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Aliases for CTD-2270F17.1 Gene

Subcategory (RNA class) for CTD-2270F17.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-2270F17.1 Gene

  • Uncharacterized LOC101928033 3 5

External Ids for CTD-2270F17.1 Gene

Previous GeneCards Identifiers for CTD-2270F17.1 Gene

  • GC05P169817

Summaries for CTD-2270F17.1 Gene

GeneCards Summary for CTD-2270F17.1 Gene

CTD-2270F17.1 (Uncharacterized LOC101928033) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTD-2270F17.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2270F17.1 Gene

Genomics for CTD-2270F17.1 Gene

Regulatory Elements for CTD-2270F17.1 Gene

Enhancers for CTD-2270F17.1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H170329 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -55.7 -55717 8 HDGF PKNOX1 ATF1 ARNT SIN3A YBX1 FEZF1 ETS1 ELK1 FOS LCP2 KCNMB1 LINC01366 GABRP CTD-2270F17.1 C5orf58 KCNIP1
GH05H170273 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -107.5 -107475 17 HDGF PKNOX1 TCF12 ZNF143 ZNF207 ATF7 RUNX3 REST MBD2 SMARCA4 SLIT3 KCNMB1 CTD-2270F17.1 LCP2 C5orf58 GC05M170247
GH05H170311 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -76.0 -75997 4 HDAC1 CTCF PKNOX1 ATF1 ZMYM3 MAX EBF1 EED NFYB NFE2 LCP2 KCNMB1 KCNIP1 CTD-2270F17.1 LOC100128059 LINC01366
GH05H170305 1.5 Ensembl ENCODE dbSUPER 11.4 -82.3 -82327 3 PKNOX1 ATF1 SIN3A TCF12 ZNF766 GATA2 FOS ATF7 NCOA1 JUNB KCNIP1 KCNMB1 CTD-2270F17.1 LCP2 LOC100128059
GH05H170357 1.2 FANTOM5 Ensembl ENCODE 12.7 -31.1 -31093 1 HDAC1 L3MBTL2 NRF1 REST CTBP1 EGR1 IKZF1 CREM EGR2 SPI1 LCP2 KCNMB1 CTD-2270F17.1 KCNIP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTD-2270F17.1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTD-2270F17.1 Gene

Chromosome:
5
Start:
170,389,493 bp from pter
End:
170,422,844 bp from pter
Size:
33,352 bases
Orientation:
Plus strand

Genomic View for CTD-2270F17.1 Gene

Genes around CTD-2270F17.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2270F17.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2270F17.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2270F17.1 Gene

Proteins for CTD-2270F17.1 Gene

Post-translational modifications for CTD-2270F17.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2270F17.1 Gene

Domains & Families for CTD-2270F17.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2270F17.1 Gene

Function for CTD-2270F17.1 Gene

Phenotypes From GWAS Catalog for CTD-2270F17.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2270F17.1 Gene

Localization for CTD-2270F17.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTD-2270F17.1 Gene

Pathways & Interactions for CTD-2270F17.1 Gene

SuperPathways for CTD-2270F17.1 Gene

No Data Available

Interacting Proteins for CTD-2270F17.1 Gene

Gene Ontology (GO) - Biological Process for CTD-2270F17.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2270F17.1 Gene

Drugs & Compounds for CTD-2270F17.1 Gene

No Compound Related Data Available

Transcripts for CTD-2270F17.1 Gene

mRNA/cDNA for CTD-2270F17.1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2270F17.1 Gene

No ASD Table

Relevant External Links for CTD-2270F17.1 Gene

GeneLoc Exon Structure for
CTD-2270F17.1

Expression for CTD-2270F17.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2270F17.1 Gene

mRNA differential expression in normal tissues according to GTEx for CTD-2270F17.1 Gene

This gene is overexpressed in Uterus (x5.5), Colon - Sigmoid (x4.7), Esophagus - Muscularis (x4.7), Artery - Tibial (x4.5), and Esophagus - Gastroesophageal Junction (x4.4).
genes like me logo Genes that share expression patterns with CTD-2270F17.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2270F17.1 Gene

Orthologs for CTD-2270F17.1 Gene

Evolution for CTD-2270F17.1 Gene

ENSEMBL:
Gene Tree for CTD-2270F17.1 (if available)
TreeFam:
Gene Tree for CTD-2270F17.1 (if available)

No data available for Orthologs for CTD-2270F17.1 Gene

Paralogs for CTD-2270F17.1 Gene

No data available for Paralogs for CTD-2270F17.1 Gene

Variants for CTD-2270F17.1 Gene

Sequence variations from dbSNP and Humsavar for CTD-2270F17.1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000146719 -- 170,420,754(+) AATAG(C/T)ATTCA intron-variant
rs1000194246 -- 170,408,438(+) TGTCA(C/T)GTAAT intron-variant
rs1000241138 -- 170,403,357(+) TGAGA(A/G)TTGTG intron-variant
rs1000329384 -- 170,391,433(+) ACAAC(A/C)AAAAG intron-variant, upstream-variant-2KB
rs1000434958 -- 170,421,048(+) TCGAA(A/G)GAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CTD-2270F17.1 Gene

Variant ID Type Subtype PubMed ID
esv2731068 CNV deletion 23290073
esv3570549 CNV loss 25503493
nsv462515 CNV loss 19166990
nsv471054 CNV loss 18288195
nsv600260 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for CTD-2270F17.1 Gene

Disorders for CTD-2270F17.1 Gene

Relevant External Links for CTD-2270F17.1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTD-2270F17.1

No disorders were found for CTD-2270F17.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTD-2270F17.1 Gene

Publications for CTD-2270F17.1 Gene

No publications were found for CTD-2270F17.1 Gene.

Products for CTD-2270F17.1 Gene

Sources for CTD-2270F17.1 Gene

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