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Aliases for CTSLP2 Gene

Aliases for CTSLP2 Gene

  • Cathepsin L Pseudogene 2 2 3 5
  • Cathepsin L1 Pseudogene 2 2 3
  • Cathepsin L1 Pseudogene 5 2 3
  • Cathepsin L1 Pseudogene 7 2 3
  • Cathepsin L Pseudogene 5 2 3
  • Cathepsin L Pseudogene 7 2 3
  • Cathepsin L-Like 2 2 3
  • Cathepsin L-Like 5 2
  • Cathepsin L-Like 7 2
  • BA342C24.4 3
  • BA144G6.6 3
  • CTSL1P2 3
  • CTSL1P5 3
  • CTSL1P7 3
  • CTSLL2 3
  • CTSLL5 3
  • CTSLL7 3
  • CTSLP5 3
  • CTSLP7 3

External Ids for CTSLP2 Gene

Previous HGNC Symbols for CTSLP2 Gene

  • CTSLL2
  • CTSL1P2
  • CTSLP5
  • CTSLL5
  • CTSL1P5
  • CTSLP7
  • CTSLL7
  • CTSL1P7

Previous GeneCards Identifiers for CTSLP2 Gene

  • GC10P048156

Summaries for CTSLP2 Gene

GeneCards Summary for CTSLP2 Gene

CTSLP2 (Cathepsin L Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTSLP2 Gene

Genomics for CTSLP2 Gene

Regulatory Elements for CTSLP2 Gene

Enhancers for CTSLP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F047565 0.7 Ensembl 0.3 +17.1 17139 2.4 RFX1 NRF1 CEBPB CEBPG ATF2 ZKSCAN1 ZNF335 FOSL1 SREBF1 POLR2H DUSP8P3 CTSLP2
GH10F047582 0.2 Ensembl 0.8 +0.1 52 0.9 CTSLP2 DUSP8P3
GH10F047590 0.4 Ensembl 0.4 -7.1 -7082 0.2 ZNF316 MAFG CTSLP2 LOC102724643
GH10F047591 0.4 Ensembl 0.4 -7.7 -7682 0.6 MAFG MAFK CTSLP2 LOC102724643
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTSLP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTSLP2 Gene

Chromosome:
10
Start:
47,580,671 bp from pter
End:
47,583,419 bp from pter
Size:
2,749 bases
Orientation:
Minus strand

Genomic View for CTSLP2 Gene

Genes around CTSLP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTSLP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTSLP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTSLP2 Gene

Proteins for CTSLP2 Gene

Post-translational modifications for CTSLP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTSLP2 Gene

Domains & Families for CTSLP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTSLP2 Gene

Function for CTSLP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTSLP2 Gene

Localization for CTSLP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTSLP2 Gene

Pathways & Interactions for CTSLP2 Gene

SuperPathways for CTSLP2 Gene

No Data Available

Interacting Proteins for CTSLP2 Gene

Gene Ontology (GO) - Biological Process for CTSLP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTSLP2 Gene

Transcripts for CTSLP2 Gene

mRNA/cDNA for CTSLP2 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTSLP2 Gene

No ASD Table

Relevant External Links for CTSLP2 Gene

GeneLoc Exon Structure for
CTSLP2
ECgene alternative splicing isoforms for
CTSLP2

Expression for CTSLP2 Gene

mRNA differential expression in normal tissues according to GTEx for CTSLP2 Gene

This gene is overexpressed in Liver (x8.4), Pancreas (x7.6), Kidney - Cortex (x6.1), and Thyroid (x6.0).

NURSA nuclear receptor signaling pathways regulating expression of CTSLP2 Gene:

CTSLP2

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CTSLP2 Gene

Orthologs for CTSLP2 Gene

Evolution for CTSLP2 Gene

ENSEMBL:
Gene Tree for CTSLP2 (if available)
TreeFam:
Gene Tree for CTSLP2 (if available)

No data available for Orthologs for CTSLP2 Gene

Paralogs for CTSLP2 Gene

No data available for Paralogs for CTSLP2 Gene

Variants for CTSLP2 Gene

Sequence variations from dbSNP and Humsavar for CTSLP2 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs112242505 -- 47,581,603(-) GAAGA(A/G)CATCA intron-variant
rs112397367 -- 47,584,813(-) ACCAC(G/T)CCCGG intron-variant, upstream-variant-2KB
rs113128140 -- 47,581,901(-) TTGGC(A/G)GGGCA intron-variant
rs113938017 -- 47,581,478(-) GGCCA(A/T)GAACA intron-variant, nc-transcript-variant
rs182028404 -- 47,584,058(-) GGACC(A/C)CAGGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CTSLP2 Gene

Variant ID Type Subtype PubMed ID
nsv951577 CNV deletion 24416366
nsv947968 CNV duplication 23825009
nsv821424 CNV duplication 20802225
nsv550805 CNV loss 21841781
nsv1068309 CNV deletion 25765185
dgv443n106 CNV deletion 24896259
dgv137e199 CNV deletion 23128226

Relevant External Links for CTSLP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTSLP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTSLP2 Gene

Disorders for CTSLP2 Gene

Relevant External Links for CTSLP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTSLP2

No disorders were found for CTSLP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTSLP2 Gene

Publications for CTSLP2 Gene

  1. A novel family of cathepsin L-like (CTSLL) sequences on human chromosome 10q and related transcripts. (PMID: 7713509) Bryce S.D. … Lunec J. (Genomics 1994) 2 3 64

Products for CTSLP2 Gene

Sources for CTSLP2 Gene

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