CUX2 Gene
protein-coding GIFtS : 51
GCID: GC12 P111471
cut-like homeobox 2 (Previous name: cut-like 2 (Drosophila) ) (Previous symbol: CUTL2 )
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Aliasesfor CUX2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Cut-Like Homeobox 2 1 2 Homeobox Protein Cux-22 3 CUTL21 2 3 Cut-Like 2 (Drosophila)1 CDP21 2 Homeobox Protein Cut-Like 22 KIAA02931 3
Export aliases for CUX2 gene to outside databases Previous GC identifers: GC12P109956 GC12P108667
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Summariesfor CUX2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CUX2 : This gene encodes a protein which contains three CUT domains and a homeodomain; both domains are DNA-binding motifs. A similar gene, whose gene product possesses different DNA-binding activities, is located on chromosome on chromosome 7. Two pseudogenes of this gene have been identified on chromosomes 10 and 4. (provided by RefSeq, Jan 2013) UniProtKB/Swiss-Prot: CUX2_HUMAN, O14529 Function : May be a transcription factor involved in neural specification. Binds to DNA in a sequence-specific manner(By similarity)
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Genomic Viewsfor CUX2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000012.11 NC_018923.1 NT_009775.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CUX2 gene promoter: STAT5B Pax-5 HTF IRF-1 HNF-4alpha2 CUTL1 Cdc5 HNF-4alpha1 Ik-2 Other transcription factors Search SABiosciences Chromatin IP Primers for CUX2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CUX2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q24.12 Ensembl cytogenetic band: 12q24.11 HGNC cytogenetic band: 12q24.12 CUX2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12P111471: view genomic region
(about GC identifiers )
Start:
111,471,828 bp from pter
End:
111,788,358 bp from pter
Size:
316,531 bases
Orientation:
plus strand
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Proteinsfor CUX2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CUX2_HUMAN, O14529 (See
protein sequence )Recommended Name: Homeobox protein cut-like 2 Size : 1486 amino acids; 161677 Da
Subcellular location : Nucleus (By similarity)
Sequence caution : Sequence=BAA22962.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;
3 PDB 3D structures from and Proteopedia for CUX2 :1WH6 (3D)
  1WH8 (3D)
  1X2L (3D)
 
Secondary accessions : A7E2Y4Explore the universe of human proteins at neXtProt for CUX2: NX_O14529 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O14529 CUX2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_056082.2 ENSEMBL proteins: ENSP00000261726 ENSP00000380765 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
NAS --
CUX2 for ontologies About GeneDecksing CUX2 Antibody Products: Assay Products for CUX2:
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Protein
Domains / Familiesfor CUX2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CUX2 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O14529 ProtoNet protein and cluster: O14529
1 Blocks protein family : IPB003350 Homeodomain protein CUT UniProtKB/Swiss-Prot: CUX2_HUMAN, O14529 Similarity : Belongs to the CUT homeobox familySimilarity : Contains 3 CUT DNA-binding domainsSimilarity : Contains 1 homeobox DNA-binding domain
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Functionfor CUX2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: CUX2_HUMAN, O14529 Function : May be a transcription factor involved in neural specification. Binds to DNA in a sequence-specific manner(By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CUX2 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CUX2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CUX2 (NM_015267 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CUX2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CUX2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CUX2
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
-- -- GO:0003700 sequence-specific DNA binding transcription factor activity
NAS -- GO:0043565 sequence-specific DNA binding
IEA --
CUX2 for ontologies About GeneDecksing Animal Models: Mouse knock-out Cux2 tm1.1Nieto for CUX2 5 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Cux2) :
CUX2 for phenotypes About GeneDecksing
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Pathways & Interactionsfor CUX2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CUX2 STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)5/6 Interacting proteins for CUX2 (O14529 3 ENSP00000261726 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 6 )About this table Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006351 transcription, DNA-dependent
IEA -- GO:0006355 regulation of transcription, DNA-dependent
NAS -- GO:0045892 negative regulation of transcription, DNA-dependent
IEA -- GO:0071310 cellular response to organic substance
IEA --
CUX2 for ontologies About GeneDecksing
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Drugs & Compoundsfor CUX2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CUX2 Search CenterWatch for drugs/clinical trials and news about CUX2
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Transcriptsfor CUX2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CUX2 gene: NM_015267.3 Unigene Cluster for CUX2:
Cut-like homeobox 2 Hs.124953 [show with all ESTs ] Unigene Representative Sequence: BC151245 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000261726 (uc001tsa.2 ) ENST00000397643 (uc001tsb.2 ) ENST00000551604 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CUX2 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CUX2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CUX2 (NM_015267 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CUX2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CUX2
Additional cDNA sequence: AB006631.2 AF234996.1 AF271236.1 BC151245.1
3 DOTS entries : DT.313213 DT.121110137
DT.92016077 24/35 AceView cDNA sequences (see all 35 ):
BF446155 AF271236 F02605 F09735 CK300340 AB006631 AA593578 BG060008 BX283453 BE255767 BM691900 AF234996 F12097 BM804306 BU728601 Z43134 AW948980 H05795 T65238 AI126128 AW023436 AW514237 BQ187120 BQ055126 GeneLoc Exon Structure
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Expression for CUX2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CUX2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGAAGGCTGA
About this image CUX2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See CUX2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CUX2 SOURCE GeneReport for Unigene cluster: Hs.124953 SABiosciences Custom PCR Arrays for CUX2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CUX2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CUX2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CUX2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CUX2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CUX2
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Orthologsfor CUX2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for CUX2 gene from 8/22 species (see all 22 ) About this table
ENSEMBL Gene Tree for CUX2 (if available)TreeFam Gene Tree for CUX2 (if available)
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Paralogsfor CUX2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CUX2 gene ONECUT1 2 ONECUT2 2 ONECUT3 2 CUX1 2 2 SIMAP similar genes for CUX2 using alignment to 4 protein entries: CUX2_HUMAN (see all proteins ):Nbla10317 CUX1
CUX2 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for CUX2 PGOHUM00000261080
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Genomic Variantsfor CUX2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 12 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CUX2 (111471828 - 111721828 bp, first 250kb of CUX2)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for CUX2 1 CNV : 71579 1 Indel : 71580 Human Gene Mutation Database (HGMD) : CUX2 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CUX2
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Disorders
/ Diseasesfor CUX2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CUX2 for disorders About GeneDecksing
OMIM gene information: 610648
OMIM disorders : --5 diseases for CUX2 : About MalaCards distal hereditary motor neuropathy fiedler's myocarditis myocarditis bipolar disorder neuropathy 1 disease from the University of Copenhagen DISEASES database for CUX2 :fiedler's myocarditis Human Genome Epidemiology (HuGE) Navigator: CUX2 (5 documents) Export disorders for CUX2 gene to outside databases
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Publicationsfor CUX2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CUX2 gene, integrated from 9 sources (see all 14 ): (articles sorted by number of sources associating them with CUX2) Utopia : connect your pdf to the dynamic world of online information
Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954) 1 , 2 Nakajima D.... Nagase T. (2002) Construction and characterization of human brain cDNA libraries suitable for analysis of cDNA clones encoding relatively large proteins. (PubMed id 9179496) 1 , 2 Ohara O....Nomura N. (1997) CUX2, a potential regulator of NCAM expression: genomic characterization and analysis as a positional candidate susceptibility gene for bipolar disorder. (PubMed id 11353453) 1 , 9 Jacobsen N.J.O.... Owen M.J. (2001) 1000 Genomes-based imputation identifies novel and ref ined associations for the Wellcome Trust Case Control Consortium phase 1 Data. (PubMed id 22293688) 1 Huang J....Li Y. (2012) Maternal genes and facial clefts in offspring: a comp rehensive search for genetic associations in two population-based cleft studies from Scandinavia. (PubMed id 20634891) 1 Jugessur A....Murray J.C. (2010) Case-control association study of 65 candidate genes revealed a possible association of a SNP of HTR5A to be a factor susceptible to bipolar disease in Bulgarian population. (PubMed id 19328558) 1 Yosifova A....Nakamura Y. (2009) High-density SNP association study and copy number variation analysis of the AUTS1 and AUTS5 loci implicate the IMMP2L-DOCK4 gene region in autism susceptibility. (PubMed id 19401682) 1 Maestrini E....Monaco A.P. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) The finished DNA sequence of human chromosome 12. (PubMed id 16541075) 2 Scherer S.E.... Gibbs R.A. (2006) Biochemical characterization of the mammalian Cux2 protein. (PubMed id 15656993) 1 Gingras H....Nepveu A. (2005)
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External Searches for CUX2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CUX2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CUX2 gene
(According to HUGE )
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Specialized Databases showing CUX2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CUX2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CUX2 gene: Search GeneIP for patents involving CUX2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CUX2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CUX2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CUX2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CUX2 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CUX2 OriGene 3'-UTR Clone for CUX2 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CUX2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CUX2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CUX2 OriGene Custom Protein Services for CUX2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CUX2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CUX2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CUX2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CUX2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CUX2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CUX2
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CUX2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CUX2
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CUX2
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Aliases for CUX2
Databases for CUX2
Disorders / Diseases for CUX2
Domains / Families for CUX2
Drugs / Compounds for CUX2
Expression for CUX2
Function for CUX2
Genomic Views for CUX2
Intellectual Property for CUX2
Orthologs for CUX2
Paralogs for CUX2
Pathways / Interactions for CUX2
Products for CUX2
Proteins for CUX2
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Summaries for CUX2
Transcripts for CUX2
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