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CXCL17 Gene

protein-coding   GIFtS: 39
GCID: GC19M042932

Chemokine (C-X-C Motif) Ligand 17

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Chemokine (C-X-C Motif) Ligand 171 2     Dcip12
DMC2 3 5     UNQ4732
VCC12 3 5     VCC-12
Dendritic Cell And Monocyte Chemokine-Like Protein2 3     VEGF Co-Regulated Chemokine 12
C-X-C Motif Chemokine 172 3     VEGF Coregulated Chemokine 12

External Ids:    HGNC: 192321   Entrez Gene: 2843402   Ensembl: ENSG000001893777   OMIM: 6113875   UniProtKB: Q6UXB23   

Export aliases for CXCL17 gene to outside databases

Previous GC identifers: GC19M047625 GC19M039362


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CXCL17 Gene:
CXCL17 (chemokine (C-X-C motif) ligand 17) is a protein-coding gene. Diseases associated with CXCL17 include duodenitis, and cholera.

UniProtKB/Swiss-Prot: VCC1_HUMAN, Q6UXB2
Function: Plays a role in angiogenesis and possibly in the development of tumors. May be a housekeeping chemokine
regulating recruitment of nonactivated blood monocytes and immature dendritic cells into tissues. May play a role
in the innate defense against infections




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000019.10  NC_018930.2  NT_011109.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the CXCL17 gene promoter:
         COUP-TF1   COUP   FOXD1   Tal-1beta   AREB6   RORalpha1   COUP-TF   c-Myb   Sox9   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCXCL17 promoter sequence
   Search Chromatin IP Primers for CXCL17

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CXCL17


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.2   Ensembl cytogenetic band:  19q13.2   HGNC cytogenetic band: 19q13.2

CXCL17 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CXCL17 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M042932:  view genomic region     (about GC identifiers)

Start:
42,932,440 bp from pter      End:
42,947,200 bp from pter
Size:
14,761 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: VCC1_HUMAN, Q6UXB2 (See protein sequence)
Recommended Name: VEGF coregulated chemokine 1 precursor  
Size: 119 amino acids; 13819 Da
Developmental stage: Detected in fetal lung
Secondary accessions: A8KAC0

Explore the universe of human proteins at neXtProt for CXCL17: NX_Q6UXB2

Explore proteomics data for CXCL17 at MOPED


See CXCL17 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_940879.1  
ENSEMBL proteins: 
 ENSP00000472467   ENSP00000345317  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: Q6UXB2

UniProtKB/Swiss-Prot: VCC1_HUMAN, Q6UXB2
Similarity: Belongs to the intercrine alpha (chemokine CxC) family


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: VCC1_HUMAN, Q6UXB2
Function: Plays a role in angiogenesis and possibly in the development of tumors. May be a housekeeping chemokine
regulating recruitment of nonactivated blood monocytes and immature dendritic cells into tissues. May play a role
in the innate defense against infections
Induction: Found to be up-regulated in duodenal mucosa during acute cholera

Phenotypes:
     1 MGI phenotypic allele for Cxcl17 (no phenotypes)


CXCL17 for phenotypes           About GeneDecksing

Animal Models:
     MGI mouse knock-out Cxcl17tm1Lex for CXCL17

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
VCC1_HUMAN, Q6UXB2: Secreted
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular5
lysosome1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--

CXCL17 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for CXCL17 About    
See pathways by source

SuperPathContained pathways About
1Chemokine Superfamily: Human/Mouse Ligand-Receptor Interactions
Chemokine Superfamily: Human/Mouse Ligand-Receptor Interactions0.81

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways

1 R&D Systems Pathway for CXCL17
    Chemokine Superfamily: Human/Mouse Ligand-Receptor Interactions




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Interactions:

    Search GeneGlobe Interaction Network for CXCL17

Gene Ontology (GO): 3 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001525angiogenesis IEA--
GO:0006935chemotaxis IEA--
GO:0030154cell differentiation IEA--

CXCL17 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for CXCL17 (VCC1)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for CXCL17 gene: 
NM_198477.1  

Unigene Cluster for CXCL17:

Chemokine (C-X-C motif) ligand 17
Hs.445586  [show with all ESTs]
Unigene Representative Sequence: BG535485
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000601181 ENST00000341918(uc002otu.3)
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Additional mRNA sequence: 

AK292985.1 AY358433.1 AY598464.1 BC093946.1 BC112095.1 

5 DOTS entries:

DT.101980768  DT.95263598  DT.121424030  DT.310278  DT.91706174 

Selected AceView cDNA sequences (see all 74):

AA481852 C00521 AI207071 BM769732 BM854000 BM766904 AI860310 BF055365 
BM768531 BE645174 AY358433 AA479746 BM766900 BF196945 CB242167 BX102380 
AA366288 NM_198477 BM831028 BM982101 BM769069 BM766526 AW298444 AI142875 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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CXCL17 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TTTTTCAAGA
CXCL17 Expression
About this image

CXCL17 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

CXCL17 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.445586

UniProtKB/Swiss-Prot: VCC1_HUMAN, Q6UXB2
Tissue specificity: Detected in trachea, stomach, lung and skeletal muscle. Detected in intestine and in normal
and asthmatic lung (at protein level). Breast tumors showed 3- to 24-fold up-regulation

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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for CXCL17 gene from Selected species (see all 5)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Cxcl171 , 5 chemokine (C-X-C motif) ligand 171, 5 80.33(n)1
71(a)1
  7 (13.80 cM)5
2329831  NM_153576.21  NP_705804.21 
 254000535 


ENSEMBL Gene Tree for CXCL17 (if available)
TreeFam Gene Tree for CXCL17 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Structural Variations
     Database of Genomic Variants (DGV) 4 variations for CXCL17:    About this table    
Variant IDTypeSubtypePubMed ID
esv2422471CNV Deletion17116639
nsv911804CNV Loss21882294
nsv526186CNV Gain19592680
dgv3886n71CNV Gain21882294

Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 611387    OMIM disorders: --

6 diseases for CXCL17:    
About MalaCards
duodenitis    cholera    idiopathic pulmonary fibrosis    pulmonary fibrosis
hepatocellular carcinoma    pancreatitis


CXCL17 for disorders           About GeneDecksing


Export disorders for CXCL17 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for CXCL17 gene, integrated from 10 sources (see all 14):
(articles sorted by number of sources associating them with CXCL17)
    Utopia: connect your pdf to the dynamic
world of online information

  1. VCC-1, a novel chemokine, promotes tumor growth. (PubMed id 16989774)1, 2, 9 Weinstein E.J.... Mazzarella R. (Biochem. Biophys. Res. Commun. 2006)
  2. Novel human dendritic cell- and monocyte-attracting chemokine-like protein identified by fold recognition methods. (PubMed id 16455961)1, 2 Pisabarro M.T.... Schmidt K.N. (J. Immunol. 2006)
  3. The chemokine and chemokine receptor superfamilies and their molecular evolution. (PubMed id 17201934)1, 3 Zlotnik A....Nomiyama H. (Genome Biol. 2006)
  4. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)1, 2 Zhang Z. and Henzel W.J. (Protein Sci. 2004)
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (Genome Res. 2003)
  6. VCC-1 over-expression inhibits cisplatin-induced apoptosis in HepG2 cells. (PubMed id 22425983)1 Zhou Z....Li M. (Biochem. Biophys. Res. Commun. 2012)
  7. CXCL17 is a mucosal chemokine elevated in idiopathic pulmonary fibrosis that exhibits broad antimicrobial activity. (PubMed id 22611239)1 Burkhardt A.M....Zlotnik A. (J. Immunol. 2012)
  8. Site-directed mutagenesis of the CC chemokine binding protein 35K-Fc reveals residues essential for activity and mutations that increase the potency of CC chemokine blockade. (PubMed id 21586597)1 White G.E....Greaves D.R. (Mol. Pharmacol. 2011)
  9. CXCL17 and ICAM2 are associated with a potential anti-tumor immune response in early intraepithelial stages of human pancreatic carcinogenesis. (PubMed id 20955708)1 Hiraoka N....Kanai Y. (Gastroenterology 2011)
  10. Overexpression of VCC-1 gene in human hepatocellular carcinoma cells promotes cell proliferation and invasion. (PubMed id 19657564)1 Mu X....Li M. (Acta Biochim. Biophys. Sin. (Shanghai) 2009)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 284340 HGNC: 19232 AceView: UNQ473 Ensembl:ENSG00000189377 euGenes: HUgn284340
ECgene: CXCL17 H-InvDB: CXCL17

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for CXCL17 Pharmacogenomics, SNPs, Pathways
Wikipedia http://en.wikipedia.org/wiki/CXCL17

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for CXCL17 gene:
Search GeneIP for patents involving CXCL17

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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