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Aliases for CTD-2297D10.2 Gene

Subcategory (RNA class) for CTD-2297D10.2 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-2297D10.2 Gene

  • Uncharacterized LOC101929176 3

External Ids for CTD-2297D10.2 Gene

Summaries for CTD-2297D10.2 Gene

GeneCards Summary for CTD-2297D10.2 Gene

CTD-2297D10.2 (Uncharacterized LOC101929176) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2297D10.2 Gene

Genomics for CTD-2297D10.2 Gene

Regulatory Elements for CTD-2297D10.2 Gene

Enhancers for CTD-2297D10.2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G005418 1.8 FANTOM5 Ensembl ENCODE 11.3 -281.3 -281300 5.6 CREB3L1 DMAP1 FEZF1 YY1 ZNF143 SP3 NFYC TBX21 MEF2D ZNF610 LINC02145 ICE1 ADAMTS16 CTD-2297D10.2 LOC101929200
GH05G005181 0.8 Ensembl ENCODE 10.4 -43.2 -43155 2.6 POLR2A MAX POU5F1 KDM1A RBBP5 ETS1 ADAMTS16 CTD-2297D10.2 ENSG00000250866 ALG3P1
GH05G005178 0.6 ENCODE 10.2 -39.5 -39508 1.7 TEAD4 CHD7 ETS1 HDAC2 POLR2A BCL11A GLIS1 POU5F1 KDM1A ADAMTS16 CTD-2297D10.2 ENSG00000250866 ALG3P1
GH05G005381 0.4 ENCODE 10.6 -241.5 -241496 1.0 MAFG MAFK ADAMTS16 CTD-2297D10.2 ALG3P1 MTCO1P30
GH05G005163 0.2 ENCODE 11.8 -24.2 -24215 0.9 CTD-2297D10.2 ADAMTS16 ENSG00000250866
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTD-2297D10.2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTD-2297D10.2 Gene

Chromosome:
5
Start:
5,132,085 bp from pter
End:
5,140,054 bp from pter
Size:
7,970 bases
Orientation:
Minus strand

Genomic View for CTD-2297D10.2 Gene

Genes around CTD-2297D10.2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2297D10.2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2297D10.2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2297D10.2 Gene

Proteins for CTD-2297D10.2 Gene

Post-translational modifications for CTD-2297D10.2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2297D10.2 Gene

Domains & Families for CTD-2297D10.2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2297D10.2 Gene

Function for CTD-2297D10.2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2297D10.2 Gene

Localization for CTD-2297D10.2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CTD-2297D10.2 Gene

Pathways & Interactions for CTD-2297D10.2 Gene

SuperPathways for CTD-2297D10.2 Gene

No Data Available

Interacting Proteins for CTD-2297D10.2 Gene

Gene Ontology (GO) - Biological Process for CTD-2297D10.2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2297D10.2 Gene

Drugs & Compounds for CTD-2297D10.2 Gene

No Compound Related Data Available

Transcripts for CTD-2297D10.2 Gene

mRNA/cDNA for CTD-2297D10.2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2297D10.2 Gene

No ASD Table

Relevant External Links for CTD-2297D10.2 Gene

GeneLoc Exon Structure for
CTD-2297D10.2

Expression for CTD-2297D10.2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2297D10.2 Gene

mRNA differential expression in normal tissues according to GTEx for CTD-2297D10.2 Gene

This gene is overexpressed in Brain - Cerebellum (x19.6), Brain - Cerebellar Hemisphere (x17.7), and Ovary (x7.2).
genes like me logo Genes that share expression patterns with CTD-2297D10.2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2297D10.2 Gene

Orthologs for CTD-2297D10.2 Gene

Evolution for CTD-2297D10.2 Gene

ENSEMBL:
Gene Tree for CTD-2297D10.2 (if available)
TreeFam:
Gene Tree for CTD-2297D10.2 (if available)

No data available for Orthologs for CTD-2297D10.2 Gene

Paralogs for CTD-2297D10.2 Gene

No data available for Paralogs for CTD-2297D10.2 Gene

Variants for CTD-2297D10.2 Gene

Sequence variations from dbSNP and Humsavar for CTD-2297D10.2 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000437742 -- 5,134,385(+) AGAAG(C/T)CAGTG intron-variant
rs1001028072 -- 5,139,609(+) TGGCC(A/G)TGACC intron-variant, upstream-variant-2KB
rs1001304913 -- 5,138,130(+) TCCAC(A/G)GCGCC intron-variant
rs1001345528 -- 5,139,786(+) GTGTC(C/G/T)CCACA intron-variant, upstream-variant-2KB
rs1001378189 -- 5,134,990(+) CTTCC(A/C)GAGCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CTD-2297D10.2 Gene

Variant ID Type Subtype PubMed ID
esv1623581 CNV insertion 17803354
esv25455 CNV loss 19812545
esv2759318 CNV loss 17122850
esv3365248 CNV insertion 20981092
esv3603885 CNV gain 21293372
esv3603889 CNV gain 21293372
nsv1015679 CNV loss 25217958
nsv1024784 CNV gain 25217958
nsv329641 CNV insertion 16902084
nsv4691 CNV insertion 18451855
nsv596937 CNV gain 21841781
nsv596938 CNV loss 21841781
nsv596939 CNV loss 21841781
nsv830194 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for CTD-2297D10.2 Gene

Disorders for CTD-2297D10.2 Gene

Relevant External Links for CTD-2297D10.2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTD-2297D10.2

No disorders were found for CTD-2297D10.2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTD-2297D10.2 Gene

Publications for CTD-2297D10.2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for CTD-2297D10.2 Gene

Sources for CTD-2297D10.2 Gene

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