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Aliases for CXCL11 Gene

Aliases for CXCL11 Gene

  • C-X-C Motif Chemokine Ligand 11 2 3
  • Chemokine (C-X-C Motif) Ligand 11 2 3 5
  • Small Inducible Cytokine Subfamily B (Cys-X-Cys), Member 11 2 3
  • Interferon-Inducible T-Cell Alpha Chemoattractant 3 4
  • Interferon Gamma-Inducible Protein 9 3 4
  • Small-Inducible Cytokine B11 3 4
  • Beta-R1 3 4
  • SCYB11 3 4
  • SCYB9B 3 4
  • I-TAC 3 4
  • H174 3 4
  • IP-9 3 4
  • Small Inducible Cytokine Subfamily B (Cys-X-Cys), Member 9B 3
  • Small Inducible Cytokine B11 3
  • B-R1 3
  • ITAC 4
  • IP9 3

External Ids for CXCL11 Gene

Previous HGNC Symbols for CXCL11 Gene

  • SCYB9B
  • SCYB11

Previous GeneCards Identifiers for CXCL11 Gene

  • GC04M076850
  • GC04M077145
  • GC04M077347
  • GC04M077413
  • GC04M077312
  • GC04M076954
  • GC04M072707

Summaries for CXCL11 Gene

Entrez Gene Summary for CXCL11 Gene

  • Chemokines are a group of small (approximately 8 to 14 kD), mostly basic, structurally related molecules that regulate cell trafficking of various types of leukocytes through interactions with a subset of 7-transmembrane, G protein-coupled receptors. Chemokines also play fundamental roles in the development, homeostasis, and function of the immune system, and they have effects on cells of the central nervous system as well as on endothelial cells involved in angiogenesis or angiostasis. Chemokines are divided into 2 major subfamilies, CXC and CC. This antimicrobial gene is a CXC member of the chemokine superfamily. Its encoded protein induces a chemotactic response in activated T-cells and is the dominant ligand for CXC receptor-3. The gene encoding this protein contains 4 exons and at least three polyadenylation signals which might reflect cell-specific regulation of expression. IFN-gamma is a potent inducer of transcription of this gene. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2014]

GeneCards Summary for CXCL11 Gene

CXCL11 (C-X-C Motif Chemokine Ligand 11) is a Protein Coding gene. Diseases associated with CXCL11 include Nasal Cavity Cancer and Nasal Cavity Adenocarcinoma. Among its related pathways are Peptide ligand-binding receptors and ERK Signaling. GO annotations related to this gene include heparin binding and CXCR3 chemokine receptor binding.

UniProtKB/Swiss-Prot for CXCL11 Gene

  • Chemotactic for interleukin-activated T-cells but not unstimulated T-cells, neutrophils or monocytes. Induces calcium release in activated T-cells. Binds to CXCR3. May play an important role in CNS diseases which involve T-cell recruitment. May play a role in skin immune responses.

Gene Wiki entry for CXCL11 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CXCL11 Gene

Genomics for CXCL11 Gene

Regulatory Elements for CXCL11 Gene

Enhancers for CXCL11 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CXCL11 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the CXCL11 gene promoter:

Genomic Location for CXCL11 Gene

Chromosome:
4
Start:
76,033,682 bp from pter
End:
76,041,415 bp from pter
Size:
7,734 bases
Orientation:
Minus strand

Genomic View for CXCL11 Gene

Genes around CXCL11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CXCL11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CXCL11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CXCL11 Gene

Proteins for CXCL11 Gene

  • Protein details for CXCL11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O14625-CXL11_HUMAN
    Recommended name:
    C-X-C motif chemokine 11
    Protein Accession:
    O14625
    Secondary Accessions:
    • Q53YA3
    • Q92840

    Protein attributes for CXCL11 Gene

    Size:
    94 amino acids
    Molecular mass:
    10365 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAB17374.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for CXCL11 Gene

neXtProt entry for CXCL11 Gene

Proteomics data for CXCL11 Gene at MOPED

Post-translational modifications for CXCL11 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CXCL11 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for CXCL11 (CXCL11/I-TAC)

No data available for DME Specific Peptides for CXCL11 Gene

Domains & Families for CXCL11 Gene

Gene Families for CXCL11 Gene

Protein Domains for CXCL11 Gene

Suggested Antigen Peptide Sequences for CXCL11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O14625

UniProtKB/Swiss-Prot:

CXL11_HUMAN :
  • Belongs to the intercrine alpha (chemokine CxC) family.
Family:
  • Belongs to the intercrine alpha (chemokine CxC) family.
genes like me logo Genes that share domains with CXCL11: view

Function for CXCL11 Gene

Molecular function for CXCL11 Gene

UniProtKB/Swiss-Prot Function:
Chemotactic for interleukin-activated T-cells but not unstimulated T-cells, neutrophils or monocytes. Induces calcium release in activated T-cells. Binds to CXCR3. May play an important role in CNS diseases which involve T-cell recruitment. May play a role in skin immune responses.
UniProtKB/Swiss-Prot Induction:
By IFNG/IFN-gamma and IFNB1/IFN-beta. Induction by IFNG/IFN-gamma is enhanced by TNF in monocytes, dermal fibroblasts and endothelial cells, and by IL1/interleukin-1 in astrocytes.

Gene Ontology (GO) - Molecular Function for CXCL11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 18275857
genes like me logo Genes that share ontologies with CXCL11: view
genes like me logo Genes that share phenotypes with CXCL11: view

Animal Model Products

  • Taconic Biosciences Mouse Models for CXCL11

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CXCL11 Gene

Localization for CXCL11 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CXCL11 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CXCL11 Gene COMPARTMENTS Subcellular localization image for CXCL11 gene
Compartment Confidence
extracellular 5
nucleus 2
cytosol 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for CXCL11 Gene

Pathways & Interactions for CXCL11 Gene

genes like me logo Genes that share pathways with CXCL11: view

Gene Ontology (GO) - Biological Process for CXCL11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002690 positive regulation of leukocyte chemotaxis IBA --
GO:0006935 chemotaxis IDA 12782716
GO:0006955 immune response IEA,IBA --
GO:0007165 signal transduction TAS 10233762
GO:0007186 G-protein coupled receptor signaling pathway IBA --
genes like me logo Genes that share ontologies with CXCL11: view

No data available for SIGNOR curated interactions for CXCL11 Gene

Drugs & Compounds for CXCL11 Gene

(8) Drugs for CXCL11 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0

(3) Additional Compounds for CXCL11 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with CXCL11: view

Transcripts for CXCL11 Gene

mRNA/cDNA for CXCL11 Gene

Unigene Clusters for CXCL11 Gene

Chemokine (C-X-C motif) ligand 11:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CXCL11 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2:

Relevant External Links for CXCL11 Gene

GeneLoc Exon Structure for
CXCL11
ECgene alternative splicing isoforms for
CXCL11

Expression for CXCL11 Gene

mRNA expression in normal human tissues for CXCL11 Gene

mRNA differential expression in normal tissues according to GTEx for CXCL11 Gene

This gene is overexpressed in Brain - Substantia nigra (x18.6) and Pancreas (x4.8).

SOURCE GeneReport for Unigene cluster for CXCL11 Gene Hs.632592

mRNA Expression by UniProt/SwissProt for CXCL11 Gene

O14625-CXL11_HUMAN
Tissue specificity: High levels in peripheral blood leukocytes, pancreas and liver astrocytes. Moderate levels in thymus, spleen and lung. Low levels in placenta, prostate and small intestine. Also found in epidermal basal layer keratinocytes in skin disorders.
genes like me logo Genes that share expression patterns with CXCL11: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for CXCL11 Gene

Orthologs for CXCL11 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CXCL11 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CXCL11 35
  • 87.1 (n)
  • 83.87 (a)
CXCL11 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CXCL11 35
  • 86.88 (n)
  • 75.53 (a)
chimpanzee
(Pan troglodytes)
Mammalia CXCL11 35
  • 100 (n)
  • 100 (a)
CXCL11 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cxcl11 35
  • 74.11 (n)
  • 63.83 (a)
mouse
(Mus musculus)
Mammalia Cxcl11 36
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CXCL11 36
  • 44 (a)
OneToOne
Species with no ortholog for CXCL11:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CXCL11 Gene

ENSEMBL:
Gene Tree for CXCL11 (if available)
TreeFam:
Gene Tree for CXCL11 (if available)

Paralogs for CXCL11 Gene

(5) SIMAP similar genes for CXCL11 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CXCL11: view

No data available for Paralogs for CXCL11 Gene

Variants for CXCL11 Gene

Sequence variations from dbSNP and Humsavar for CXCL11 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
VAR_048700 -

Structural Variations from Database of Genomic Variants (DGV) for CXCL11 Gene

Variant ID Type Subtype PubMed ID
nsv7363 OTHER Inversion 18451855
esv27112 CNV Gain 19812545

Variation tolerance for CXCL11 Gene

Residual Variation Intolerance Score: 53% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.58; 12.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CXCL11 Gene

Human Gene Mutation Database (HGMD)
CXCL11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CXCL11 Gene

Disorders for CXCL11 Gene

MalaCards: The human disease database

(14) MalaCards diseases for CXCL11 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
nasal cavity cancer
  • malignant neoplasm of nasal cavities
nasal cavity adenocarcinoma
  • adenocarcinoma of nasal cavity
endotheliitis
opsoclonus-myoclonus syndrome
  • infantile polymyoclonus
tick-borne encephalitis
  • central european encephalitis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CXCL11

Genetic Association Database (GAD)
CXCL11
Human Genome Epidemiology (HuGE) Navigator
CXCL11
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CXCL11
genes like me logo Genes that share disorders with CXCL11: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CXCL11 Gene

Publications for CXCL11 Gene

  1. The human gene encoding SCYB9B, a putative novel CXC chemokine, maps to human chromosome 4q21 like the closely related genes for MIG (SCYB9) and INP10 (SCYB10). (PMID: 9730616) Erdel M. … Werner-Felmayer G. (Cytogenet. Cell Genet. 1998) 2 3 4 67
  2. Cord blood cytokines and chemokines and development of allergic disease. (PMID: 19175890) Sandberg M. … Jenmalm M.C. (Pediatr Allergy Immunol 2009) 3 23
  3. Retinoic acid-inducible gene-I is induced by interferon-gamma and regulates CXCL11 expression in HeLa cells. (PMID: 18258269) Yuzawa E. … Satoh K. (Life Sci. 2008) 3 23
  4. Stromal cell-derived factors 1alpha and 1beta, inflammatory protein-10 and interferon-inducible T cell chemo-attractant are novel substrates of dipeptidyl peptidase 8. (PMID: 18275857) Ajami K. … Gorrell M.D. (FEBS Lett. 2008) 3 23
  5. Citrullination of CXCL10 and CXCL11 by peptidylarginine deiminase: a naturally occurring posttranslational modification of chemokines and new dimension of immunoregulation. (PMID: 18645041) Loos T. … Proost P. (Blood 2008) 3 23

Products for CXCL11 Gene

Sources for CXCL11 Gene

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