene Tree for CXCL17 (if available)
TreeFam Gene Tree for CXCL17 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
Structural Variations
     Database of Genomic Variants (DGV) 4 variations for CXCL17:    About this table     
Variant IDTypeSubtypePubMed ID
esv2422471CNV Deletion17116639
nsv911804CNV Loss21882294
nsv526186CNV Gain19592680
dgv3886n71CNV Gain21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
OMIM gene information: 611387    OMIM disorders: --

4 diseases for CXCL17:    About MalaCards
duodenitis    cholera    hepatocellular carcinoma    pancreatitis


CXCL17 for disorders           About GeneDecksing


Export disorders for CXCL17 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for CXCL17 gene, integrated from 9 sources (see all 14):
(articles sorted by number of sources associating them with CXCL17)
    Utopia: connect your pdf to the dynamic
world of online information

  1. VCC-1, a novel chemokine, promotes tumor growth. (PubMed id 16989774)1, 2, 9 Weinstein E.J.... Mazzarella R. (2006)
  2. Novel human dendritic cell- and monocyte-attracting chemokine-like protein identified by fold recognition methods. (PubMed id 16455961)1, 2 Pisabarro M.T.... Schmidt K.N. (2006)
  3. The chemokine and chemokine receptor superfamilies and their molecular evolution. (PubMed id 17201934)1, 3 Zlotnik A....Nomiyama H. (2006)
  4. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)1, 2 Zhang Z. and Henzel W.J. (2004)
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
  6. VCC-1 over-expression inhibits cisplatin-induced apopt osis in HepG2 cells. (PubMed id 22425983)1 Zhou Z....Li M. (2012)
  7. CXCL17 is a mucosal chemokine elevated in idiopathic p ulmonary fibrosis that exhibits broad antimicrobial activity. (PubMed id 22611239)1 Burkhardt A.M....Zlotnik A. (2012)
  8. Site-directed mutagenesis of the CC chemokine binding protein 35K-Fc reveals residues essential for activity and mutations that incr ease the potency of CC chemokine blockade. (PubMed id 21586597)1 White G.E....Greaves D.R. (2011)
  9. CXCL17 and ICAM2 are associated with a potential anti -tumor immune response in early intraepithelial stages of human pancreatic carc inogenesis. (PubMed id 20955708)1 Hiraoka N....Kanai Y. (2011)
  10. Overexpression of VCC-1 gene in human hepatocellular carcinoma cells promotes cell proliferation and invasion. (PubMed id 19657564)1 Mu X....Li M. (2009)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 284340 HGNC: 19232 AceView: UNQ473 Ensembl:ENSG00000189377 euGenes: HUgn284340
ECgene: CXCL17 H-InvDB: CXCL17

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for CXCL17 Pharmacogenomics, SNPs, Pathways
Wikipedia http://en.wikipedia.org/wiki/CXCL17

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for CXCL17 gene:
Search GeneIP for patents involving CXCL17

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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 inGenious Targeting Laboratory - Custom generated mouse model solutions for CXCL17
 inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CXCL17
Customized:
 lentivirus for stable overexpression of CXCL17
 lentivirus expression plasmids for stable overexpression of CXCL17
 adenovirus for overexpression of CXCL17
 LSBio Antibodies in human, mouse, rat for CXCL17
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
       
GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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transforming growth factor, beta 1
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