Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CTD-2194D22.4 Gene

Subcategory (RNA class) for CTD-2194D22.4 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-2194D22.4 Gene

  • Uncharacterized LOC101929081 3 5

External Ids for CTD-2194D22.4 Gene

Summaries for CTD-2194D22.4 Gene

GeneCards Summary for CTD-2194D22.4 Gene

CTD-2194D22.4 (Uncharacterized LOC101929081) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTD-2194D22.4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2194D22.4 Gene

Genomics for CTD-2194D22.4 Gene

Regulatory Elements for CTD-2194D22.4 Gene

Enhancers for CTD-2194D22.4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H001882 1.2 ENCODE dbSUPER 15.3 -1.9 -1876 7 PKNOX1 KLF17 EGR1 SCRT2 CREM EGR2 SP3 USF2 ZEB2 ZNF398 LOC100132773 BRD9 CTD-2194D22.4 LINC02116 MTCO2P32 SDHAP3 LOC728613 ENSG00000271119 MRPL36 ENSG00000248597
GH05H001948 1.2 ENCODE dbSUPER 14.8 +62.1 62142 2 ZNF493 ZNF133 ZNF2 GLIS2 ZNF416 FOS ZNF548 SP3 YY2 TSHZ1 SDHAP3 ENSG00000271119 LOC728613 LOC100132773 CTD-2194D22.4 LINC02116 MTCO2P32 LOC105374620 MRPL36 NDUFS6
GH05H001881 1 ENCODE dbSUPER 15 -5.9 -5856 0 KLF1 ZBTB21 MAX ZNF266 KLF17 ZNF324 ZFHX2 EGR1 ZBTB48 POLR2A LOC100132773 CTD-2194D22.4 LINC02116 MTCO2P32 BRD9 LOC101929056 GC05P001875
GH05H001883 1 ENCODE dbSUPER 15 -6.0 -5960 0 KLF1 ZBTB21 MAX ZNF266 KLF17 ZNF324 ZFHX2 EGR1 ZBTB48 POLR2A LOC100132773 CTD-2194D22.4 LINC02116 MTCO2P32 BRD9 MRPL36 LOC101929056 GC05P001875
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTD-2194D22.4 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTD-2194D22.4 Gene

Chromosome:
5
Start:
1,887,331 bp from pter
End:
1,900,493 bp from pter
Size:
13,163 bases
Orientation:
Plus strand

Genomic View for CTD-2194D22.4 Gene

Genes around CTD-2194D22.4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2194D22.4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2194D22.4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2194D22.4 Gene

Proteins for CTD-2194D22.4 Gene

Post-translational modifications for CTD-2194D22.4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2194D22.4 Gene

Domains & Families for CTD-2194D22.4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2194D22.4 Gene

Function for CTD-2194D22.4 Gene

Phenotypes From GWAS Catalog for CTD-2194D22.4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2194D22.4 Gene

Localization for CTD-2194D22.4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTD-2194D22.4 Gene

Pathways & Interactions for CTD-2194D22.4 Gene

SuperPathways for CTD-2194D22.4 Gene

No Data Available

Interacting Proteins for CTD-2194D22.4 Gene

Gene Ontology (GO) - Biological Process for CTD-2194D22.4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2194D22.4 Gene

Drugs & Compounds for CTD-2194D22.4 Gene

No Compound Related Data Available

Transcripts for CTD-2194D22.4 Gene

mRNA/cDNA for CTD-2194D22.4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2194D22.4 Gene

No ASD Table

Relevant External Links for CTD-2194D22.4 Gene

GeneLoc Exon Structure for
CTD-2194D22.4

Expression for CTD-2194D22.4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2194D22.4 Gene

genes like me logo Genes that share expression patterns with CTD-2194D22.4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2194D22.4 Gene

Orthologs for CTD-2194D22.4 Gene

Evolution for CTD-2194D22.4 Gene

ENSEMBL:
Gene Tree for CTD-2194D22.4 (if available)
TreeFam:
Gene Tree for CTD-2194D22.4 (if available)

No data available for Orthologs for CTD-2194D22.4 Gene

Paralogs for CTD-2194D22.4 Gene

No data available for Paralogs for CTD-2194D22.4 Gene

Variants for CTD-2194D22.4 Gene

Sequence variations from dbSNP and Humsavar for CTD-2194D22.4 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000170293 -- 1,887,979(+) TGGGG(A/C)GCCTG intron-variant, upstream-variant-2KB
rs1000200742 -- 1,887,686(+) GGCTG(C/T)TGCTC intron-variant, upstream-variant-2KB
rs1000692789 -- 1,897,781(+) CGCAC(A/G)TGGGG intron-variant
rs1000722262 -- 1,887,523(+) CTCGG(A/C)CCACG intron-variant, upstream-variant-2KB
rs1000944922 -- 1,888,754(+) CAAGC(C/T)TTGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CTD-2194D22.4 Gene

Variant ID Type Subtype PubMed ID
dgv9542n54 CNV loss 21841781
esv2729553 CNV deletion 23290073
esv3603825 CNV gain 21293372
esv3894113 CNV gain 25118596
nsv1136960 CNV deletion 24896259
nsv822962 CNV gain 20364138
nsv950633 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for CTD-2194D22.4 Gene

Disorders for CTD-2194D22.4 Gene

Relevant External Links for CTD-2194D22.4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CTD-2194D22.4

No disorders were found for CTD-2194D22.4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTD-2194D22.4 Gene

Publications for CTD-2194D22.4 Gene

  1. Evaluating genetic risk for prostate cancer among Japanese and Latinos. (PMID: 22923026) Cheng I … Haiman CA (Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2012) 3 60
  2. Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population. (PMID: 20676098) Takata R … Nakagawa H (Nature genetics 2010) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CTD-2194D22.4 Gene

Sources for CTD-2194D22.4 Gene

Content
Loading form....