Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CTD-2154B17.1 Gene

Subcategory (RNA class) for CTD-2154B17.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-2154B17.1 Gene

  • Uncharacterized CTD-2154B17.1 3
  • AC012629.1 5

External Ids for CTD-2154B17.1 Gene

Previous GeneCards Identifiers for CTD-2154B17.1 Gene

  • GC05U901992

Summaries for CTD-2154B17.1 Gene

GeneCards Summary for CTD-2154B17.1 Gene

CTD-2154B17.1 (Uncharacterized CTD-2154B17.1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTD-2154B17.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2154B17.1 Gene

Genomics for CTD-2154B17.1 Gene

Regulatory Elements for CTD-2154B17.1 Gene

Enhancers for CTD-2154B17.1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H010606 1.6 FANTOM5 Ensembl ENCODE 14.6 +179.3 179271 2 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 JUNB REST ZNF592 ROPN1L-AS1 ANKRD33B CTD-2154B17.1 LINC02221 ENSG00000248525 ANKRD33B-AS1 LINC02213 ROPN1L FAM173B LINC01513
GH05H010248 1.4 ENCODE dbSUPER 14.6 +536.7 536675 4 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ROPN1L-AS1 CCT5 LINC02221 CTD-2154B17.1 ENSG00000248525 ENSG00000250001 MARCH6 CMBL ENSG00000271980 ROPN1L
GH05H010507 1 ENCODE 14.6 +279.2 279159 0 PKNOX1 ATF1 ARNT FEZF1 TCF12 ZNF766 GATA2 ELK1 ATF7 FOS ROPN1L-AS1 CTD-2154B17.1 LINC02221 ENSG00000248525 ENSG00000250001 LINC02212 LINC02213
GH05H010759 1.7 FANTOM5 ENCODE dbSUPER 0.3 +25.7 25741 4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143 DAP MARCH6 LOC105374652 CMBL ROPN1L CTD-2154B17.1
GH05H010788 0.7 ENCODE 0.7 -2.4 -2394 1 CEBPG FOSL1 TCF12 NCOR1 EGR1 FOS NFE2 SOX6 BHLHE40 MAFG LOC105374652 DAP CTD-2154B17.1 GC05M010841
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CTD-2154B17.1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CTD-2154B17.1 Gene

Chromosome:
5
Start:
10,774,934 bp from pter
End:
10,787,035 bp from pter
Size:
12,102 bases
Orientation:
Minus strand

Genomic View for CTD-2154B17.1 Gene

Genes around CTD-2154B17.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2154B17.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2154B17.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2154B17.1 Gene

Proteins for CTD-2154B17.1 Gene

Post-translational modifications for CTD-2154B17.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2154B17.1 Gene

Domains & Families for CTD-2154B17.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2154B17.1 Gene

Function for CTD-2154B17.1 Gene

Phenotypes From GWAS Catalog for CTD-2154B17.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2154B17.1 Gene

Localization for CTD-2154B17.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTD-2154B17.1 Gene

Pathways & Interactions for CTD-2154B17.1 Gene

SuperPathways for CTD-2154B17.1 Gene

No Data Available

Interacting Proteins for CTD-2154B17.1 Gene

Gene Ontology (GO) - Biological Process for CTD-2154B17.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2154B17.1 Gene

Drugs & Compounds for CTD-2154B17.1 Gene

No Compound Related Data Available

Transcripts for CTD-2154B17.1 Gene

mRNA/cDNA for CTD-2154B17.1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2154B17.1 Gene

No ASD Table

Relevant External Links for CTD-2154B17.1 Gene

GeneLoc Exon Structure for
CTD-2154B17.1

Expression for CTD-2154B17.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2154B17.1 Gene

genes like me logo Genes that share expression patterns with CTD-2154B17.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2154B17.1 Gene

Orthologs for CTD-2154B17.1 Gene

Evolution for CTD-2154B17.1 Gene

ENSEMBL:
Gene Tree for CTD-2154B17.1 (if available)
TreeFam:
Gene Tree for CTD-2154B17.1 (if available)

No data available for Orthologs for CTD-2154B17.1 Gene

Paralogs for CTD-2154B17.1 Gene

No data available for Paralogs for CTD-2154B17.1 Gene

Variants for CTD-2154B17.1 Gene

Sequence variations from dbSNP and Humsavar for CTD-2154B17.1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000013739 -- 10,779,293(+) TAGTG(C/T)ATCTA intron-variant
rs1000065992 -- 10,779,543(+) CTGGA(C/G)TATAC intron-variant
rs1000421270 -- 10,781,923(+) GACAC(A/G)TAATT intron-variant
rs1000624008 -- 10,786,879(+) AAATA(A/T)TCCCT intron-variant
rs1000700388 -- 10,780,114(+) AGCAG(C/G)GCGGG intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CTD-2154B17.1 Gene

Disorders for CTD-2154B17.1 Gene

No disorders were found for CTD-2154B17.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CTD-2154B17.1 Gene

Publications for CTD-2154B17.1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 60

Products for CTD-2154B17.1 Gene

Sources for CTD-2154B17.1 Gene

Content
Loading form....