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Aliases for CTD-2201I18.1 Gene

Subcategory (RNA class) for CTD-2201I18.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-2201I18.1 Gene

  • Uncharacterized LOC101929215 3 5

External Ids for CTD-2201I18.1 Gene

Previous GeneCards Identifiers for CTD-2201I18.1 Gene

  • GC05M079349

Summaries for CTD-2201I18.1 Gene

GeneCards Summary for CTD-2201I18.1 Gene

CTD-2201I18.1 (Uncharacterized LOC101929215) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTD-2201I18.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2201I18.1 Gene

Genomics for CTD-2201I18.1 Gene

Regulatory Elements for CTD-2201I18.1 Gene

Enhancers for CTD-2201I18.1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H080179 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10 -104.2 -104191 17 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 ZNF766 SP5 SERINC5 PAPD4 ENSG00000251675 MTX3 CTD-2201I18.1 THBS4 DHFR LINC01337 GC05P080147
GH05H080251 1.6 Ensembl ENCODE dbSUPER 10.3 -171.5 -171524 7 HDGF PKNOX1 ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF143 FOS SP3 PAPD4 RPS3AP20 MTX3 ENSG00000251675 CTD-2201I18.1 THBS4 DHFR SERINC5 GC05P080147
GH05H080134 1.3 Ensembl ENCODE dbSUPER 10.4 -55.4 -55410 9 CTCF TBL1XR1 ZNF133 MAX EBF1 RAD21 POLR2A EED ETV6 RUNX3 SERINC5 CTD-2201I18.1 THBS4 GC05M080138 ENSG00000251675
GH05H080228 1.4 Ensembl ENCODE dbSUPER 9.4 -146.9 -146889 3 ELF3 FOXA2 MLX THRB ZSCAN9 RARA YY1 ZNF121 SMARCC2 FOS SERINC5 ENSG00000251675 CTD-2201I18.1 THBS4 GC05P080147
GH05H079560 1.3 FANTOM5 Ensembl ENCODE 9.4 +522.3 522314 1 PKNOX1 IRF2 L3MBTL2 HLF BACH1 ZNF175 CEBPB JUNB PTTG1 CEBPG CMYA5 HOMER1 ENSG00000250258 THBS4 CTD-2201I18.1 PAPD4 ENSG00000277818 LOC105379047
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTD-2201I18.1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTD-2201I18.1 Gene

Chromosome:
5
Start:
80,052,374 bp from pter
End:
80,083,665 bp from pter
Size:
31,292 bases
Orientation:
Minus strand

Genomic View for CTD-2201I18.1 Gene

Genes around CTD-2201I18.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2201I18.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2201I18.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2201I18.1 Gene

Proteins for CTD-2201I18.1 Gene

Post-translational modifications for CTD-2201I18.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2201I18.1 Gene

Domains & Families for CTD-2201I18.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2201I18.1 Gene

Function for CTD-2201I18.1 Gene

Phenotypes From GWAS Catalog for CTD-2201I18.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2201I18.1 Gene

Localization for CTD-2201I18.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTD-2201I18.1 Gene

Pathways & Interactions for CTD-2201I18.1 Gene

SuperPathways for CTD-2201I18.1 Gene

No Data Available

Interacting Proteins for CTD-2201I18.1 Gene

Gene Ontology (GO) - Biological Process for CTD-2201I18.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2201I18.1 Gene

Drugs & Compounds for CTD-2201I18.1 Gene

No Compound Related Data Available

Transcripts for CTD-2201I18.1 Gene

mRNA/cDNA for CTD-2201I18.1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2201I18.1 Gene

No ASD Table

Relevant External Links for CTD-2201I18.1 Gene

GeneLoc Exon Structure for
CTD-2201I18.1

Expression for CTD-2201I18.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2201I18.1 Gene

mRNA differential expression in normal tissues according to GTEx for CTD-2201I18.1 Gene

This gene is overexpressed in Heart - Left Ventricle (x5.7), Nerve - Tibial (x4.7), and Muscle - Skeletal (x4.1).
genes like me logo Genes that share expression patterns with CTD-2201I18.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2201I18.1 Gene

Orthologs for CTD-2201I18.1 Gene

Evolution for CTD-2201I18.1 Gene

ENSEMBL:
Gene Tree for CTD-2201I18.1 (if available)
TreeFam:
Gene Tree for CTD-2201I18.1 (if available)

No data available for Orthologs for CTD-2201I18.1 Gene

Paralogs for CTD-2201I18.1 Gene

No data available for Paralogs for CTD-2201I18.1 Gene

Variants for CTD-2201I18.1 Gene

Sequence variations from dbSNP and Humsavar for CTD-2201I18.1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs745310807 Uncertain significance 80,073,320(+) CCAAT(C/T)AGGAC intron-variant, reference, stop-gained
rs1000534990 -- 80,076,572(+) CAGTT(A/C/T)CCAGG intron-variant
rs1000581458 -- 80,083,401(+) CGATA(A/G)GATGA intron-variant, downstream-variant-500B
rs1000903528 -- 80,078,308(+) TAGAG(C/G)GTGCA intron-variant
rs1000942075 -- 80,071,409(+) ATTGC(C/T)AGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CTD-2201I18.1 Gene

Variant ID Type Subtype PubMed ID
esv3570228 CNV loss 25503493
esv3605549 CNV loss 21293372
esv3890662 CNV loss 25118596

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for CTD-2201I18.1 Gene

Disorders for CTD-2201I18.1 Gene

Relevant External Links for CTD-2201I18.1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTD-2201I18.1

No disorders were found for CTD-2201I18.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTD-2201I18.1 Gene

Publications for CTD-2201I18.1 Gene

  1. Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network. (PMID: 25436638) Malinowski JR … Crawford DC (PloS one 2014) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CTD-2201I18.1 Gene

Sources for CTD-2201I18.1 Gene

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