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CWF19L1 Gene

protein-coding   GIFtS: 51
GCID: GC10M101982

CWF19-Like 1, Cell Cycle Control (S. Pombe)

  Search for CWF19L1
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
CWF19-Like 1, Cell Cycle Control (S. Pombe)1 2
CWF19-Like Protein 12

External Ids:    HGNC: 256131   Entrez Gene: 552802   Ensembl: ENSG000000954857   UniProtKB: Q69YN23   

Export aliases for CWF19L1 gene to outside databases

Previous GC identifers: GC10M101657 GC10M095621


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CWF19L1 Gene:
CWF19L1 (CWF19-like 1, cell cycle control (S. pombe)) is a protein-coding gene. An important paralog of this gene is CWF19L2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000010.10  NC_018921.2  NT_030059.14  
Regulatory elements:
   Regulatory transcription factor binding sites in the CWF19L1 gene promoter:
         Elk-1   ATF-2   CUTL1   FOXL1   YY1   MEF-2A   FOXO4   FOXJ2 (long isoform)   aMEF-2   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): CWF19L1 promoter sequence
   Search Chromatin IP Primers for CWF19L1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CWF19L1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q24.31   Ensembl cytogenetic band:  10q24.31   HGNC cytogenetic band: 10q24.31

CWF19L1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CWF19L1 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M101982:  view genomic region     (about GC identifiers)

Start:
101,992,055 bp from pter      End:
102,027,437 bp from pter
Size:
35,383 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: C19L1_HUMAN, Q69YN2 (See protein sequence)
Recommended Name: CWF19-like protein 1  
Size: 538 amino acids; 60619 Da
Sequence caution: Sequence=CAH72402.1; Type=Erroneous gene model prediction;
Secondary accessions: B4DHX1 D3DR66 Q5W0I3 Q96HC3 Q9H865 Q9NV13
Alternative splicing: 3 isoforms:  Q69YN2-1   Q69YN2-2   Q69YN2-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CWF19L1: NX_Q69YN2

Explore proteomics data for CWF19L1 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys483
  • Modification sites at PhosphoSitePlus

  • See CWF19L1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_060764.3  
    ENSEMBL proteins: 
     ENSP00000359405   ENSP00000326411  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR006768 Cwf19-like_C_dom-1
     IPR006767 Cwf19-like_C_dom-2
     IPR011146 HIT-like

    Graphical View of Domain Structure for InterPro Entry Q69YN2

    ProtoNet protein and cluster: Q69YN2

    1 Blocks protein domain: IPB006768 Protein similar to CwfJ

    UniProtKB/Swiss-Prot: C19L1_HUMAN, Q69YN2
    Similarity: Belongs to the CWF19 family


    Find genes that share domains with CWF19L1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0003824catalytic activity IEA--
         
    Find genes that share ontologies with CWF19L1           About GenesLikeMe


    Animal Models:
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    miRNA
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    miRTarBase miRNAs that target CWF19L1:
    hsa-mir-106b-5p (MIRT044327)

    Block miRNA regulation of human, mouse, rat CWF19L1 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate CWF19L1 (see all 14):
    hsa-miR-1290 hsa-miR-623 hsa-miR-3688-3p hsa-miR-409-3p hsa-miR-3647-3p hsa-miR-132 hsa-miR-583 hsa-miR-211
    SwitchGear 3'UTR luciferase reporter plasmidCWF19L1 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CWF19L1


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    golgi apparatus2
    nucleus2
    peroxisome1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--

    Find genes that share ontologies with CWF19L1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CWF19L1
    Interactions:

        Search GeneGlobe Interaction Network for CWF19L1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 16)

    Selected Interacting proteins for CWF19L1 (Q69YN22, 3 ENSP000003264114) via UniProtKB, MINT, STRING, and/or I2D (see all 21)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TOM1L1O756742, 3MINT-65518 I2D: score=5 
    DBR1Q9UK593, ENSP000002608034I2D: score=1 STRING: ENSP00000260803
    DDA1Q9BW613I2D: score=1 
    EEF2P136393I2D: score=1 
    NSUN2Q08J233I2D: score=1 
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with CWF19L1           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CWF19L1 (C19L1)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CWF19L1 gene: 
    NM_018294.4  

    Unigene Cluster for CWF19L1:

    CWF19-like 1, cell cycle control (S. pombe)
    Hs.215502  [show with all ESTs]
    Unigene Representative Sequence: AK055313
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000468709(uc001kqs.1) ENST00000482452 ENST00000478047 ENST00000370379
    ENST00000466955 ENST00000466408 ENST00000496796 ENST00000473842 ENST00000354105(uc001kqq.1 uc001kqr.1 uc001kqt.1 uc010qpn.1)

    miRNA
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    Block miRNA regulation of human, mouse, rat CWF19L1 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate CWF19L1 (see all 14):
    hsa-miR-1290 hsa-miR-623 hsa-miR-3688-3p hsa-miR-409-3p hsa-miR-3647-3p hsa-miR-132 hsa-miR-583 hsa-miR-211
    SwitchGear 3'UTR luciferase reporter plasmidCWF19L1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat CWF19L1
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    GenScript: all cDNA clones in your preferred vector: CWF19L1 (NM_018294)
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    OriGene qPCR primer pairs and template standards for CWF19L1
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat CWF19L1
      QuantiTect SYBR Green Assays in human, mouse, rat CWF19L1
      QuantiFast Probe-based Assays in human, mouse, rat CWF19L1

    Additional mRNA sequence: 

    AK000876.1 AK055313.1 AK097895.1 AK225590.1 AK295303.1 AL832515.1 

    17 DOTS entries:

    DT.100777952  DT.443013  DT.100811600  DT.121269183  DT.95275283  DT.100777950  DT.99986173  DT.440113 
    DT.99967903  DT.121269119  DT.91844284  DT.121269129  DT.121269145  DT.121269155  DT.92431837  DT.99932366 
    DT.121269126 

    Selected AceView cDNA sequences (see all 149):

    BM827722 CK430555 AA252743 AW401703 BM818086 BG503643 AA400626 AI340302 
    AU280189 AI888946 CD672837 AI370672 BG288853 BF061077 BI518796 AK001860 
    BX471305 BM550871 BM810541 BQ932343 AA400381 BQ182629 BU679686 BI551311 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for CWF19L1 (see all 11)    About this scheme

    ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e · 2f · 2g ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b ^ 11 ^ 12 ^
    SP1:                                            -     -                                               -                 -                                       
    SP2:                                            -     -           -     -                 -     -     -                 -                                       
    SP3:                                                                                -     -     -     -                 -                                       
    SP4:                                            -     -     -     -     -     -     -                 -                 -                                       
    SP5:                                                  -           -     -                             -                 -                                       

    ExUns: 13a · 13b ^ 14 ^ 15 ^ 16
    SP1:                              
    SP2:                              
    SP3:                              
    SP4:                              
    SP5:                              


    ECgene alternative splicing isoforms for CWF19L1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CWF19L1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    CWF19L1 Expression
    About this image

    CWF19L1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CWF19L1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.215502
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CWF19L1 gene from Selected species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Cwf19l11 , 5 CWF19-like 1, cell cycle control (S. pombe)1, 5 88.08(n)1
    89.39(a)1
      19 (36.72 cM)5
    725021  NM_001081077.11  NP_001074546.11 
     441086445 
    chicken
    (Gallus gallus)
    Aves CWF19L11 CWF19-like 1, cell cycle control (S. pombe) 68.28(n)
    71.27(a)
      101749626  XM_004941985.1  XP_004942042.1 
    lizard
    (Anolis carolinensis)
    Reptilia CWF19L16
    CWF19-like 1, cell cycle control (S. pombe)
    62(a)
    1 ↔ 1
    GL344514.1(7150-23574)
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC533072 hypothetical protein MGC53307 74.61(n)    BC042216.1 
    zebrafish
    (Danio rerio)
    Actinopterygii sbcb10042 sbcb1004 75.17(n)   387304  CD751696.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG77411 CG7741 47.71(n)
    40.39(a)
      36208  NM_136826.2  NP_610670.2 
    worm
    (Caenorhabditis elegans)
    Secernentea F17A9.21 F17A9.2 50.32(n)
    44.23(a)
      179000  NM_072176.3  NP_504577.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes (YGR093W)4 Putative protein of unconfirmed function; green fluorescent more   --   7(670388-671911) 852985  NP_011607.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT5G569001 AT5G56900 48.08(n)
    39.33(a)
      835792  NM_203216.2  NP_974945.2 
    rice
    (Oryza sativa)
    Liliopsida Os09g03640001 Os09g0364000 45.29(n)
    34.11(a)
      4346865  NM_001069532.1  NP_001062997.1 


    ENSEMBL Gene Tree for CWF19L1 (if available)
    TreeFam Gene Tree for CWF19L1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CWF19L1 gene
    CWF19L22  

    Find genes that share paralogs with CWF19L1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CWF19L1 (see all 807)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1468280691,2
    --101991612(+) CCTGTA/CACCAA 1 -- ds50010--------
    rs1405047691,2
    --101991763(+) CTCTGC/GGACAA 1 -- ds50010--------
    rs1442165161,2
    --101991867(+) ATCTAG/TGAATA 1 -- ds50010--------
    rs114460761,2
    C--101991882(+) AATGCT/-TTAAG 1 -- ds50012Minor allele frequency- -:0.00NA CSA 4
    rs1170749981,2
    C--101991885(+) TGCTTA/TAGAGA 1 -- ds50010--------
    rs1876797761,2
    --101991977(+) TGGGCC/TTAAAG 1 -- ds50010--------
    rs357072901,2
    F--101991988(+) CTCTAG/CCCCCT 1 -- ds50011Minor allele frequency- C:0.50NA 4
    rs1922355341,2
    --101992001(+) TATTAC/TACATA 1 -- ds50010--------
    rs1842106891,2
    --101992091(+) TAGTTG/TAAAGG 1 -- ut310--------
    rs1886220111,2
    --101992132(+) ACTTGA/GAGCTG 1 -- ut310--------

    HapMap Linkage Disequilibrium report for CWF19L1 (101992055 - 102027437 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for CWF19L1:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv516860CNV Loss19592680
    nsv895922CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with CWF19L1           About GenesLikeMe

    Genetic Association Database (GAD): CWF19L1
    Human Genome Epidemiology (HuGE) Navigator: CWF19L1 (2 documents)

    Export disorders for CWF19L1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CWF19L1 gene, integrated from 10 sources (see all 17):
    (articles sorted by number of sources associating them with CWF19L1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2, 3 Ota T.... Sugano S. (Nat. Genet. 2004)
    2. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PubMed id 19773279)1, 4 Hosgood H.D....Lan Q. (Occup Environ Med 2009)
    3. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PubMed id 16385451)1, 4 Grupe A....Goate A. (Am. J. Hum. Genet. 2006)
    4. Proteomic investigation of the interactome of FMNL1 in hematopoietic cells unveils a role in calcium-dependent membrane plasticity. (PubMed id 23182705)1 Han Y....Krackhardt A.M. (J Proteomics 2013)
    5. The ERLIN1-CHUK-CWF19L1 gene cluster influences liver fat deposition and hepatic inflammation in the NHLBI Family Heart Study. (PubMed id 23477746)1 Feitosa M.F....Borecki I.B. (Atherosclerosis 2013)
    6. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    8. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    9. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    10. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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      Query String
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    OMIM
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 55280 HGNC: 25613 AceView: CWF19L1 Ensembl:ENSG00000095485 euGenes: HUgn55280
    ECgene: CWF19L1 H-InvDB: CWF19L1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CWF19L1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CWF19L1 gene:
    Search GeneIP for patents involving CWF19L1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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