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Aliases for CTD-3080P12.3 Gene

Subcategory (RNA class) for CTD-3080P12.3 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-3080P12.3 Gene

  • Uncharacterized LOC101928857 3 5

External Ids for CTD-3080P12.3 Gene

Summaries for CTD-3080P12.3 Gene

GeneCards Summary for CTD-3080P12.3 Gene

CTD-3080P12.3 (Uncharacterized LOC101928857) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-3080P12.3 Gene

Genomics for CTD-3080P12.3 Gene

Regulatory Elements for CTD-3080P12.3 Gene

Enhancers for CTD-3080P12.3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G001180 2 FANTOM5 Ensembl ENCODE dbSUPER 37 -5.3 -5328 6.5 HDGF PKNOX1 MLX ARNT SIN3A ARID4B YBX1 YY1 ZNF766 KLF13 CTD-3080P12.3 SLC6A19 SLC6A18 SLC6A3 BRD9 TRIP13
GH05G001137 1.5 Ensembl ENCODE dbSUPER 16.9 +39.3 39326 3.5 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A ZNF2 ZNF48 GLIS2 ZNF143 CTD-3080P12.3 ENSG00000250173 SLC12A7 GC05P001123
GH05G001151 1.4 FANTOM5 ENCODE dbSUPER 17.4 +25.5 25493 2.6 PKNOX1 NFIB ZSCAN4 BMI1 THRB ZBTB7B GLIS2 ZNF207 RELB RCOR1 CTD-3080P12.3 SLC6A19 ENSG00000250173 SLC6A18 TERT BRD9 TRIP13 SLC6A3 ZDHHC11 SLC12A7
GH05G001199 1.7 FANTOM5 ENCODE dbSUPER 11.6 -23.9 -23891 6.5 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B YBX1 ZBTB7B ZNF766 ZNF143 SLC6A18 CTD-3080P12.3 ENSG00000271119 CCDC127 ENSG00000250173 ZDHHC11B BRD9P2 SLC6A19 GC05M001204
GH05G000962 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +214.6 214609 2.5 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 JUNB SMARCA4 NBN CTD-3080P12.3 NKD2 LOC100506688 GC05M000954 PIR47702
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTD-3080P12.3 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTD-3080P12.3 Gene

Chromosome:
5
Start:
1,173,096 bp from pter
End:
1,178,605 bp from pter
Size:
5,510 bases
Orientation:
Minus strand

Genomic View for CTD-3080P12.3 Gene

Genes around CTD-3080P12.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-3080P12.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-3080P12.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-3080P12.3 Gene

Proteins for CTD-3080P12.3 Gene

Post-translational modifications for CTD-3080P12.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-3080P12.3 Gene

Domains & Families for CTD-3080P12.3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-3080P12.3 Gene

Function for CTD-3080P12.3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-3080P12.3 Gene

Localization for CTD-3080P12.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTD-3080P12.3 Gene

Pathways & Interactions for CTD-3080P12.3 Gene

SuperPathways for CTD-3080P12.3 Gene

No Data Available

Interacting Proteins for CTD-3080P12.3 Gene

Gene Ontology (GO) - Biological Process for CTD-3080P12.3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-3080P12.3 Gene

Drugs & Compounds for CTD-3080P12.3 Gene

No Compound Related Data Available

Transcripts for CTD-3080P12.3 Gene

mRNA/cDNA for CTD-3080P12.3 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-3080P12.3 Gene

No ASD Table

Relevant External Links for CTD-3080P12.3 Gene

GeneLoc Exon Structure for
CTD-3080P12.3

Expression for CTD-3080P12.3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-3080P12.3 Gene

mRNA differential expression in normal tissues according to GTEx for CTD-3080P12.3 Gene

This gene is overexpressed in Liver (x23.5), Kidney - Cortex (x10.1), and Testis (x4.3).
genes like me logo Genes that share expression patterns with CTD-3080P12.3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-3080P12.3 Gene

Orthologs for CTD-3080P12.3 Gene

Evolution for CTD-3080P12.3 Gene

ENSEMBL:
Gene Tree for CTD-3080P12.3 (if available)
TreeFam:
Gene Tree for CTD-3080P12.3 (if available)

No data available for Orthologs for CTD-3080P12.3 Gene

Paralogs for CTD-3080P12.3 Gene

No data available for Paralogs for CTD-3080P12.3 Gene

Variants for CTD-3080P12.3 Gene

Sequence variations from dbSNP and Humsavar for CTD-3080P12.3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000528191 -- 1,175,395(+) GTCTG(A/G)GTTTT nc-transcript-variant
rs1000912727 -- 1,175,146(+) TCCAT(C/T)GCTTC nc-transcript-variant
rs1001466703 -- 1,176,596(+) GGGTC(A/G)GGGGC intron-variant
rs1001799443 -- 1,176,485(+) CTCAT(A/G)GCCAG nc-transcript-variant
rs1001978022 -- 1,172,698(+) CTGGG(C/T)ATGGC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CTD-3080P12.3 Gene

Variant ID Type Subtype PubMed ID
dgv1003e199 CNV deletion 23128226
dgv687n27 CNV gain 19166990
dgv927n67 CNV loss 20364138
dgv928n67 CNV loss 20364138
dgv9522n54 CNV loss 21841781
dgv9527n54 CNV loss 21841781
dgv9528n54 CNV loss 21841781
dgv9529n54 CNV loss 21841781
dgv9530n54 CNV loss 21841781
dgv9531n54 CNV gain+loss 21841781
dgv9532n54 CNV gain 21841781
esv2729430 CNV deletion 23290073
esv29858 CNV loss 19812545
esv3295384 CNV deletion 24192839
esv3565341 CNV deletion 23714750
esv3575810 CNV gain 25503493
esv3603795 CNV gain 21293372
esv3603797 CNV gain 21293372
esv3603799 CNV loss 21293372
esv3894109 CNV gain 25118596
esv3894111 CNV loss 25118596
esv999051 CNV deletion 20482838
nsv1032360 CNV loss 25217958
nsv1033961 CNV gain 25217958
nsv10656 CNV loss 18304495
nsv1072484 CNV deletion 25765185
nsv1133013 OTHER inversion 24896259
nsv1147234 OTHER inversion 26484159
nsv1152310 CNV deletion 26484159
nsv428459 CNV gain+loss 18775914
nsv461900 CNV loss 19166990
nsv4678 CNV deletion 18451855
nsv469577 CNV loss 16826518
nsv470984 CNV loss 18288195
nsv470986 CNV gain 18288195
nsv509044 CNV insertion 20534489
nsv510895 OTHER complex 20534489
nsv511283 CNV loss 21212237
nsv513211 CNV loss 21212237
nsv527182 CNV loss 19592680
nsv596629 CNV gain 21841781
nsv596824 CNV loss 21841781
nsv596829 CNV gain+loss 21841781
nsv596830 CNV loss 21841781
nsv596831 CNV gain 21841781
nsv596835 CNV gain+loss 21841781
nsv596840 CNV gain+loss 21841781
nsv596841 CNV loss 21841781
nsv950627 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for CTD-3080P12.3 Gene

Disorders for CTD-3080P12.3 Gene

Relevant External Links for CTD-3080P12.3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTD-3080P12.3

No disorders were found for CTD-3080P12.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTD-3080P12.3 Gene

Publications for CTD-3080P12.3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CTD-3080P12.3 Gene

Sources for CTD-3080P12.3 Gene

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