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Aliases for CTD-2350J17.1 Gene

Subcategory (RNA class) for CTD-2350J17.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-2350J17.1 Gene

  • Uncharacterized LOC101929472 3 5

External Ids for CTD-2350J17.1 Gene

Summaries for CTD-2350J17.1 Gene

GeneCards Summary for CTD-2350J17.1 Gene

CTD-2350J17.1 (Uncharacterized LOC101929472) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTD-2350J17.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2350J17.1 Gene

Genomics for CTD-2350J17.1 Gene

Regulatory Elements for CTD-2350J17.1 Gene

Enhancers for CTD-2350J17.1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H015620 0.8 Ensembl ENCODE 10.7 -6.1 -6087 2 JUND POLR2A JUN USF2 MAX FOS CTD-2350J17.1 GC05P015675
GH05H015634 0.2 ENCODE 13.4 -20.3 -20341 1 CTD-2350J17.1 GC05P015675
GH05H015646 0.2 ENCODE 7.2 -31.6 -31565 0 CTD-2350J17.1 GC05P015675
GH05H015645 0.4 Ensembl 0.3 -30.6 -30599 0 JUN MAX GC05P015675 CTD-2350J17.1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTD-2350J17.1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTD-2350J17.1 Gene

Chromosome:
5
Start:
15,602,189 bp from pter
End:
15,615,002 bp from pter
Size:
12,814 bases
Orientation:
Minus strand

Genomic View for CTD-2350J17.1 Gene

Genes around CTD-2350J17.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2350J17.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2350J17.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2350J17.1 Gene

Proteins for CTD-2350J17.1 Gene

Post-translational modifications for CTD-2350J17.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2350J17.1 Gene

Domains & Families for CTD-2350J17.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2350J17.1 Gene

Function for CTD-2350J17.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2350J17.1 Gene

Localization for CTD-2350J17.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTD-2350J17.1 Gene

Pathways & Interactions for CTD-2350J17.1 Gene

SuperPathways for CTD-2350J17.1 Gene

No Data Available

Interacting Proteins for CTD-2350J17.1 Gene

Gene Ontology (GO) - Biological Process for CTD-2350J17.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2350J17.1 Gene

Drugs & Compounds for CTD-2350J17.1 Gene

No Compound Related Data Available

Transcripts for CTD-2350J17.1 Gene

mRNA/cDNA for CTD-2350J17.1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2350J17.1 Gene

No ASD Table

Relevant External Links for CTD-2350J17.1 Gene

GeneLoc Exon Structure for
CTD-2350J17.1

Expression for CTD-2350J17.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2350J17.1 Gene

mRNA differential expression in normal tissues according to GTEx for CTD-2350J17.1 Gene

This gene is overexpressed in Testis (x45.6).
genes like me logo Genes that share expression patterns with CTD-2350J17.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2350J17.1 Gene

Orthologs for CTD-2350J17.1 Gene

Evolution for CTD-2350J17.1 Gene

ENSEMBL:
Gene Tree for CTD-2350J17.1 (if available)
TreeFam:
Gene Tree for CTD-2350J17.1 (if available)

No data available for Orthologs for CTD-2350J17.1 Gene

Paralogs for CTD-2350J17.1 Gene

No data available for Paralogs for CTD-2350J17.1 Gene

Variants for CTD-2350J17.1 Gene

Sequence variations from dbSNP and Humsavar for CTD-2350J17.1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000397444 -- 15,608,996(+) TTGCA(C/T)GTGAG intron-variant
rs1000845028 -- 15,604,126(+) CATAC(A/C)ACTGC intron-variant
rs1000870618 -- 15,605,955(+) GTGCT(C/T)AATCA intron-variant
rs1001156523 -- 15,616,869(+) ATCGA(C/T)GCCAT intron-variant, upstream-variant-2KB
rs1001510407 -- 15,606,898(+) GGCTT(A/G)AAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CTD-2350J17.1 Gene

Variant ID Type Subtype PubMed ID
esv2671030 CNV deletion 23128226
esv3604112 CNV loss 21293372
nsv4732 CNV deletion 18451855
nsv4733 CNV insertion 18451855
nsv516929 CNV gain+loss 19592680
nsv830214 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for CTD-2350J17.1 Gene

Disorders for CTD-2350J17.1 Gene

Relevant External Links for CTD-2350J17.1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTD-2350J17.1

No disorders were found for CTD-2350J17.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTD-2350J17.1 Gene

Publications for CTD-2350J17.1 Gene

No publications were found for CTD-2350J17.1 Gene.

Products for CTD-2350J17.1 Gene

Sources for CTD-2350J17.1 Gene

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