CXCL1 Gene
protein-coding GIFtS: 60
GC04P074974
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chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (Previous names: GRO1 oncogene (melanoma growth stimulating activity, alpha), fibroblast secretory protein ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: MGSA, GRO1, FSP)
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Aliases & Descriptions for CXCL1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
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| Aliases |
|---|
| FSP 2 | | GRO 3 | | GRO-alpha(1-73) 3 | | GRO1 2, 3, 5 | | GROA 3 | | GROa 1, 2 | | MGSA 2, 3, 5 | | MGSA-a 1, 2 | | NAP-3 1, 2, 3 | | SCYB1 1, 2, 3 |
| | | Descriptions |
|---|
| C-X-C motif chemokine 1 3 | | GRO1 oncogene (melanoma growth stimulating activity, alpha) 1, 2 | | GRO1 oncogene (melanoma growth-stimulating activity) 2 | | MGSA alpha 2 | | Melanoma growth stimulatory activity 3 | | Neutrophil-activating protein 3 3 | | chemokine (C-X-C motif) ligand 1 2 | chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) 2 | | fibroblast secretory protein 1, 2 | | melanoma growth stimulatory activity alpha 2 |
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| | Search outside databases for aliases for CXCL1 genePrevious GC identifers: GC04P074724 GC04P075135 GC04P075201 GC04P075100 |
Summaries for CXCL1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CXCL1: Chemokines are a group of small (approximately 8 to 14 kD), mostly basic, structurally related molecules that regulate cell trafficking of various types of leukocytes through interactions with a subset of 7-transmembrane, G protein-coupled receptors. Chemokines also play fundamental roles in the development, homeostasis, and function of the immune system, and they have effects on cells of the central nervous system as well as on endothelial cells involved in angiogenesis or angiostasis. Chemokines are divided into 2 major subfamilies, CXC and CC, based on the arrangement of the first 2 of the 4 conserved cysteine residues; the 2 cysteines are separated by a single amino acid in CXC chemokines and are adjacent in CC chemokines. CXC chemokines are further subdivided into ELR and non-ELR types based on the presence or absence of a glu-leu-arg sequence adjacent and N terminal to the CXC motif. ELR types are chemotactic for neutrophils, while non-ELR types are chemotactic for lymphocytes.[supplied by OMIM] UniProtKB/Swiss-Prot: GROA_HUMAN, P09341Function: Has chemotactic activity for neutrophils. May play a role in inflammation and exerts its effects on endothelial cells in an autocrine fashion. In vitro, the processed forms GRO-alpha(4-73), GRO-alpha(5-73) and GRO-alpha(6-73) show a 30-fold higher chemotactic activityGene Wiki entry for CXCL1 |
Genomic Location for CXCL1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CXCL1 gene 
Entrez Gene cytogenetic band: 4q21 Ensembl cytogenetic band: 4q13.3 HGNC cytogenetic band: 4q13.3CXCL1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04P074974:
(about GC identifiers)
Start:
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74,953,973 bp from pter |
End:
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74,968,249 bp from pter |
Size:
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14,277 bases |
Orientation:
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plus strand |
RefSeq DNA sequence:- NC_000004.10 NT_006216.14
| Proteins for CXCL1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: GROA_HUMAN, P09341 (See
protein sequence)Recommended Name: Growth-regulated alpha protein precursor Size: 107 amino acids; 11301 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :1MGS (3D)
 1MSG (3D)
 1MSH (3D)
 1ROD (3D)
 
Secondary accessions: Q9UCR7Post-translational modifications:
N-terminal processed forms GRO-alpha(4-73), GRO-alpha(5-73) and GRO-alpha(6-73) are produced by proteolytic cleavage after secretion from peripheral blood monocytes1
REFSEQ proteins: NP_001502.1
ENSEMBL proteins: ENSP00000296031
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CXCL1: Assays for CXCL1: | Protein
Domains/ Families for CXCL1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P09341
ProtoNet protein and cluster: P09341 1 Blocks protein family: IPB002473 Interleukin-8 signature
UniProtKB/Swiss-Prot: GROA_HUMAN, P09341Similarity: Belongs to the intercrine alpha (chemokine CxC) family | Gene Function for CXCL1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001511
Applied Biosystems Silencer® siRNAs for CXCL1
Sigma-Aldrich siRNA and siRNA Panels for CXCL1  Sigma-Aldrich shRNA for CXCL1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001511                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001511                                  untagged cDNA clones in CMV expression vector (see all 2): NM_001511 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001511
UniProtKB/Swiss-Prot: GROA_HUMAN, P09341Function: Has chemotactic activity for neutrophils. May play a role in inflammation and exerts its effects on endothelial cells in an autocrine fashion. In vitro, the processed forms GRO-alpha(4-73), GRO-alpha(5-73) and GRO-alpha(6-73) show a 30-fold higher chemotactic activity1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Cxcl1):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for CXCL1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 4 Sigma-Aldrich "Your Favorite Gene" Pathways for CXCL1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for CXCL1 
5/75 Interacting proteins for CXCL1 (ENSP000002960313) via UniProtKB, MINT, and/or STRING (see all 75
)About this table
5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
): About this table
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Drugs & Compounds for CXCL1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CXCL1 10/24 Novoseek chemical compound relationships for CXCL1 gene (see all 24
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| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| groalpha |
97.31 |
233 |
16510595 (11), 11470861 (9), 9641651 (9), 11495082 (8) (see all 64) |
| grogamma |
92.71 |
12 |
8702798 (4), 9553055 (2), 10695618 (1), 9054580 (1) (see all 7) |
| rantes |
87.82 |
122 |
10881738 (6), 12915769 (5), 12620497 (4), 10464551 (3) (see all 82) |
| grobeta |
87.07 |
13 |
8702798 (4), 16540656 (3), 9553055 (2), 10695618 (1) (see all 6) |
| ppbp |
74.12 |
3 |
7698025 (1), 10343098 (1), 9465307 (1) |
| ccl3 |
68.67 |
10 |
17023518 (2), 18565769 (2), 12851650 (1), 19162037 (1) (see all 8) |
| tarc |
52.56 |
3 |
11533168 (1), 15975968 (1), 16316467 (1) |
| matrigel |
28.29 |
2 |
15880583 (1), 17583554 (1) |
| cytochalasin |
27.11 |
1 |
2182761 (1) |
| leukotriene b4 |
24.23 |
11 |
18576322 (5), 18515326 (1), 9353042 (1), 7639692 (1) (see all 5) |
About this table
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Transcripts for CXCL1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001511
Sigma-Aldrich siRNA and siRNA Panels for CXCL1  Sigma-Aldrich shRNA for CXCL1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001511 REFSEQ mRNAs for CXCL1 gene: NM_001511.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001511               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001511                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001511                                  untagged cDNA clones in CMV expression vector (see all 2): NM_001511  Additional cDNA sequence: BC011976.1 BT006880.1 J03561.1 X12510.1 3 DOTS entries: DT.446046 DT.100777292 DT.121241560 24/94 AceView cDNA sequences (see all 94
):D82649 BU626840 CA307413 BQ000742 BQ021711 AW261997 AA315570 BC011976 CA438155 CB149087 AI362592 CB140372 X12510 BM737792 AI609640 BM994730 NM_001511 BF000107 BM984075 BM771312 BM762272 AW081601 J03561 BF437778
highest scoring ESTs for CXCL1:AA054552 AA315570 AA381180 AA469039 AA530972 AA594627 AA627560 AA627993 AA936997 AI148274 Unigene Cluster for CXCL1: Chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) Hs.789 [show with all ESTs]Unigene Representative Sequence: BF032655
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000296031
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Expression for CXCL1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CXCL1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CXCL1
1 / 2 / 3 3 probe-sets matching CXCL1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTGAAACTTT
SOURCE GeneReport for Unigene cluster: Hs.789
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Orthologs for CXCL1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for CXCL1 gene from 3 species
About this table Species with no ortholog for CXCL1
ENSEMBL Gene Tree for CXCL1 | Paralogs for CXCL1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CXCL1 gene
- PF42 PPBP2 PF4V12 CXCL62 CXCL32 CXCL52 CXCL22 IL82
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SNPs/Variants for CXCL1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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HapMap Linkage Disequilibrium images for CXCL1 (up to first 250kb)
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Disorders & Mutations for CXCL1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 155730
10/57 Novoseek disease relationships for CXCL1 gene (see all 57
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| inflammation |
64.48 |
23 |
9730682 (1), 10392755 (1), 11371564 (1), 12549928 (1) (see all 21) |
| necrosis |
56.44 |
33 |
9215253 (2), 1744577 (1), 8245503 (1), 9143736 (1) (see all 30) |
| melanoma |
50.85 |
45 |
11406569 (2), 18056965 (2), 11719444 (2), 16098041 (2) (see all 28) |
| nasal polyps |
49.47 |
7 |
16608789 (4), 10889487 (2), 17703097 (1) |
| tumors |
42.51 |
67 |
18451219 (4), 16618733 (3), 19276354 (2), 12427307 (2) (see all 45) |
| gastritis |
36.57 |
1 |
15557597 (1) |
| rheumatoid arthritis |
35.24 |
6 |
10437780 (2), 10881738 (2), 9232436 (1), 18576322 (1) |
| bronchoalveolar lavage fluid |
31.58 |
4 |
19155472 (1), 14662873 (1), 7582292 (1) |
| inflammatory bowel diseases |
25.01 |
2 |
11495082 (1), 18956592 (1) |
| pneumonia |
21.79 |
1 |
18345025 (1) |
About this table
Genetic Association Database: CXCL1 Human Genome Epidemiology Navigator: CXCL1 (4 documents)
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Medical News for CXCL1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CXCL1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/465 PubMed articles for CXCL1 gene (see all 465
):- Association study of the chemokine, CXC motif, ligand 1 (CXCL1) gene with sporadic Alzheimer's disease in a Japanese population. (PubMed id 15843053)1, 3, 6 Tamura Y....Hohjoh H. (2005)
- Isolation of the CXC chemokines ENA-78, GRO alpha and GRO gamma from tumor cells and leukocytes reveals NH2-terminal heterogeneity. Functional comparison of different natural isoforms. (PubMed id 10095777)1, 3, 4 Wuyts A.... Van Damme J. (1999)
- Identification of three related human GRO genes encoding cytokine functions. (PubMed id 2217207)1, 2, 3 Haskill S.... Sager R. (1990)
- Lipopolysaccharide-stimulated human monocytes secrete, apart from neutrophil-activating peptide 1/interleukin 8, a second neutrophil- activating protein. NH2-terminal amino acid sequence identity with melanoma growth stimulatory activity. (PubMed id 2182761)1, 3, 4 Schroeder J.-M.... Christophers E. (1990)
- Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)3, 4 Zhang Z. and Henzel W.J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The solution structure of melanoma growth stimulating activity. (PubMed id 8089846)3, 4 Fairbrother W.J.... Horuk R. (1994)
- Solution structure of GRO/melanoma growth stimulatory activity determined by 1H NMR spectroscopy. (PubMed id 7806518)3, 4 Kim K.S.... Sykes B.D. (1994)
- 1H assignment and secondary structure determination of human melanoma growth stimulating activity (MGSA) by NMR spectroscopy. (PubMed id 8397104)3, 4 Fairbrother W.J.... Horuk R. (1993)
- Nucleotide sequence of the human melanoma growth stimulatory activity (MGSA) gene. (PubMed id 2129556)3, 4 Baker N.E.... Richmond A. (1990)
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Search for CXCL1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing CXCL1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CXCL1
(According to HUGE)
About This Section
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Specialized Databases showing CXCL1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| About This Section
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| Services for CXCL1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for CXCL1:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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