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Aliases for CTSL3P Gene

Aliases for CTSL3P Gene

  • Cathepsin L Family Member 3, Pseudogene 2 3
  • HCTSL-S 3 4
  • CTSL3 3 4
  • Cathepsin L Family Member 3 2
  • Cathepsin L-Like Protein 3
  • Cathepsin L3 Pseudogene 4
  • EC 3.4.22 64

External Ids for CTSL3P Gene

Previous Symbols for CTSL3P Gene

  • CTSL3

Summaries for CTSL3P Gene

GeneCards Summary for CTSL3P Gene

CTSL3P (Cathepsin L Family Member 3, Pseudogene) is a Pseudogene. GO annotations related to this gene include cysteine-type peptidase activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTSL3P Gene

Genomics for CTSL3P Gene

Genomic Location for CTSL3P Gene

Start:
87,772,453 bp from pter
End:
87,786,884 bp from pter
Size:
14,432 bases
Orientation:
Plus strand

Genomic View for CTSL3P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CTSL3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTSL3P Gene

No data available for Regulatory Elements for CTSL3P Gene

Proteins for CTSL3P Gene

  • Protein details for CTSL3P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5NE16-CATL3_HUMAN
    Recommended name:
    Putative inactive cathepsin L-like protein CTSL3P
    Protein Accession:
    Q5NE16
    Secondary Accessions:

    Protein attributes for CTSL3P Gene

    Size:
    218 amino acids
    Molecular mass:
    25059 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CTSL3P Gene

Proteomics data for CTSL3P Gene at MOPED

Selected DME Specific Peptides for CTSL3P Gene

Post-translational modifications for CTSL3P Gene

No Post-translational modifications

Domains for CTSL3P Gene

Gene Families for CTSL3P Gene

HGNC:
  • CTS :Cathepsins

Protein Domains for CTSL3P Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CATL3_HUMAN
Family:
  • Belongs to the peptidase C1 family.:
    • Q5NE16
genes like me logo Genes that share domains with CTSL3P: view

Function for CTSL3P Gene

Enzyme Numbers (IUBMB) for CTSL3P Gene

Gene Ontology (GO) - Molecular Function for CTSL3P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008234 cysteine-type peptidase activity IEA --
genes like me logo Genes that share ontologies with CTSL3P: view

No data available for Molecular function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CTSL3P Gene

Localization for CTSL3P Gene

No data available for Gene Ontology (GO) - Cellular Components for CTSL3P Gene

Pathways for CTSL3P Gene

SuperPathways for CTSL3P Gene

No Data Available

Interacting Proteins for CTSL3P Gene

Gene Ontology (GO) - Biological Process for CTSL3P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
genes like me logo Genes that share ontologies with CTSL3P: view

No data available for Pathways by source for CTSL3P Gene

Transcripts for CTSL3P Gene

mRNA/cDNA for CTSL3P Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(688) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTSL3P Gene

Cathepsin L family member 3, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CTSL3P Gene

No ASD Table

Relevant External Links for CTSL3P Gene

GeneLoc Exon Structure for
CTSL3P
ECgene alternative splicing isoforms for
CTSL3P

Expression for CTSL3P Gene

mRNA expression in normal human tissues for CTSL3P Gene

mRNA differential expression in normal tissues according to GTEx for CTSL3P Gene

This gene is overexpressed in Kidney - Cortex (43.2) and Heart - Atrial Appendage (6.6).

SOURCE GeneReport for Unigene cluster for CTSL3P Gene Hs.690450

genes like me logo Genes that share expressions with CTSL3P: view

Orthologs for CTSL3P Gene

Evolution for CTSL3P Gene

ENSEMBL:
Gene Tree for CTSL3P (if available)
TreeFam:
Gene Tree for CTSL3P (if available)

No data available for Orthologs for CTSL3P Gene

Paralogs for CTSL3P Gene

Selected SIMAP similar genes for CTSL3P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CTSL3P: view

No data available for Paralogs for CTSL3P Gene

Variants for CTSL3P Gene

Sequence variations from dbSNP and Humsavar for CTSL3P Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs718295 -- 87,783,958(-) TGCAT(G/T)CCAGC intron-variant
rs1328577 -- 87,781,896(-) CCAAA(A/G)AAGTA intron-variant
rs1887790 -- 87,777,537(+) TTTCA(C/T)GTGGA intron-variant
rs1887791 -- 87,777,768(+) AGAAT(C/T)GGTGT intron-variant
rs1927964 -- 87,782,415(+) TTGAC(A/G)TTGAG intron-variant

Relevant External Links for CTSL3P Gene

HapMap Linkage Disequilibrium report
CTSL3P

No data available for Structural Variations from Database of Genomic Variants (DGV) for CTSL3P Gene

Disorders for CTSL3P Gene

No disorders were found for CTSL3P Gene.

No data available for UniProtKB/Swiss-Prot for CTSL3P Gene

Publications for CTSL3P Gene

  1. CA/C1 peptidases of the malaria parasites Plasmodium falciparum and P. berghei and their mammalian hosts--a bioinformatical analysis. (PMID: 19663681) Xiao K. … Dandekar T. (Biol. Chem. 2009) 2 3
  2. Characterization of a cDNA encoding a cathepsin L-like protein of Rhodnius prolixus. (PMID: 11881815) Lopez-OrdoA+ez T. … HernA!ndez-HernA!ndez F.D. (Insect Mol. Biol. 2001) 23
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CTSL3P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CTSL3P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CTSL3P
    • Block miRNA regulation of CTSL3P using miScript Target Protectors

    Sources for CTSL3P Gene

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