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CXCL1 Gene

protein-coding GIFtS: 62
GCID: GC04P074724

Chemokine (C-X-C Motif) Ligand 1 (Melanoma Growth Stimulating...

(Previous names: GRO1 oncogene (melanoma growth stimulating activity, alpha),...)
(Previous symbols: MGSA, GRO1, FSP)

Microbiology & Infectious Diseases Congress

See related diseases
at

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Chemokine (C-X-C Motif) Ligand 1 (Melanoma Growth Stimulating Activity, Alpha)¹ ²		C-X-C Motif Chemokine 1² ³
GRO1¹ ² ³ ⁵		GROa²
MGSA¹ ² ³ ⁵		MGSA-a²
FSP¹ ²		GRO1 Oncogene (Melanoma Growth-Stimulating Activity)²
Fibroblast Secretory Protein¹ ²		Growth-Regulated Alpha Protein²
GRO1 Oncogene (Melanoma Growth Stimulating Activity, Alpha)¹ ²		Melanoma Growth Stimulatory Activity Alpha²
Neutrophil-Activating Protein 3² ³		MGSA Alpha²
GRO-alpha(1-73)² ³		GRO³
NAP-3² ³		GROA³
SCYB1² ³		Melanoma Growth Stimulatory Activity³

External Ids:	HGNC: 4602¹	Entrez Gene: 2919²	Ensembl: ENSG00000163739⁷	OMIM: 155730⁵	UniProtKB: P09341³

ORGUL members:

Export aliases for CXCL1 gene to outside databases

Previous GC identifers: GC04P074974 GC04P075135 GC04P075201 GC04P075100 GC04P070546

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for CXCL1 Gene:

This gene encodes a member of the CXC subfamily of chemokines. The encoded protein is a secreted growth factor

that signal through the G-protein coupled receptor, CXC receptor 2. This protein plays a role in inflammation and

as a chemoattractant for neutrophils. Aberrant expression this protein is associated with the growth and

progression of certain tumors. A naturally occurring processed form of this protein has increased chemotactic

activity. Alternate splicing results in coding and non-coding variants of this gene. A pseudogene of this gene is

found on chromosome 4. (provided by RefSeq, Jan 2012)

GeneCards Summary for CXCL1 Gene:

CXCL1 (chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)) is a protein-coding gene. Diseases associated with CXCL1 include alcoholic neuropathy, and tonsillitis. GO annotations related to this gene include chemokine activity and receptor binding. An important paralog of this gene is PPBP.

UniProtKB/Swiss-Prot: GROA_HUMAN, P09341

Function: Has chemotactic activity for neutrophils. May play a role in inflammation and exerts its effects on

endothelial cells in an autocrine fashion. In vitro, the processed forms GRO-alpha(4-73), GRO-alpha(5-73) and

GRO-alpha(6-73) show a 30-fold higher chemotactic activity

Gene Wiki entry for CXCL1 Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:

NC_000004.12 NC_018915.2 NT_016354.20

Regulatory elements:

Regulatory transcription factor binding sites in the CXCL1 gene promoter:
Bach1 C/EBPbeta STAT1 AML1a NF-kappaB2 MyoD STAT1beta NF-kappaB1 Evi-1 STAT1alpha
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CXCL1 promoter sequence

Search Chromatin IP Primers for CXCL1

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CXCL1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q21 Ensembl cytogenetic band: 4q13.3 HGNC cytogenetic band: 4q13.3

CXCL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CXCL1 gene location

GeneLoc information about chromosome 4 GeneLoc Exon Structure

GeneLoc location for GC04P074724: view genomic region (about GC identifiers)

Start:	74,735,109 bp from pter	End:	74,736,959 bp from pter
Size:	1,851 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: GROA_HUMAN, P09341 (See protein sequence)

Recommended Name: Growth-regulated alpha protein precursor

Size: 107 amino acids; 11301 Da

4 PDB 3D structures from and Proteopedia for CXCL1:

1MGS (3D)

1MSG (3D)

1MSH (3D)

1ROD (3D)

Secondary accessions: Q9UCR7

Explore the universe of human proteins at neXtProt for CXCL1: NX_P09341

Explore proteomics data for CXCL1 at MOPED

Post-translational modifications:

N-terminal processed forms GRO-alpha(4-73), GRO-alpha(5-73) and GRO-alpha(6-73) are produced by proteolytic

cleavage after secretion from peripheral blood monocytes¹

Modification sites at neXtProt

See CXCL1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001502.1

ENSEMBL proteins:

ENSP00000379110

Reactome Protein details: P09341

CXCL1 Human Recombinant Protein Products:

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	Novus Biologicals CXCL1 Proteins Novus Biologicals CXCL1 Lysates
	Sino Biological Recombinant Protein for CXCL1 Browse Sino Biological Cell Lysates
	ProSpec Recombinant Protein for CXCL1
	Browse Proteins at Cloud-Clone Corp.

CXCL1 Antibody Products:

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	Abcam antibodies for CXCL1
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	ThermoFisher Antibodies for CXCL1
	LSBio Antibodies in human, mouse, rat for CXCL1

CXCL1 Assay Products:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Assay Services for CXCL1
	R&D Systems ELISAs for CXCL1 (CXCL1/GRO alpha/KC/CINC-1) (see all)
	GenScript Custom Assay Services for CXCL1
	Enzo Life Sciences assays for CXCL1
	Browse ELISAs at Cloud-Clone Corp. Browse CLIAs at Cloud-Clone Corp.

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:

ENDOLIG: Endogenous ligands

3 InterPro protein domains:

IPR001811 Chemokine_IL8-like_dom

IPR001089 Chemokine_CXC

IPR018048 Chemokine_CXC_CS

Graphical View of Domain Structure for InterPro Entry P09341

ProtoNet protein and cluster: P09341

1 Blocks protein domain: IPB002473 Interleukin-8 signature

UniProtKB/Swiss-Prot: GROA_HUMAN, P09341

Similarity: Belongs to the intercrine alpha (chemokine CxC) family

CXCL1 for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

UniProtKB/Swiss-Prot Summary: GROA_HUMAN, P09341

Function: Has chemotactic activity for neutrophils. May play a role in inflammation and exerts its effects on

endothelial cells in an autocrine fashion. In vitro, the processed forms GRO-alpha(4-73), GRO-alpha(5-73) and

GRO-alpha(6-73) show a 30-fold higher chemotactic activity

Gene Ontology (GO): 4 molecular function terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005102	receptor binding	TAS	10820279
GO:0008009	chemokine activity	IEA	--
GO:0008047	enzyme activator activity	TAS	9079638
GO:0008083	growth factor activity	IEA	--

CXCL1 for ontologies About GeneDecksing

Phenotypes:
2 GenomeRNAi human phenotypes for CXCL1:

Decreased focal adhesion (FA)

Metaphase cells

1 MGI mutant phenotype (inferred from 1 allele) (MGI details for Cxcl1):

cardiovascular system

CXCL1 for phenotypes About GeneDecksing

Animal Models:
MGI mouse knock-out Cxcl1^tm1Wabo for CXCL1

inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CXCL1

inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for CXCL1

genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CXCL1

genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for CXCL1

miRNA Products:		miRTarBase miRNAs that target CXCL1: hsa-mir-1 (MIRT023999), hsa-mir-124-3p (MIRT023084)

		Block miRNA regulation of human, mouse, rat CXCL1 using miScript Target Protectors
		7 qRT-PCR Assays for microRNAs that regulate CXCL1:
		hsa-miR-3163 hsa-miR-607 hsa-miR-873 hsa-miR-641 hsa-miR-539 hsa-miR-3662 hsa-miR-3617
		SwitchGear 3'UTR luciferase reporter plasmid: CXCL1 3' UTR sequence

Inhib. RNA Products:		OriGene RNAi products in human, mouse, rat for CXCL1
		Predesigned siRNA for gene silencing in human, mouse, rat CXCL1

Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for CXCL1

Clone Products:		OriGene clones in human, mouse for CXCL1 (see all 7) OriGene ORF clones in mouse, rat for CXCL1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: CXCL1 (NM_001511)
		Sino Biological Human cDNA Clone for CXCL1
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CXCL1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CXCL1

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for CXCL1
		Browse ESI BIO Cell Lines and PureStem Progenitors for CXCL1

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CXCL1

(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot

GROA_HUMAN, P09341: Secreted

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
extracellular	5
nucleus	2
cytoskeleton	1
plasma membrane	1

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Gene Ontology (GO): 2 cellular component terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	TAS	--
GO:0005615	extracellular space	IEA	--

CXCL1 for ontologies About GeneDecksing

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for CXCL1 About (see all 21)

See pathways by source

SuperPath

Selected contained pathways About (see all per SuperPath)

PEDF Induced Signaling

MIF Regulation of Innate Immune Cells	0.94	IL-6 Pathway	0.61
MIF Mediated Glucocorticoid Regulation	0.94	STAT3 Pathway	0.47
PEDF Induced Signaling	0.73	Endothelin-1 Signaling Pathway	0.46
all-trans-Retinoic Acid Signaling in Brain	0.71	Cytokine-cytokine receptor interaction	0.43

Chemokine Superfamily: Human/Mouse Ligand-Receptor Interactions

Chemokine receptors bind chemokines

0.81

Chemokine Superfamily: Human/Mouse Ligand-Receptor Interactions

0.81

Chemokine Signaling

Chemokine signaling pathway

0.33

Chemokine Signaling

0.33

Peptide ligand-binding receptors

	Class A/1 (Rhodopsin-like receptors)	0.71			Peptide ligand-binding receptors	0.60
	GPCR ligand binding	0.71			G alpha (i) signalling events	0.44

Signaling by GPCR

	Signaling by GPCR	0.90			Signal Transduction	0.58
	GPCR downstream signaling	0.90

Pathways by source See SuperPaths
Show all pathways

1 R&D Systems Pathway for CXCL1

Chemokine Superfamily: Human/Mouse Ligand-Receptor Interactions

Selected Downloadable PowerPoint Slides of GeneGlobe Pathway Central Maps for CXCL1 (see all 17)

	Endothelin-1 Signaling Pathway
	Molecular Mechanisms of Cancer
	Antioxidant Action of Vitamin-C
	Transendothelial Migration of Leukocytes
	MIF Mediated Glucocorticoid Regulation

2 GeneGo (Thomson Reuters) Pathways for CXCL1

	Cytokine production by Th17 cells in CF (Mouse model)
	Cytokine production by Th17 cells in CF

4 BioSystems Pathways for CXCL1

	Cytokines and Inflammatory Response
	Senescence and Autophagy
	Spinal Cord Injury
	IL23-mediated signaling events

2 Reactome Pathways for CXCL1

	Chemokine receptors bind chemokines
	G alpha (i) signalling events

Selected Kegg Pathways (Kegg details for CXCL1) (see all 9):

	Cytokine-cytokine receptor interaction
	Chemokine signaling pathway
	NOD-like receptor signaling pathway
	TNF signaling pathway
	Epithelial cell signaling in Helicobacter pylori infection

CXCL1 for pathways About GeneDecksing

Pathway & Disease-focused RT² Profiler PCR Arrays including CXCL1 (see all 16):

Neurogenesis in human mouse rat

Nephrotoxicity in human mouse rat

Growth Factors in human mouse rat

NFKB Signaling Targets in human mouse rat

Wound Healing in human mouse rat

Interactions:

GeneGlobe Interaction Network for CXCL1

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

Selected Interacting proteins for CXCL1 (P09341³ ENSP00000379110⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 163)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
CXCR2	P25025³, ENSP00000319635⁴	I2D: score=2 STRING: ENSP00000319635
MMP9	P14780³, ENSP00000361405⁴	I2D: score=1 STRING: ENSP00000361405
CXCR1	P25024³, ENSP00000295683⁴	I2D: score=2 STRING: ENSP00000295683
DARC	Q16570³, ENSP00000357103⁴	I2D: score=3 STRING: ENSP00000357103
HIPK2	Q9H2X6³	I2D: score=1

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Gene Ontology (GO): Selected biological process terms (see all 12): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006935	chemotaxis	TAS	10820279
GO:0006954	inflammatory response	IEA	--
GO:0006955	immune response	IEA	--
GO:0007165	signal transduction	TAS	10820279
GO:0007186	G-protein coupled receptor signaling pathway	TAS	10820279

CXCL1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse compounds at ApexBio

Browse Tocris compounds for CXCL1 (GROA)

Selected Novoseek inferred chemical compound relationships for CXCL1 gene (see all 46) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
groalpha	97.3	249	16510595 (11), 11470861 (9), 9641651 (9), 11495082 (8) (see all 68)
grogamma	92.2	12	8702798 (4), 9553055 (2), 10695618 (1), 9054580 (1) (see all 7)
rantes	87.6	132	10881738 (6), 12915769 (5), 12620497 (4), 10464551 (3) (see all 86)
grobeta	87.4	14	8702798 (4), 16540656 (3), 9553055 (2), 10695618 (1) (see all 7)
ppbp	72.9	3	7698025 (1), 10343098 (1), 9465307 (1)
ccl3	68.3	10	17023518 (2), 18565769 (2), 12851650 (1), 19162037 (1) (see all 8)
tarc	50.7	3	11533168 (1), 15975968 (1), 16316467 (1)
vegf	36.7	21	18832182 (3), 19176759 (3), 15958549 (2), 17406066 (1) (see all 14)
sulfapyridine	36.5	2	12231210 (2)
leukotriene b4	28.4	14	18576322 (5), 18515326 (1), 20008148 (1), 9353042 (1) (see all 6)

CXCL1 for compounds About GeneDecksing

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for CXCL1 gene:

NM_001511.3

Unigene Cluster for CXCL1:

Chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)

Hs.789 [show with all ESTs]

Unigene Representative Sequence: NR_046035

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000509101 ENST00000395761(uc003hhh.2)

Congresses - knowledge worth sharing:
European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

miRNA Products:		Block miRNA regulation of human, mouse, rat CXCL1 using miScript Target Protectors
		7 qRT-PCR Assays for microRNAs that regulate CXCL1:
		hsa-miR-3163 hsa-miR-607 hsa-miR-873 hsa-miR-641 hsa-miR-539 hsa-miR-3662 hsa-miR-3617
		SwitchGear 3'UTR luciferase reporter plasmid: CXCL1 3' UTR sequence

Inhib. RNA Products:		OriGene RNAi products in human, mouse, rat for CXCL1
		Predesigned siRNA for gene silencing in human, mouse, rat CXCL1

Clone Products:		OriGene clones in human, mouse for CXCL1 (see all 7) OriGene ORF clones in mouse, rat for CXCL1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: CXCL1 (NM_001511)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CXCL1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CXCL1

Primer Products:		OriGene qSTAR qPCR primer pairs in human, mouse for CXCL1
		Pre-validated RT² qPCR Primer Assay in human, mouse, rat CXCL1
		QuantiTect SYBR Green Assays in human, mouse, rat CXCL1
		QuantiFast Probe-based Assays in human, mouse, rat CXCL1

Additional mRNA sequence:

BC011976.1 BT006880.1 J03561.1 NR_046035.1 X12510.1

3 DOTS entries:

DT.446046 DT.100777292 DT.121241560

Selected AceView cDNA sequences (see all 94):

D82649 CA438155 AI609640 BQ000742 CB140372 AI362592 AA315570 BU626840

CB149087 BF000107 BQ021711 BM737792 BM994730 CA307413 NM_001511 X12510

BC011976 AW261997 BM984075 AI749188 AI346410 BM771312 BP337762 BG491425

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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CXCL1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: TTGAAACTTT

About this image

CXCL1 expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database
selected tissues (see all 11) fully expand


Mesenchymal Stem Cells
Placenta-derived mesenchymal stem cells (family)

Blood (Cardiovascular System) fully expand to see all 3 entries
Monocytes Peripheral Blood

Bone (Muscoskeletal System) fully expand to see all 2 entries
Bone marrow-derived mesenchymal stem cells

Adipose (Muscoskeletal System) fully expand to see all 2 entries
Body Subcutaneous White Adipose

Placenta (Extraembryonic Tissues) fully expand to see all 2 entries
Placenta-derived mesenchymal stem cells (family)

CXCL1 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

About this image

CXCL1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.789

Pathway & Disease-focused RT² Profiler PCR Arrays including CXCL1 (see all 16):

Neurogenesis in human mouse rat

Nephrotoxicity in human mouse rat

Growth Factors in human mouse rat

NFKB Signaling Targets in human mouse rat

Wound Healing in human mouse rat

Primer Products:		OriGene qSTAR qPCR primer pairs in human, mouse for CXCL1
		Pre-validated RT² qPCR Primer Assay in human, mouse, rat CXCL1
		QuantiTect SYBR Green Assays in human, mouse, rat CXCL1
		QuantiFast Probe-based Assays in human, mouse, rat CXCL1

In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CXCL1

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for CXCL1 gene from Selected species (see all 7) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Cxcl1⁵	chemokine (C-X-C motif) ligand 1	--		5 (44.78 cM) 90891241
chicken (Gallus gallus)	Aves	--	Uncharacterized protein	40(a)	1 → many	4(50379773-50381069)
lizard (Anolis carolinensis)	Reptilia	--	Uncharacterized protein	38(a)	1 → many	6(60123888-60134622)

ENSEMBL Gene Tree for CXCL1 (if available)
TreeFam Gene Tree for CXCL1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for CXCL1 gene

PPBP² PF4² PF4V1² CXCL6² CXCL3² CXCL5² CXCL2² IL8²

13 SIMAP similar genes for CXCL1 using alignment to 1 protein entry: GROA_HUMAN:

MGSA alpha CXCL3 CXCL2 PPBP CXCL5 CXCL6

CXCL9 PF4 PF4V1 CXCL10 IL8 CXCL11

CXCL12

CXCL1 for paralogs About GeneDecksing

1 Pseudogenes.org Pseudogene for CXCL1
PGOHUM00000245590

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 4 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs182409142^1,2		--	74733122(+)	`AGAAAC/TAATTG`	2	--	us2k¹		0	--	--	--	--
rs186914467^1,2		--	74733165(+)	`GTCTGC/TTTTAA`	2	--	us2k¹		0	--	--	--	--
rs78572627^1,2	F	--	74733296(+)	`ATTCTG/ATCTTC`	2	--	us2k¹		1		WA	118
rs73828896^1,2	C	--	74733345(+)	`TATATG/AGTGTT`	2	--	us2k¹		2		WA	120
rs192442248^1,2	C	--	74733351(+)	`GTGTTA/GTATAC`	2	--	us2k¹		0	--	--	--	--
rs185093233^1,2		--	74733454(+)	`ATATAA/TATATA`	2	--	us2k¹		0	--	--	--	--
rs4992978^1,2	C	--	74733474(+)	`ATATAT/AATATA`	2	--	us2k¹ tfbs³		1		NA	2
rs6825295^1,2	C	--	74733482(+)	`atataA/Tatata`	2	--	us2k¹ tfbs³		0	--	--	--	--
rs28576170^1,2	C	--	74733482(+)	`ATATAT/AATATA`	2	--	us2k¹ tfbs³		1		WA	2
rs28530514^1,2	C	--	74733555(+)	`TTTTTA/TTTAAA`	2	--	us2k¹ trp³		1		CSA	1

HapMap Linkage Disequilibrium report for CXCL1 (74735109 - 74736959 bp)

Structural Variations
Database of Genomic Variants (DGV) 1 variation for CXCL1: About this table

Variant ID	Type	Subtype	PubMed ID
nsv525980	CNV	Gain	19592680

Site Specific Mutation Identification with PCR Assays

SeqTarget long-range PCR primers for resequencing CXCL1

DNA2.0 Custom Variant and Variant Library Synthesis for CXCL1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 155730 OMIM disorders: --

Selected diseases for CXCL1 (see all 96):
About MalaCards

alcoholic neuropathy tonsillitis peptic ulcer melanoma

yellow fever adult respiratory distress syndrome keratitis duodenal ulcer

polymyalgia rheumatica meningitis h. pylori infection klebsiella

bacterial meningitis endometritis duodenitis lymphangioleiomyomatosis

legionellosis chronic granulomatous disease essential thrombocythemia kaposi's sarcoma

2 diseases from the University of Copenhagen DISEASES database for CXCL1:

Melanoma Lung disease

CXCL1 for disorders About GeneDecksing

Congresses - knowledge worth sharing:
The International Symposium on Pneumococci and Pneumococcal Diseases (ISPPD) 9 - 13 March 2014
Alzheimer's & Parkinson's Diseases Congress (ADPD) 18 - 22 March 2015

Selected Novoseek inferred disease relationships for CXCL1 gene (see all 58) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
inflammation	65.4	25	9730682 (1), 10392755 (1), 11371564 (1), 12549928 (1) (see all 23)
necrosis	58.3	35	9215253 (2), 1744577 (1), 8245503 (1), 9143736 (1) (see all 32)
melanoma	50.4	46	11406569 (2), 18056965 (2), 11719444 (2), 16098041 (2) (see all 29)
nasal polyps	47.3	7	16608789 (4), 10889487 (2), 17703097 (1)
tumors	44.1	68	18451219 (4), 16618733 (3), 19276354 (2), 12427307 (2) (see all 46)
bronchoalveolar lavage fluid	41.5	4	19155472 (1), 14662873 (1), 7582292 (1)
rheumatoid arthritis	39.1	6	10437780 (2), 10881738 (2), 9232436 (1), 18576322 (1)
gastritis	35	1	15557597 (1)
pneumonia	25.5	1	18345025 (1)
response acute phase	25.2	1	11916915 (1)

Genetic Association Database (GAD): CXCL1
Human Genome Epidemiology (HuGE) Navigator: CXCL1 (8 documents)

Export disorders for CXCL1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for CXCL1 gene, integrated from 10 sources (see all 558):
(articles sorted by number of sources associating them with CXCL1)

Utopia: connect your pdf to the dynamic
world of online information

Association study of the chemokine, CXC motif, ligand 1 (CXCL1) gene with sporadic Alzheimer's disease in a Japanese population. (PubMed id 15843053)^{1, 4, 9} Tamura Y....Hohjoh H. (Neurosci. Lett. 2005)
Isolation of the CXC chemokines ENA-78, GRO alpha and GRO gamma from tumor cells and leukocytes reveals NH2-terminal heterogeneity. Functional comparison of different natural isoforms. (PubMed id 10095777)^{1, 2, 9} Wuyts A.... Van Damme J. (Eur. J. Biochem. 1999)
Identification of three related human GRO genes encoding cytokine functions. (PubMed id 2217207)^{1, 3, 9} Haskill S.... Sager R. (Proc. Natl. Acad. Sci. U.S.A. 1990)
Lipopolysaccharide-stimulated human monocytes secrete, apart from neutrophil-activating peptide 1/interleukin 8, a second neutrophil- activating protein. NH2-terminal amino acid sequence identity with melanoma growth stimulatory activity. (PubMed id 2182761)^{1, 2, 9} Schroeder J.-M.... Christophers E. (J. Exp. Med. 1990)
Evaluation of candidate stromal epithelial cross-talk genes identifies association between risk of serous ovarian cancer and TERT, a cancer susceptibility "hot-spot". (PubMed id 20628624)^{1, 4} Johnatty S.E.... . (PLoS Genet. 2010)
Interleukin-9 polymorphism in infants with respiratory syncytial virus infection: an opposite effect in boys and girls. (PubMed id 20503287)^{1, 4} Schuurhof A....Janssen R. (Pediatr. Pulmonol. 2010)
Genetic susceptibility to respiratory syncytial virus bronchiolitis in preterm children is associated with airway remodeling genes and innate immune genes. (PubMed id 19258923)^{1, 4} Siezen C.L....Janssen R. (Pediatr. Infect. Dis. J. 2009)
Genetic susceptibility to respiratory syncytial virus bronchiolitis is predominantly associated with innate immune genes. (PubMed id 17703412)^{1, 4} Janssen R....Hoebee B. (J. Infect. Dis. 2007)
Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)^{1, 2} Zhang Z. and Henzel W.J. (Protein Sci. 2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S.... Malek J. (Genome Res. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 2919	HGNC: 4602	AceView: CXCL1	Ensembl:ENSG00000163739	euGenes: HUgn2919
ECgene: CXCL1	Kegg: 2919	H-InvDB: CXCL1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for CXCL1	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for CXCL1	Genetics and Cytogenetics in Oncology and Haematology
Wikipedia	http://en.wikipedia.org/wiki/CXCL1

Intellectual Property for CXCL1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for CXCL1 gene:
Search GeneIP for patents involving CXCL1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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CXCL1 Gene

Chemokine (C-X-C Motif) Ligand 1 (Melanoma Growth Stimulating...

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CXCL1 (Gene Symbol)
Chemokine (C-X-C Motif) Ligand 1 (Melanoma Growth Stimulating Activity, Alpha)
GRO1
MGSA
FSP
Fibroblast Secretory Protein
GRO1 Oncogene (Melanoma Growth Stimulating Activity, Alpha)
Neutrophil-Activating Protein 3
GRO-alpha(1-73)
NAP-3
SCYB1
C-X-C Motif Chemokine 1
GROa
MGSA-a
GRO1 Oncogene (Melanoma Growth-Stimulating Activity)
Growth-Regulated Alpha Protein
Melanoma Growth Stimulatory Activity Alpha
MGSA Alpha
GRO
GROA
Melanoma Growth Stimulatory Activity

Shock Septic
Melanoma
Kaposi Sarcoma
BREAST CARCINOMA
Encephalomyelitis
Colon Cancer
Vasculitis
sepsis
Hyperplasia
Meningitis Bacterial
atherosclerotic plaque
Colitis Ulcerative
Astrocytoma
Polyps
Carcinoma
Osteoarthritis
COLON CARCINOMA
Leukemia
Alzheimers Disease
Atherosclerosis
Breast Cancer
Neovascularization
NSCLC
primary tumor
Asthma
AIDS
Cancer
Inflammatory Bowel Diseases
Pathological Processes
Meningitis
Ovarian Cancer
Shock
Response Acute Phase
Bronchoalveolar Lavage Fluid
Nasal Polyps
Adenoma
Bleeding
Multiple Sclerosis
Inflammation
Gastritis
Carcinoma Squamous Cell
immunodeficiency
Psoriasis
STROKE
Rheumatoid Arthritis
Pneumonia
prostate cancer
Keratitis
Tumors
Respiratory Distress Syndrome Adult
Metastasis
Necrosis
Duodenal Ulcer
Tonsillitis
virus infection
Peptic Ulcer
Arthritis
FIBROSIS IDIOPATHIC PULMONARY

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CXCL1 Gene

Chemokine (C-X-C Motif) Ligand 1 (Melanoma Growth Stimulating...

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