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Aliases for CTSL3P Gene

Aliases for CTSL3P Gene

  • Cathepsin L Family Member 3, Pseudogene 2 3 5
  • HCTSL-S 3 4
  • CTSL3 3 4
  • Cathepsin L Family Member 3 2
  • Cathepsin L-Like Protein 3
  • Cathepsin L3 Pseudogene 4
  • EC 3.4.22 58

External Ids for CTSL3P Gene

Previous HGNC Symbols for CTSL3P Gene

  • CTSL3

Previous GeneCards Identifiers for CTSL3P Gene

  • GC09P090390

Summaries for CTSL3P Gene

GeneCards Summary for CTSL3P Gene

CTSL3P (Cathepsin L Family Member 3, Pseudogene) is a Pseudogene. GO annotations related to this gene include cysteine-type peptidase activity.

Additional gene information for CTSL3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTSL3P Gene

Genomics for CTSL3P Gene

Regulatory Elements for CTSL3P Gene

Enhancers for CTSL3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H087791 1.7 FANTOM5 Ensembl ENCODE 0.3 +20.6 20594 2 PKNOX1 FOXA2 SIN3A YY1 ZNF766 ATF7 FOS DEK SP5 GTF2B CTSL ENSG00000214888 DAPK1 CTSL3P ELF2P3
GH09H087810 1.3 FANTOM5 dbSUPER 0.3 +38.4 38426 0 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ATF7 NCOA1 REST CTSL ELF2P3 CTSL3P
GH09H087795 1.2 FANTOM5 Ensembl ENCODE 0.3 +23.9 23882 1 PKNOX1 ZNF197 ARNT BHLHE40 GABPA ZNF589 NR2C1 MGA NR2C2 CTSL ENSG00000214888 DAPK1 ELF2P3 CTSL3P
GH09H087771 0.5 FANTOM5 ENCODE 0.7 -1.1 -1077 0 CTSL3P LOC105376128
GH09H087812 1.1 FANTOM5 Ensembl 0.3 +40.4 40421 0 CTCF ARNT MAX RAD21 RFX5 CC2D1A EGR1 SMC3 ZNF143 ZNF654 CTSL DAPK1 ELF2P3 CTSL3P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTSL3P on UCSC Golden Path with GeneCards custom track

Genomic Location for CTSL3P Gene

Chromosome:
9
Start:
87,772,453 bp from pter
End:
87,786,884 bp from pter
Size:
14,432 bases
Orientation:
Plus strand

Genomic View for CTSL3P Gene

Genes around CTSL3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTSL3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTSL3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTSL3P Gene

Proteins for CTSL3P Gene

  • Protein details for CTSL3P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5NE16-CATL3_HUMAN
    Recommended name:
    Putative inactive cathepsin L-like protein CTSL3P
    Protein Accession:
    Q5NE16

    Protein attributes for CTSL3P Gene

    Size:
    218 amino acids
    Molecular mass:
    25059 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CTSL3P Gene

Selected DME Specific Peptides for CTSL3P Gene

Q5NE16:
  • VDWREKG
  • VTPVKDQ

Post-translational modifications for CTSL3P Gene

No Post-translational modifications

Domains & Families for CTSL3P Gene

Protein Domains for CTSL3P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CTSL3P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5NE16

UniProtKB/Swiss-Prot:

CATL3_HUMAN :
  • Belongs to the peptidase C1 family.
Family:
  • Belongs to the peptidase C1 family.
genes like me logo Genes that share domains with CTSL3P: view

No data available for Gene Families for CTSL3P Gene

Function for CTSL3P Gene

Enzyme Numbers (IUBMB) for CTSL3P Gene

Phenotypes From GWAS Catalog for CTSL3P Gene

Gene Ontology (GO) - Molecular Function for CTSL3P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008234 cysteine-type peptidase activity IEA --
genes like me logo Genes that share ontologies with CTSL3P: view

Phenotypes for CTSL3P Gene

genes like me logo Genes that share phenotypes with CTSL3P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CTSL3P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTSL3P Gene

Localization for CTSL3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTSL3P Gene

Pathways & Interactions for CTSL3P Gene

SuperPathways for CTSL3P Gene

No Data Available

Interacting Proteins for CTSL3P Gene

Selected Interacting proteins: Q5NE16-CATL3_HUMAN for CTSL3P Gene via IID

Gene Ontology (GO) - Biological Process for CTSL3P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
genes like me logo Genes that share ontologies with CTSL3P: view

No data available for Pathways by source and SIGNOR curated interactions for CTSL3P Gene

Drugs & Compounds for CTSL3P Gene

No Compound Related Data Available

Transcripts for CTSL3P Gene

mRNA/cDNA for CTSL3P Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(688) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTSL3P Gene

Cathepsin L family member 3, pseudogene:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CTSL3P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CTSL3P Gene

No ASD Table

Relevant External Links for CTSL3P Gene

GeneLoc Exon Structure for
CTSL3P
ECgene alternative splicing isoforms for
CTSL3P

Expression for CTSL3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTSL3P Gene

mRNA differential expression in normal tissues according to GTEx for CTSL3P Gene

This gene is overexpressed in Kidney - Cortex (x43.2) and Heart - Atrial Appendage (x6.6).

NURSA nuclear receptor signaling pathways regulating expression of CTSL3P Gene:

CTSL3P

SOURCE GeneReport for Unigene cluster for CTSL3P Gene:

Hs.690450
genes like me logo Genes that share expression patterns with CTSL3P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTSL3P Gene

Orthologs for CTSL3P Gene

Evolution for CTSL3P Gene

ENSEMBL:
Gene Tree for CTSL3P (if available)
TreeFam:
Gene Tree for CTSL3P (if available)

No data available for Orthologs for CTSL3P Gene

Paralogs for CTSL3P Gene

(2) SIMAP similar genes for CTSL3P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CTSL3P: view

No data available for Paralogs for CTSL3P Gene

Variants for CTSL3P Gene

Sequence variations from dbSNP and Humsavar for CTSL3P Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000115572 -- 87,776,897(+) CTAAA(C/T)CTGAC intron-variant
rs1000537374 -- 87,773,245(+) GATCA(A/G)GTAAG nc-transcript-variant
rs1000554652 -- 87,772,958(+) AGGGA(A/G)ACACA nc-transcript-variant
rs1000726588 -- 87,781,583(+) ATCTT(A/T)TGTGT intron-variant
rs1000794113 -- 87,780,283(+) TATTC(-/T)TATTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CTSL3P Gene

Variant ID Type Subtype PubMed ID
esv2759703 CNV loss 17122850
nsv8548 CNV gain 18304495
nsv972413 CNV duplication 23825009

Relevant External Links for CTSL3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTSL3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTSL3P Gene

Disorders for CTSL3P Gene

Relevant External Links for CTSL3P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTSL3P

No disorders were found for CTSL3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTSL3P Gene

Publications for CTSL3P Gene

  1. CA/C1 peptidases of the malaria parasites Plasmodium falciparum and P. berghei and their mammalian hosts--a bioinformatical analysis. (PMID: 19663681) Xiao K … Dandekar T (Biological chemistry 2009) 2 3 60
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  5. Characterization of a cDNA encoding a cathepsin L-like protein of Rhodnius prolixus. (PMID: 11881815) Lopez-Ordoñez T … Hernández-Hernández FD (Insect molecular biology 2001) 22 60

Products for CTSL3P Gene

Sources for CTSL3P Gene

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