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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

CXCL1 Gene

protein-coding GIFtS: 63
GCID: GC04P074724

chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating...

(Previous names: GRO1 oncogene (melanoma growth stimulating activity, alpha),...)
(Previous symbols: MGSA, GRO1, FSP)

Explore 91 diseases affiliated with
CXCL1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Chemokine (C-X-C Motif) Ligand 1 (Melanoma Growth Stimulating Activity, Alpha)¹ ²		Neutrophil-Activating Protein 3² ³
GRO1¹ ² ³ ⁵		GRO-Alpha(1-73)¹
MGSA¹ ² ³ ⁵		C-X-C Motif Chemokine 1² ³
NAP-3¹ ² ³		GRO1 Oncogene (Melanoma Growth-Stimulating Activity)²
SCYB1¹ ² ³		Growth-Regulated Alpha Protein²
FSP¹ ²		Melanoma Growth Stimulatory Activity Alpha²
GROa¹ ²		MGSA Alpha²
MGSA-A¹		GRO³
Fibroblast Secretory Protein¹ ²		GROA³
GRO1 Oncogene (Melanoma Growth Stimulating Activity, Alpha)¹ ²		Melanoma Growth Stimulatory Activity³

External Ids:	HGNC: 4602¹	Entrez Gene: 2919²	Ensembl: ENSG00000163739⁷	OMIM: 155730⁵	UniProtKB: P09341³

Export aliases for CXCL1 gene to outside databases

Previous GC identifers: GC04P074974 GC04P075135 GC04P075201 GC04P075100 GC04P070546

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CXCL1:

This gene encodes a member of the CXC subfamily of chemokines. The encoded protein is a secreted growth factor that

signal through the G-protein coupled receptor, CXC receptor 2. This protein plays a role in inflammation and as a

chemoattractant for neutrophils. Aberrant expression this protein is associated with the growth and progression of

certain tumors. A naturally occurring processed form of this protein has increased chemotactic activity. Alternate

splicing results in coding and non-coding variants of this gene. A pseudogene of this gene is found on chromosome 4.

(provided by RefSeq, Jan 2012)

UniProtKB/Swiss-Prot: GROA_HUMAN, P09341

Function: Has chemotactic activity for neutrophils. May play a role in inflammation and exerts its effects on

endothelial cells in an autocrine fashion. In vitro, the processed forms GRO-alpha(4-73), GRO-alpha(5-73) and

GRO-alpha(6-73) show a 30-fold higher chemotactic activity

Gene Wiki entry for CXCL1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000004.11 NC_018915.1 NT_022778.16

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the CXCL1 gene promoter:
Bach1 C/EBPbeta STAT1 AML1a NF-kappaB2 MyoD STAT1beta NF-kappaB1 Evi-1 STAT1alpha
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CXCL1 promoter sequence

Search SABiosciences Chromatin IP Primers for CXCL1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CXCL1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q21 Ensembl cytogenetic band: 4q13.3 HGNC cytogenetic band: 4q13.3

CXCL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CXCL1 gene location

GeneLoc information about chromosome 4 GeneLoc Exon Structure

GeneLoc location for GC04P074724: view genomic region (about GC identifiers)

Start:	74,735,109 bp from pter	End:	74,736,959 bp from pter
Size:	1,851 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: GROA_HUMAN, P09341 (See protein sequence)

Recommended Name: Growth-regulated alpha protein precursor

Size: 107 amino acids; 11301 Da

Subcellular location: Secreted

4 PDB 3D structures from and Proteopedia for CXCL1:

1MGS (3D)

1MSG (3D)

1MSH (3D)

1ROD (3D)

Secondary accessions: Q9UCR7

Explore the universe of human proteins at neXtProt for CXCL1: NX_P09341

Post-translational modifications:

N-terminal processed forms GRO-alpha(4-73), GRO-alpha(5-73) and GRO-alpha(6-73) are produced by proteolytic cleavage

after secretion from peripheral blood monocytes¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P09341

CXCL1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_001502.1

ENSEMBL proteins:

ENSP00000379110

Reactome Protein details: P09341
Human Recombinant Protein Products for CXCL1:

	Browse Purified and Recombinant Proteins at EMD Millipore
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	Novus Biologicals CXCL1 Proteins Novus Biologicals CXCL1 Lysates
	Browse Sino Biological Recombinant Proteins
	ProSpec Recombinant Protein for CXCL1
	Browse Proteins at Uscn

Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	TAS	--
GO:0005615	extracellular space	IEA	--
GO:0005622	intracellular	--	--

CXCL1 for ontologies About GeneDecksing

CXCL1 Antibody Products:

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Assay Products for CXCL1:

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	R&D Systems ELISAs for CXCL1 (CXCL1/GRO alpha/KC/CINC-1) (see all)
	GenScript Custom Assay Services for CXCL1
	Enzo Life Sciences assays for CXCL1
	Browse ELISAs and CLIAs at Uscn

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

CXCL1 for domains About GeneDecksing

3 InterPro domains/families:

IPR001811 Chemokine_IL8-like_dom

IPR001089 Chemokine_CXC

IPR018048 Chemokine_CXC_CS

Graphical View of Domain Structure for InterPro Entry P09341

ProtoNet protein and cluster: P09341

1 Blocks protein family: IPB002473 Interleukin-8 signature

UniProtKB/Swiss-Prot: GROA_HUMAN, P09341

Similarity: Belongs to the intercrine alpha (chemokine CxC) family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: GROA_HUMAN, P09341

Function: Has chemotactic activity for neutrophils. May play a role in inflammation and exerts its effects on

endothelial cells in an autocrine fashion. In vitro, the processed forms GRO-alpha(4-73), GRO-alpha(5-73) and

GRO-alpha(6-73) show a 30-fold higher chemotactic activity

Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005102	receptor binding	TAS	9079638
GO:0008009	chemokine activity	IEA	--
GO:0008047	enzyme activator activity	TAS	9079638
GO:0008083	growth factor activity	IEA	--

CXCL1 for ontologies About GeneDecksing

Phenotypes:
2 GenomeRNAi human phenotypes for CXCL1:

Decreased focal adhesion (FA)

Metaphase cells

1 MGI mutant phenotype (inferred from 1 allele) (MGI details for Cxcl1):

cardiovascular system

CXCL1 for phenotypes About GeneDecksing

Animal Models:
Mouse knock-out Cxcl1^tm1Wabo for CXCL1

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for CXCL1

miRNA Products:		OriGene 3'-UTR Clone: CXCL1 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CXCL1
		7 QIAGEN miScript miRNA Assays for microRNAs that regulate CXCL1:
		hsa-miR-3163 hsa-miR-607 hsa-miR-873 hsa-miR-641 hsa-miR-539 hsa-miR-3662 hsa-miR-3617
		SwitchGear 3'UTR luciferase reporter plasmid: CXCL1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
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Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CXCL1 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CXCL1 (see all 2) OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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Cell Line Products:		GenScript Custom overexpressing Cell Line Services for CXCL1
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In Situ Assay
Products:

Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for CXCL1

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/17 super-pathways (see all 17) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

PEDF Induced Signaling

8/9 pathways (see all 9)
PEDF Induced Signaling	1.00	RAR-Gamma-RXR-Alpha Degradation	0.54
MIF Mediated Glucocorticoid Regulation	0.73	STAT3 Pathway	0.47
MIF Regulation of Innate Immune Cells	0.71	Endothelin-1 Signaling Pathway	0.44
IL-6 Pathway	0.61	Cytokine-cytokine receptor interaction	0.26

Class A/1 (Rhodopsin-like receptors)

	Class A/1 (Rhodopsin-like receptors)	1.00			Peptide ligand-binding receptors	0.61
	GPCR ligand binding	0.75			G alpha (i) signalling events	0.44

Rho Family GTPases

	Rho Family GTPases	1.00			Molecular Mechanisms of Cancer	0.51
	ERK Signaling	0.61

Signaling by GPCR

	Signaling by GPCR	1.00			Signal Transduction	0.56
	GPCR downstream signaling	0.89

PAK Pathway

PAK Pathway

1.00

Antioxidant Action of Vitamin-C

0.56

Pathway sources
See GeneCards unified pathways
Show all pathways

5/17 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CXCL1 (see all 17)

	Endothelin-1 Signaling Pathway
	Molecular Mechanisms of Cancer
	Antioxidant Action of Vitamin-C
	Transendothelial Migration of Leukocytes
	MIF Mediated Glucocorticoid Regulation

2 GeneGo (Thomson Reuters) Pathways for CXCL1

	Cytokine production by Th17 cells in CF (Mouse model)
	Cytokine production by Th17 cells in CF

3 BioSystems Pathways for CXCL1

	Cytokines and Inflammatory Response
	Senescence and Autophagy
	IL23-mediated signaling events

5/8 Reactome Pathways for CXCL1 (see all 8)

	GPCR downstream signaling
	Peptide ligand-binding receptors
	Chemokine receptors bind chemokines
	Signal Transduction
	Signaling by GPCR

5/6 Kegg Pathways (Kegg details for CXCL1) (see all 6):

	Cytokine-cytokine receptor interaction
	Chemokine signaling pathway
	NOD-like receptor signaling pathway
	Epithelial cell signaling in Helicobacter pylori infection
	Amoebiasis

CXCL1 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for CXCL1

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/163 Interacting proteins for CXCL1 (P09341³ ENSP00000379110⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 163)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
CXCR2	P25025³, ENSP00000319635⁴	I2D: score=2 STRING: ENSP00000319635
MMP9	P14780³, ENSP00000361405⁴	I2D: score=1 STRING: ENSP00000361405
CXCR1	P25024³, ENSP00000295683⁴	I2D: score=2 STRING: ENSP00000295683
DARC	Q16570³, ENSP00000357103⁴	I2D: score=3 STRING: ENSP00000357103
HIPK2	Q9H2X6³	I2D: score=1

About this table

Gene Ontology (GO): 5/11 biological process terms (GO ID links to tree view) (see all 11): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006935	chemotaxis	TAS	10820279
GO:0006954	inflammatory response	IEA	--
GO:0006955	immune response	IEA	--
GO:0007165	signal transduction	TAS	9725262
GO:0007186	G-protein coupled receptor signaling pathway	TAS	10820279

CXCL1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

CXCL1 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CXCL1
10/46 Novoseek chemical compound relationships for CXCL1 gene (see all 46) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
groalpha	97.3	249	16510595 (11), 11470861 (9), 9641651 (9), 11495082 (8) (see all 68)
grogamma	92.2	12	8702798 (4), 9553055 (2), 10695618 (1), 9054580 (1) (see all 7)
rantes	87.6	132	10881738 (6), 12915769 (5), 12620497 (4), 10464551 (3) (see all 86)
grobeta	87.4	14	8702798 (4), 16540656 (3), 9553055 (2), 10695618 (1) (see all 7)
ppbp	72.9	3	7698025 (1), 10343098 (1), 9465307 (1)
ccl3	68.3	10	17023518 (2), 18565769 (2), 12851650 (1), 19162037 (1) (see all 8)
tarc	50.7	3	11533168 (1), 15975968 (1), 16316467 (1)
vegf	36.7	21	18832182 (3), 19176759 (3), 15958549 (2), 17406066 (1) (see all 14)
sulfapyridine	36.5	2	12231210 (2)
leukotriene b4	28.4	14	18576322 (5), 18515326 (1), 20008148 (1), 9353042 (1) (see all 6)

Search CenterWatch for drugs/clinical trials and news about CXCL1 / GROA

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CXCL1 gene:

NM_001511.3

Unigene Cluster for CXCL1:

Chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)

Hs.789 [show with all ESTs]

Unigene Representative Sequence: NR_046035

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000509101 ENST00000395761(uc003hhh.2)

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		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CXCL1
		7 QIAGEN miScript miRNA Assays for microRNAs that regulate CXCL1:
		hsa-miR-3163 hsa-miR-607 hsa-miR-873 hsa-miR-641 hsa-miR-539 hsa-miR-3662 hsa-miR-3617
		SwitchGear 3'UTR luciferase reporter plasmid: CXCL1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
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		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CXCL1

Additional cDNA sequence:

BC011976.1 BT006880.1 J03561.1 NR_046035.1 X12510.1

3 DOTS entries:

DT.446046 DT.100777292 DT.121241560

24/94 AceView cDNA sequences (see all 94):

CB149087 D82649 X12510 BQ021711 AW261997 CA307413 BU626840 BF000107

BM737792 CB140372 BM994730 NM_001511 BQ000742 AI609640 BC011976 AA315570

AI362592 CA438155 AA936997 BP337762 AI978805 BM771312 BQ001491 W46900

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CXCL1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTGAAACTTT

About this image

CXCL1 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

3 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Testis

Seminiferous Tubules

Sertoli cells

Testis

Adipose

Body Subcutaneous White Adipose

Adipose

Visceral White Adipose

Adipose

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 7 LifeMap Cells

Name

Category

PureStem™ mesenchymal progenitor 7SMOO32 (Embryonic Progenitor Cell)

Adipose, Bone, Cartilage

PureStem™ progenitor E44 (Embryonic Progenitor Cell)

PureStem™ progenitor EN13 (Embryonic Progenitor Cell)

PureStem™ progenitor EN27 (Embryonic Progenitor Cell)

Fetal cardiomyocytes (20 weeks) (Primary Cell)

Heart, Myocardium

Pancreatic endoderm/endocrine precursor-like cells (A scalable, suspensi...)

CD31, CD144 positive cells (Two-step protocol fo...)

See CXCL1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CXCL1

SOURCE GeneReport for Unigene cluster: Hs.789

SABiosciences Expression via Pathway-Focused PCR Arrays including CXCL1 (see all 16):

Neurogenesis in human mouse rat

Nephrotoxicity in human mouse rat

Growth Factors in human mouse rat

NFKB Signaling Targets in human mouse rat

Wound Healing in human mouse rat

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		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CXCL1

In Situ
Assay Products:

Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for CXCL1

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for CXCL1 gene from 1/6 species (see all 6) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	--	Uncharacterized protein	40(a)	1 → many	4(52472071-52473367)

ENSEMBL Gene Tree for CXCL1 (if available)
TreeFam Gene Tree for CXCL1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for CXCL1 gene

PPBP² PF4² PF4V1² CXCL6² CXCL3² CXCL5² CXCL2² IL8²

14 SIMAP similar genes for CXCL1 using alignment to 1 protein entry: GROA_HUMAN:

MGSA alpha CXCL3 CXCL2 PPBP CXCL5 CXCL6

CXCL9 PF4 PF4V1 CXCL10 IL8 CXCL11

CXCL12 CXCL14

CXCL1 for paralogs About GeneDecksing

1 Pseudogenes.org Pseudogene for CXCL1
PGOHUM00000245590

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 4 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs182409142^1,2		--	74733122(+)	`AGAAAC/TAATTG`	2	--	us2k¹		0	--	--	--	--
rs186914467^1,2		--	74733165(+)	`GTCTGC/TTTTAA`	2	--	us2k¹		0	--	--	--	--
rs78572627^1,2	F	--	74733296(+)	`ATTCTG/ATCTTC`	2	--	us2k¹		1		WA	118
rs73828896^1,2	C	--	74733345(+)	`TATATG/AGTGTT`	2	--	us2k¹		2		WA	120
rs192442248^1,2		--	74733351(+)	`GTGTTA/GTATAC`	2	--	us2k¹		0	--	--	--	--
rs185093233^1,2		--	74733454(+)	`ATATAA/TATATA`	2	--	us2k¹		0	--	--	--	--
rs4992978^1,2	C	--	74733474(+)	`ATATAT/AATATA`	2	--	us2k¹ tfbs³		1		NA	2
rs28576170^1,2	C	--	74733482(+)	`ATATAT/AATATA`	2	--	us2k¹ tfbs³		1		WA	2
rs28530514^1,2	C	--	74733555(+)	`TTTTTA/TTTAAA`	2	--	us2k¹ trp³		1		CSA	1
rs3117603^1,2	C	--	74733558(+)	`TTTTTT/AAACAA`	2	--	us2k¹ tfbs³		1		CSA	1

HapMap Linkage Disequilibrium report for CXCL1 (74735109 - 74736959 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CXCL1: --

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CXCL1

DNA2.0 Custom Variant and Variant Library Synthesis for CXCL1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

CXCL1 for disorders           About GeneDecksing

OMIM gene information: 155730    OMIM disorders: --

20/91 diseases for CXCL1 (see all 91):    About MalaCards

melanoma adult respiratory distress syndrome polymyalgia rheumatica abdominal aortic aneurysm

peptic ulcer aortic aneurysm inflammatory bowel disease duodenal ulcer

yellow fever chronic obstructive pulmonary disease spastic paraplegia essential thrombocythemia

kaposi's sarcoma klebsiella chronic granulomatous disease bacterial meningitis

meningitis systemic lupus erythematosus lupus erythematosus cytomegalovirus infection

2 diseases from the University of Copenhagen DISEASES database for CXCL1:

Melanoma Lung disease

10/58 Novoseek disease relationships for CXCL1 gene (see all 58) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
inflammation	65.4	25	9730682 (1), 10392755 (1), 11371564 (1), 12549928 (1) (see all 23)
necrosis	58.3	35	9215253 (2), 1744577 (1), 8245503 (1), 9143736 (1) (see all 32)
melanoma	50.4	46	11406569 (2), 18056965 (2), 11719444 (2), 16098041 (2) (see all 29)
nasal polyps	47.3	7	16608789 (4), 10889487 (2), 17703097 (1)
tumors	44.1	68	18451219 (4), 16618733 (3), 19276354 (2), 12427307 (2) (see all 46)
bronchoalveolar lavage fluid	41.5	4	19155472 (1), 14662873 (1), 7582292 (1)
rheumatoid arthritis	39.1	6	10437780 (2), 10881738 (2), 9232436 (1), 18576322 (1)
gastritis	35	1	15557597 (1)
pneumonia	25.5	1	18345025 (1)
response acute phase	25.2	1	11916915 (1)

Genetic Association Database (GAD): CXCL1
Human Genome Epidemiology (HuGE) Navigator: CXCL1 (8 documents)

Export disorders for CXCL1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for CXCL1 gene, integrated from 9 sources (see all 538):
(articles sorted by number of sources associating them with CXCL1)

Utopia: connect your pdf to the dynamic
world of online information

Association study of the chemokine, CXC motif, ligand 1 (CXCL1) gene with sporadic Alzheimer's disease in a Japanese population. (PubMed id 15843053)^{1, 4, 9} Tamura Y....Hohjoh H. (2005)
Isolation of the CXC chemokines ENA-78, GRO alpha and GRO gamma from tumor cells and leukocytes reveals NH2-terminal heterogeneity. Functional comparison of different natural isoforms. (PubMed id 10095777)^{1, 2, 9} Wuyts A.... Van Damme J. (1999)
Identification of three related human GRO genes encoding cytokine functions. (PubMed id 2217207)^{1, 3, 9} Haskill S.... Sager R. (1990)
Lipopolysaccharide-stimulated human monocytes secrete, apart from neutrophil-activating peptide 1/interleukin 8, a second neutrophil- activating protein. NH2-terminal amino acid sequence identity with melanoma growth stimulatory activity. (PubMed id 2182761)^{1, 2, 9} Schroeder J.-M.... Christophers E. (1990)
Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)^{1, 2} Zhang Z. and Henzel W.J. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
The solution structure of melanoma growth stimulating activity. (PubMed id 8089846)^{1, 2} Fairbrother W.J.... Horuk R. (1994)
Solution structure of GRO/melanoma growth stimulatory activity determined by 1H NMR spectroscopy. (PubMed id 7806518)^{1, 2} Kim K.S.... Sykes B.D. (1994)
1H assignment and secondary structure determination of human melanoma growth stimulating activity (MGSA) by NMR spectroscopy. (PubMed id 8397104)^{1, 2} Fairbrother W.J.... Horuk R. (1993)
Nucleotide sequence of the human melanoma growth stimulatory activity (MGSA) gene. (PubMed id 2129556)^{1, 2} Baker N.E.... Richmond A. (1990)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 2919	HGNC: 4602	AceView: CXCL1	Ensembl:ENSG00000163739	euGenes: HUgn2919
ECgene: CXCL1	Kegg: 2919	H-InvDB: CXCL1

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for CXCL1	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for CXCL1	Genetics and Cytogenetics in Oncology and Haematology
Wikipedia	http://en.wikipedia.org/wiki/CXCL1

Intellectual Property for CXCL1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for CXCL1 gene:
Search GeneIP for patents involving CXCL1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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CXCL1 Gene

chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating...

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CXCL1 (Gene Symbol)
Chemokine (C-X-C Motif) Ligand 1 (Melanoma Growth Stimulating Activity, Alpha)
GRO1
MGSA
NAP-3
SCYB1
FSP
GROa
MGSA-A
Fibroblast Secretory Protein
GRO1 Oncogene (Melanoma Growth Stimulating Activity, Alpha)
Neutrophil-Activating Protein 3
GRO-Alpha(1-73)
C-X-C Motif Chemokine 1
GRO1 Oncogene (Melanoma Growth-Stimulating Activity)
Growth-Regulated Alpha Protein
Melanoma Growth Stimulatory Activity Alpha
MGSA Alpha
GRO
GROA
Melanoma Growth Stimulatory Activity

Shock Septic
Melanoma
Kaposi Sarcoma
BREAST CARCINOMA
Encephalomyelitis
Colon Cancer
Vasculitis
sepsis
Hyperplasia
Meningitis Bacterial
atherosclerotic plaque
Colitis Ulcerative
Astrocytoma
Polyps
Carcinoma
Osteoarthritis
COLON CARCINOMA
Leukemia
Alzheimers Disease
Atherosclerosis
Breast Cancer
Neovascularization
NSCLC
primary tumor
Asthma
AIDS
Cancer
Inflammatory Bowel Diseases
Pathological Processes
Meningitis
Ovarian Cancer
Shock
Response Acute Phase
Bronchoalveolar Lavage Fluid
Nasal Polyps
Adenoma
Bleeding
Multiple Sclerosis
Inflammation
Gastritis
Carcinoma Squamous Cell
immunodeficiency
Psoriasis
STROKE
Rheumatoid Arthritis
Pneumonia
prostate cancer
Keratitis
Tumors
Respiratory Distress Syndrome Adult
Metastasis
Necrosis
Duodenal Ulcer
Tonsillitis
virus infection
Peptic Ulcer
Arthritis
FIBROSIS IDIOPATHIC PULMONARY

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CXCL1 Gene

chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating...

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